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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006392 ID=TCONS_00006392|Name=TCONS_00006392|organism=Clytia hemisphaerica|type=transcript|length=3343bp
GGAAGATGTGCTGTCAAATTGCTTGAAGGTTTTcaatttatctttttctt
tagataaataaaaatatcttagaTGTAAAATGCAAGAAATCGAAAACTAT
CCAATGGTTAGGTTGAGGAAAATCCGAGAAACATCCTTGAAAAGTGACCC
CTCAAACTTCATCTATCTGTCTTCTACAAAGCCTACAATAATAGGCCGGG
TCATAGCTGATGATGTCAACACACGAATGCTATCTAAATCGACACCATTA
ATGATCTCTAGAAGGCATGCCACTgtcacttttgaaaatggaaagGTGTT
TGTTGTTGATCACAGCAGCTTGAATGGAGTGTACATCAGGAATAAAAGAA
TTAGATCTGGTGTGAAAGCGGAGGTCAAAATTGGTGATCGGGTTGCATTT
GGTTGTGGTATTGATAAGGGCAGCCCACCTGAATTTGAATACTATGTTGA
AAATGCTCAATCTAAACACAAAACCGCAAATCCTAACTTATCAGCTTCAC
CTTTAAaacgaaaaagattttttgagccACCATCAATTACCATCATTGAA
TCCAATACTGCGCAAATCAAAGAGCAAGAGCAGAAAATAAAATCTCTTAG
TGAATCTTTGCAAGAAAAAGAGAAACAACATAAGAATATGCTTAGTCAAT
TTGAGGAAACTCAAAGTGATCTTTTGAAACAACTTGAAAATTCCAAACTT
CAGCTTGAGAATGAACGTCAAGAAGCTGAACTACATCTGAAGGGTCTACT
TGAAAATCAATTACATGAACAGGAATCAGCTCTAAAATCTCAATTTGACA
TGCAAATTAGGGatcttgaacttgaaaaaactcTTGTTGAGACAAATCTT
CAACAAGAACTATCCAAAAAGCTCTCAGAAAAAGATGAAGCTTATCAAAA
AGAGCTAgagaaacaaaaacttgagcttGAAACTACCATCTATGccaaag
aaagtgaaaaaagtaATCTTCTCAGCGAATTAAGGGCCAAAGAGCAAGTC
ATTGAAAAGTATCAATCTGTTGAAGAAAATCAGAAGCAACTTGAACAATG
TTTACAAGAACTACGAGATGAAATAAGTGAGAAAGAAAACCAATTGGAAC
AACAAAAGGAAATCACTAAAAAAGTTGAGATTGATGCCAAACAGAGTGCC
ATGCTATGCATGGAAGATGAATTTTCATGTATCATATGCTCACATTACTT
TATTGAGGCAACAACATTACCTTGTGCTCACACATTCTGTTCATTCTGTC
TTTGGGAAtggttaaaaaagaaaaagaattgccCTGTATGCAGACGTAAA
ATGAAAGGAAAAGCAGTTCGATCGTTAGTCCTTGACAGTTGTGTAGAGAA
ACTGGTTGAAACCTTTTCTGACGCAGAAAAAGAGGCTCGTGTTACGGAGC
AAACGAAACGTGAAACAATTATAAAGAAAGATGAATCTTCGGAAGAGAAA
AAATTTTATCGTCTACAAAAACACTGAAAGATAACACTAGtagtttgaaa
atgtttttttcaaaacatcgtAAAACGTTGAACTGGTTTCGTTCGTTGAC
TGCACGTCTCTTCATCATCACTTCAACAATATCTTCGGATTGAGATATTA
AACACACATTTCCTAAAAAAAATGTGATCGCCTAACAAATTATCGTAAAg
tatcatttcaatttcaatgtaCTCAAAAAGTACAAAACCTGAACAATTAG
GACAGCCTAAGTTCCTTGATCTATCAATTTAACACATACAAAGCGTCTAG
CAATACATACTCTAATCTTTGTTATTTCGTTAAGTCTTTGAGAGGGAAAA
AGGTTGATTAATACTTGGAtcgaatcataaaaaagaactTCTTGTTTCCT
