TCONS_00006369 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006369
Unique NameTCONS_00006369
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length324

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006369 ID=TCONS_00006369|Name=TCONS_00006369|organism=Clytia hemisphaerica|type=transcript|length=324bp
aaacaccataactccaaatttaaGTCAAAGGCTGAACCTGTGTGGAAACA
CGTGGGAGAGGCCAGtatttttcagtgaaaaataaaaattaaaaggaaaa
attactgaagaaaaagtcaaaatcaaatgTTTGGCGAGCTACAACTGGTG
GATATCAACAACAATCAATCCTGCCTGCCTTGGCTTGTTTGTATGTAAAG
TCTGAAGACCACCTCATCCACTAAACTCTAACGCTTCAACATCAGGCTGC
ACTCATCCCACAGTGCAGCCATTCAGCTAAGTGACTAATACTATTTACAA
ATGTGACAAGATTCTTCATTGTAA
Run BLAST on NCBI

transcript from alignment at sc0000066:532352..532675

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006369 ID=TCONS_00006369|Name=TCONS_00006369|organism=Clytia hemisphaerica|type=transcript|length=324bp|location=Sequence derived from alignment at sc0000066:532352..532675 (Clytia hemisphaerica)
TTACAATGAAGAATCTTGTCACATTTGTAAATAGTATTAGTCACTTAGCT
GAATGGCTGCACTGTGGGATGAGTGCAGCCTGATGTTGAAGCGTTAGAGT
TTAGTGGATGAGGTGGTCTTCAGACTTTACATACAAACAAGCCAAGGCAG
GCAGGATTGATTGTTGTTGATATCCACCAGTTGTAGCTCGCCAAAcattt
gattttgactttttcttcagtaatttttccttttaatttttatttttcac
tgaaaaataCTGGCCTCTCCCACGTGTTTCCACACAGGTTCAGCCTTTGA
Cttaaatttggagttatggtgttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003642XLOC_003642Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006369-exon-sc0000066-1491911889:532352..532675TCONS_00006369-exon-sc0000066-1491911889:532352..532675Clytia hemisphaericaexon
TCONS_00006369-exon-sc0000066-1510915933:532352..532675TCONS_00006369-exon-sc0000066-1510915933:532352..532675Clytia hemisphaericaexon
TCONS_00006369-exon-sc0000066-1575043694:532352..532675TCONS_00006369-exon-sc0000066-1575043694:532352..532675Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000066supercontigsc0000066:532352..532675 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.85088	2.04221	2.9753	1.70856	6.94181	7.23208	5.949	4.4555	4.32375	5.0184	2.86765	3.18061	2.99012	2.29658	1.05513	1.12787	0.926299	0.804946	0.655842	0.343146	1.19302	3.10941	0	1.28625	7.61763	2.95589	1.04683	0	0.342389	1.39536
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006369 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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