GTGCCATatgattcaaaaataaatttagctGGGGAAAAGAGAATTTACAC
TCCGTTCTGTGGAAAGGTGCGAAATTTAACGATATTTCTACGCATTCTAA
GGCGTCCAGAACAAAGACCTCAAAAGTTCACTTGCTGTACTGATGTATGT
CTTTGTTTTGGATGCCACGCAGAACTAGaagattttaatgttttcataTT
TCTCTTTTAGATGCCGAAGGTATTCGAGAATTATTCCACAGAATTGAAGA
TTCTGATGTAGATGATACGCCCGCACGATCTAACGATCGAAATAATGCTC
AAAATCGAAACGGGCGACGTGATGGTGGATATCGAAGGCGCTCTCGATCC
AGGTCGCCCAGAAATCACCGTCACCGCCCTTATCATGACGGGCGTTACAA
CAATCAGAACAATAACTTCGTCAACAACATGTACCCGCCGCAAGCACAAG
CGCGCTATCACCAAGAGCGTTCAGGCGGTGGCAATTTCCACAATTATTTT
ACGAATGGTTTTCACAGTCACTTAACAAACCAATATGCCAATCATCACAA
CAATGCACGCTGTTTTAATTGCGGTGGACTAGACCATATTGCACGTTACT
GTCCCAGAGGTCCACGATAGATGTGTCAATGtctgaaacttctttttttt
tgtaaataaccCATTGATATTTGTAGcttaaaaaaataaagtgtacatag
gaaattgtatttttgaaacGGAAAGGGCAAAATTGAAAAGGTGcttggtt
ttgatttttgtacGGGTTTTACTGTATATGTACTGGAAAAGCAAAGTCTT
TTCACTTTCTGTCTATGCAAATATTACCTAATTTGTGTTTAGCTAAAGTG
ATTTCTTGATAAAGTTTGTCTCTATGTGTATCTTTATCTGTCGataaaat
tcgaattagatagcggttgattgctcgttgaaaagataatcagaagtaaa
tagaaaaatacaaagacTGAAAAATGAAcatggaaaatgaagaaaaaaac
acttcttGTAGAATTGTACATGAATTGTACTATTATCACTCTCTGaaata
atttctaaaaattttccaTCAAGTCAAAAAATACAGATTAGAACATTTGT
CTGGTTATGAGTCAatccttttcaatttttatcttcattctccaaagttt
tttgaaaatatttctttacgTGAATACCATTTTCATCGACTACAAAGCCG
CTATTTGAGGATCGATACAAGAAGTTACCGTTTTCTCCGCTGCCGAGTTT
TTTTAGGCAGACTTTTTCTTTAGTAAGGTGATGGAAATactctaaaaaat
atttttctttctataaATTATCTTGTGTTTATATTATTCTAATAATCTTA
TTATATCTTATTCGAGTTATCCTTAGAAATTAATAGGGATGTAATCATTA
TTTCAAGCTTTTTATGATGTTGTCATGAGCAATTTCATTGGCCataattt
gtttatttaaaaaaagttcttcATATTTTACTCATTACATCaa Run BLAST on NCBI transcript from alignment at sc0000067:153994..159031+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006392 ID=TCONS_00006392|Name=TCONS_00006392|organism=Clytia hemisphaerica|type=transcript|length=5038bp|location=Sequence derived from alignment at sc0000067:153994..159031+ (Clytia hemisphaerica)
GGAAGATGTGCTGTCAAATTGCTTGAAGGTTTTcaatttatctttttctt
tagataaataaaaatatcttagaTGTAAAATGCAAGAAATCGAAAACTAT
CCAATGGTTAGGTTGAGGAAAATCCGAGAAACATCCTTGAAAAGTGACCC
CTCAAACTTCATCTATCTGTCTTCTACAAAGCCTACAATAATAGGCCGGG
TCATAGCTGATGATGTCAACACACGAATGCTATCTAAATCGACACCATTA
ATGATCTCTAGAAGGCATGCCACTgtcacttttgaaaatggaaagGTGTT
TGTTGTTGATCACAGCGTAAGTTTTTGAtcattcattttcattttacacT
TTACTTGAAACATGACCGGGAAACCGAGAAAAGATAATTGTCTTCTGATG
GGGTatcagggctcgaaataacggtcagacatcggacattgtccaaccca
aatagcttcatgaccgacccaaaaatcataattttcaagctaaagcaacc
ctgatcggacatttttgtccgacccacttgaaatcgttatttcgagcctt
gggtatagttgttttaacattttttgtatAGTATATCTATCTCCAGCAAG
AAAAAATCAATCCATATTTTCAGCATATTTGTGCCAATATTTGATTGCAC
TGTACTTCAATGTTATTCTCAAGCTGAAAATTCACTTAATTTTTTCCTGC
ATTTTATCACTTTCGTTTTAGGcttcttttaaaatgtttttcttttttaa
tttttcttctttgttatTTGCAAGAacacaatttcaaaattctaattttt
ctcTTGGATACTGTAAACCATACTTAAAGATTGGAGGGGTACAGTAGCTA
GTTTTTATTAGATTTACAGTAAAATAAGCTGCTTATAACTCACTTATACC
CGCTTATACTGTAATTTAACCTCATAACTTCAAATTTTATTCTTTCTACA
GTAGCTACATCTATATTGTAgtttggtctaatgtcgacatccttcttcta
attttgacacccttctttagagatgggAATAATAAAAAGGATTTATTCCT
CTCTGATCgctacaaagtaaacaaaattagtttcaatcagtgaATTCGAC
CTTCCCATTATTCGTCAACTAACTGACGGTATAGatcttttttttgataa
tttattgTATCTTTTTTTTCAGAGCTTGAATGGAGTGTACATCAGGAATA
AAAGAATTAGATCTGGTGTGAAAGCGGAGGTCAAAATTGGTGATCGGGTT
GCATTTGGTTGTGGTATTGATAAGGGCAGCCCACCTGAATTTGAATACTA
TGTTGAAAATGCTCAATCTAAACACAAAACCGCAAATCCTAACTTATCAG
CTTCACCTTTAAaacgaaaaagattttttgagccACCATCAATTACCATC
ATTGAATCCAATACTGCGCAAATCAAAGAGCAAGAGCAGAAAATAAAATC
TCTTAGTGAATCTTTGCAAGAAAAAGAGAAACAACATAAGAATATGCTTA
GTCAATTTGAGGAAACTCAAAGTGATCTTTTGAAACAACTTGAAAATTCC
AAACTTCAGCTTGAGAATGAACGTCAAGAAGCTGAACTACATCTGAAGGG
TCTACTTGAAAATCAATTACATGAACAGGAATCAGCTCTAAAATCTCAAT
TTGACATGCAAATTAGGGatcttgaacttgaaaaaactcTTGTTGAGACA
AATCTTCAACAAGAACTATCCAAAAAGCTCTCAGAAAAAGATGAAGCTTA
TCAAAAAGAGCTAgagaaacaaaaacttgagcttGAAACTACCATCTATG
ccaaagaaagtgaaaaaagtaATCTTCTCAGCGAATTAAGGGCCAAAGAG
CAAGTCATTGAAAAGTATCAATCTGTTGAAGAAAATCAGAAGCAACTTGA
ACAATGTTTACAAGAACTACGAGATGAAATAAGTGAGAAAGAAAACCAAT
TGGAACAACAAAAGGAAATCACTAAAAAAGTTGAGATTGATGCCAAACAG
AGTGCCATGCTATGCATGGAAGATGAATTTTCATGTATCATATGCTCACA
TTACTTTATTGAGGCAACAACATTACCTTGTGCTCACACATTCTGTTCAT
TCTGTCTTTGGGAAtggttaaaaaagaaaaagaattgccCTGTATGCAGA
CGTAAAATGAAAGGAAAAGCAGTTCGATCGTTAGTCCTTGACAGTTGTGT
AGAGAAACTGGTTGAAACCTTTTCTGACGCAGAAAAAGAGGCTCGTGTTA
CGGAGCAAACGAAACGTGAAACAATTATAAAGAAAGATGAATCTTCGGAA
GGTAATTTATCCCCAAAAGTAGAGGAAGTTGAGGGTGATTTGATTCCTCT
GCCTACTGCAAATAACAGGCCTGGAAACCGTGAAATTATTCAAATAGATT
GAAAGTCTTCTATTATTTTATTGGTATAAAATTgaattcaaacaaaaatt
cataaaacatGAAAGCTAACAAATTTCACCATTCATATTATTTAGGGAGT
CAATTTTCTGACCGATTTAGAGTTTTTTAAACGAAagttttcttatgttt
ttaaAGAGGTattatatatttgaaaaaataggtCTTACAAGGTTTTTATT
ATGTATATAGCATTGGTATGTTCATATTTGTCACAACATtacaaaagaga
aaaatatttagtaAAACTCATAACAATACTTCATGATTGAAGATGAGTAT
CGAAAACGAATTTTTGAAGcgttatttttgttaatttattaAAATGCATG
AGTTAAAGCAAACTAACTAAAAACATGATCATttatgaaatattcaaaaa
aatattttagattgaATCATTTTGGTAGTTTGGTAGGTAGTTGTTGTTCT
TCGGTTTTTTCTCAGTGTTGATTTAGAAAAAGGATTTAGGGCTTGATTTT
CCCTGTTGTATAACTTAAAATTCTTTTGTGTCTTGTTTATTTCTTTGTCT
TAGAGAAAAAATTTTATCGTCTACAAAAACACTGAAAGATAACACTAGta
gtttgaaaatgtttttttcaaaacatcgtAAAACGTTGAACTGGTTTCGT
TCGTTGACTGCACGTCTCTTCATCATCACTTCAACAATATCTTCGGATTG
AGATATTAAACACACATTTCCTAAAAAAAATGTGATCGCCTAACAAATTA
TCGTAAAgtatcatttcaatttcaatgtaCTCAAAAAGTACAAAACCTGA
ACAATTAGGACAGCCTAAGTTCCTTGATCTATCAATTTAACACATACAAA
GCGTCTAGCAATACATACTCTAATCTTTGTTATTTCGTTAAGTCTTTGAG
AGGGAAAAAGGTTGATTAATACTTGGAtcgaatcataaaaaagaactTCT
TGTTTCCTGTGCCATatgattcaaaaataaatttagctGGGGAAAAGAGA
ATTTACACTCCGTTCTGTGGAAAGGTGCGAAATTTAACGATATTTCTACG
CATTCTAAGGCGTCCAGAACAAAGACCTCAAAAGTTCACTTGCTGTACTG
ATGTATGTCTTTGTTTTGGATGCCACGCAGAACTAGaagattttaatgtt
ttcataTTTCTCTTTTAGATGCCGAAGGTATTCGAGAATTATTCCACAGA
ATTGAAGATTCTGATGTAGATGATACGCCCGCACGATCTAACGATCGAAA
TAATGCTCAAAATCGAAACGGGCGACGTGATGGTGGATATCGAAGGCGCT
CTCGATCCAGGTCGCCCAGAAATCACCGTCACCGCCCTTATCATGACGGG
CGTTACAACAATCAGAACAATAACTTCGTCAACAACATGTACCCGCCGCA
AGCACAAGCGCGCTATCACCAAGAGCGTTCAGGCGGTGGCAATTTCCACA
ATTATTTTACGAATGGTTTTCACAGTCACTTAACAAACCAATATGCCAAT
CATCACAACAATGCACGCTGTTTTAATTGCGGTGAGATCTTTGTTTCCAA
TCTTAACGTCTTTCATTTTGCAATTCATTAGATCTATCCCATCGAGATTT
TAATTGATTCTAAATAAGCTATTTCTTTTAGAGTATTTCAGATATGTGCA
CTGCTGTAGTGTTTCCACTGATAATAGTTTGAGCAATGCTGAATAATATT
CCACTCTTGTTATTTTAGGTGGACTAGACCATATTGCACGTTACTGTCCC
AGAGGTCCACGATAGATGTGTCAATGtctgaaacttctttttttttgtaa
ataaccCATTGATATTTGTAGcttaaaaaaataaagtgtacataggaaat
tgtatttttgaaacGGAAAGGGCAAAATTGAAAAGGTGcttggttttgat
ttttgtacGGGTTTTACTGTATATGTACTGGAAAAGCAAAGTCTTTTCAC
TTTCTGTCTATGCAAATATTACCTAATTTGTGTTTAGCTAAAGTGATTTC
TTGATAAAGTTTGTCTCTATGTGTATCTTTATCTGTCGataaaattcgaa
ttagatagcggttgattgctcgttgaaaagataatcagaagtaaatagaa
aaatacaaagacTGAAAAATGAAcatggaaaatgaagaaaaaaacacttc
ttGTAGAATTGTACATGAATTGTACTATTATCACTCTCTGaaataatttc
taaaaattttccaTCAAGTCAAAAAATACAGATTAGAACATTTGTCTGGT
TATGAGTCAatccttttcaatttttatcttcattctccaaagttttttga
aaatatttctttacgTGAATACCATTTTCATCGACTACAAAGCCGCTATT
TGAGGATCGATACAAGAAGTTACCGTTTTCTCCGCTGCCGAGTTTTTTTA
GGCAGACTTTTTCTTTAGTAAGGTGATGGAAATactctaaaaaatatttt
tctttctataaATTATCTTGTGTTTATATTATTCTAATAATCTTATTATA
TCTTATTCGAGTTATCCTTAGAAATTAATAGGGATGTAATCATTATTTCA
AGCTTTTTATGATGTTGTCATGAGCAATTTCATTGGCCataatttgttta
tttaaaaaaagttcttcATATTTTACTCATTACATCaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00006392-exon-sc0000067-1491911889:153994..154309 | TCONS_00006392-exon-sc0000067-1491911889:153994..154309 | Clytia hemisphaerica | exon |
| TCONS_00006392-exon-sc0000067-1510915933:153994..154309 | TCONS_00006392-exon-sc0000067-1510915933:153994..154309 | Clytia hemisphaerica | exon |
| TCONS_00006392-exon-sc0000067-1575043694:153994..154309 | TCONS_00006392-exon-sc0000067-1575043694:153994..154309 | Clytia hemisphaerica | exon |
| TCONS_00006392-exon-sc0000067-1491911889:155166..156294 | TCONS_00006392-exon-sc0000067-1491911889:155166..156294 | Clytia hemisphaerica | exon |
| TCONS_00006392-exon-sc0000067-1510915933:155166..156294 | TCONS_00006392-exon-sc0000067-1510915933:155166..156294 | Clytia hemisphaerica | exon |
| TCONS_00006392-exon-sc0000067-1575043694:155166..156294 | TCONS_00006392-exon-sc0000067-1575043694:155166..156294 | Clytia hemisphaerica | exon |
| TCONS_00006392-exon-sc0000067-1491911889:156947..157924 | TCONS_00006392-exon-sc0000067-1491911889:156947..157924 | Clytia hemisphaerica | exon |
| TCONS_00006392-exon-sc0000067-1510915933:156947..157924 | TCONS_00006392-exon-sc0000067-1510915933:156947..157924 | Clytia hemisphaerica | exon |
| TCONS_00006392-exon-sc0000067-1575043694:156947..157924 | TCONS_00006392-exon-sc0000067-1575043694:156947..157924 | Clytia hemisphaerica | exon |
| TCONS_00006392-exon-sc0000067-1491911889:158112..159031 | TCONS_00006392-exon-sc0000067-1491911889:158112..159031 | Clytia hemisphaerica | exon |
| TCONS_00006392-exon-sc0000067-1510915933:158112..159031 | TCONS_00006392-exon-sc0000067-1510915933:158112..159031 | Clytia hemisphaerica | exon |
| TCONS_00006392-exon-sc0000067-1575043694:158112..159031 | TCONS_00006392-exon-sc0000067-1575043694:158112..159031 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000067 | supercontig | sc0000067:153994..159031 + |
Blast
BLAST of TCONS_00006392 vs. Swiss-Prot (Human)
Match: RNF8 (E3 ubiquitin-protein ligase RNF8 OS=Homo sapiens GN=RNF8 PE=1 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 3.536e-31 Identity = 135/468 (28.85%), Postives = 213/468 (45.51%), Query Frame = 2
Query: 152 SNFIYLSSTKPTIIGRVIADDVNTRMLSKSTPLMISRRHATVT-FENGKVFVVDHSSLNGVYIRNKRIRSGVKAEVKIGDRVAFGCGIDKGSPPEFEYYVENAQSKHKTANPNLSAS---------PLKRKRFFEPPSITIIESNTAQIKEQ-EQKIKSLS-ESLQEKEKQHKNMLSQFEETQSDLLKQLENSKLQLENERQEAELHLKGLLE-NQLHEQESALKSQFDMQIRDLELEKTLVETNLQQELSKKLSEKDEAYXXXXXXXXXXXXTTIYAKESEKSNLLSELRAKE---------------------QVIEKYQSVEENQKQLEQCLQE---LRDE-----------ISEKENQLEQQKEITKKVEIDAKQSAML-----CMEDEFSCIICSHYFIEATTLPCAHTFCSFCLWEWLKKKKNCPVCRRKMKGKAVRSLVLDSCVEKLVETFSDAEKEARVT 1396
+ ++ L +GR V +++SK PLMISR H + G+ ++D+ SLNGV++ R+ + GD + G ++ E+EY V + +T P LS L+ KR F S+ + A+ + KI +S ES Q + Q K + T SD L+ LE + G + ++H ++ A S R L++ K + L+ L ++ EK EA ++ + + E E +L S+L A++ Q +E Q ++ ++QL Q LQE L +E I K +LEQ KE +K ++ A++ +L +E+E CIICS YFIEA TL CAH+FCS+C+ EW+K+K CP+CR+ +K K SLVLD+C+ K+V S KE R+
Sbjct: 27 AGWLLLEDGCEVTVGRGFG--VTYQLVSKICPLMISRNHCVLKQNPEGQWTIMDNKSLNGVWLNRARLEPLRVYSIHQGDYIQLGVPLENKENAEYEYEV--TEEDWETIYPCLSPKNDQMIEKNKELRTKRKF---SLDELAGPGAEGPSNLKSKINKVSCESGQPVKSQGK---GEVASTPSD---NLDPKLTALEPSKTTGAPIYPGFPKVTEVHHEQKASNSSASQ--RSLQMFKVTMSRILR--LKIQMQEKHEAVMNVKKQTQKGNSKKVVQMEQELQDLQSQLCAEQAQQQARVEQLEKTFQEEEQHLQGLEIAQGEKDLKQQLAQALQEHWALMEELNRSKKDFEAIIQAKNKELEQTKE--EKEKMQAQKEEVLSHMNDVLENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKTY-SLVLDNCINKMVNNLSSEVKERRIV 474
The following BLAST results are available for this feature:
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