TCONS_00006364 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006364
Unique NameTCONS_00006364
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1186

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006364 ID=TCONS_00006364|Name=TCONS_00006364|organism=Clytia hemisphaerica|type=transcript|length=1186bp
ataaaatccatTTCGAGAAGAAAGATCGCAGAAAAATAAGTCGAAGCAAT
GATAAACACGATTTAGCATATCAAAAGCGTAAACGATACATTCGAATATG
TGAATCGTTGAAAATACCGATCATATCGATATACATCGAACGTTTAACGA
CACCAAATTTATTGTTAGCGCATCGAGGAATCGGATCGAGAGCGATGCAC
GGAATCGCGTTGAGTTTACGACATAACACGTGGGTAACAAACATCGATTT
AACCGATAATAACCTTGATAAAAATGCGGCAAACTCGTTAGCAGTAATGT
TCGAGGATAATCACTTTATAGTACGTTTAAACCTAACTAATAATCATATA
GGTCAGGAAGGTACTGAAAGATTACTGGGTGCATTAAGTTATCACACTTC
TATAGCCTACTTGAGTCTGTCCGAAAATAGACTTCCGGACAAGATTGCAA
AGCCACTTGGGGAATTTCTATCAGTTAATAACACTTTGCTCGAACTTGAC
CTTAGCAAAAATGAGCTTTCGACTGAAAGTGGTTCGACTTTCAAGGAAAG
TTTACCAATGAATAGAACGCTGTTAGACTTAGACCTGAGTTGGAACCAAT
TCAGAGGTCAGGGTGCAGTCGACGTTGCTGCTGGTTTGGCACAGAACAAA
AGTTTAGTAAATGTAAATTTAGCCTGGAATGGGTTCTCCAATATTGGTTC
TCAGGCTATTGGGAAATGTATTAGTATGAATAAAACCTTAACTCAACTAG
ACTTGAGTCATAACCGAGTTGGTTGTAAAGGATTGAAGGAGATCGGTGAA
GCATTAAGAACGAATACGACATTAGATGTATTGAGACTTGGCTGGAATCA
ACTTAAATCGAATAGTGTAAACAAGGTCTTAATTGGATGTTTAGAAAACC
CTAAACACACTATCCAATCGTTTCATTTTGAATCAACtctaatgaataat
gaaaacatCACAAACATCAACAAACTAATAGCTAAGAATCCAACTCTCCA
ATTCACGCATGGTGGATATAGCAAAGAGAAAGCGTTCGATGACAATCCCG
AGGACGTTCGAATGCAACTATTGAACATCTTACGAACTTATCTAGTCGAT
AACCGGTTACGCATGGTAGATCTGTTCAATCGTTGGGATAAAGATAAAAG
TTACAGTTTAACACATGAGGAGTTTAGGAAAGGTGT
Run BLAST on NCBI

protein sequence of TCONS_00006364-protein

>TCONS_00006364-protein ID=TCONS_00006364-protein|Name=TCONS_00006364-protein|organism=Clytia hemisphaerica|type=polypeptide|length=394bp
KIHFEKKDRRKISRSNDKHDLAYQKRKRYIRICESLKIPIISIYIERLTT
PNLLLAHRGIGSRAMHGIALSLRHNTWVTNIDLTDNNLDKNAANSLAVMF
EDNHFIVRLNLTNNHIGQEGTERLLGALSYHTSIAYLSLSENRLPDKIAK
PLGEFLSVNNTLLELDLSKNELSTESGSTFKESLPMNRTLLDLDLSWNQF
RGQGAVDVAAGLAQNKSLVNVNLAWNGFSNIGSQAIGKCISMNKTLTQLD
LSHNRVGCKGLKEIGEALRTNTTLDVLRLGWNQLKSNSVNKVLIGCLENP
KHTIQSFHFESTLMNNENITNINKLIAKNPTLQFTHGGYSKEKAFDDNPE
DVRMQLLNILRTYLVDNRLRMVDLFNRWDKDKSYSLTHEEFRKG
Run BLAST on NCBI

transcript from alignment at sc0000066:454648..455833

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006364 ID=TCONS_00006364|Name=TCONS_00006364|organism=Clytia hemisphaerica|type=transcript|length=1186bp|location=Sequence derived from alignment at sc0000066:454648..455833 (Clytia hemisphaerica)
ACACCTTTCCTAAACTCCTCATGTGTTAAACTGTAACTTTTATCTTTATC
CCAACGATTGAACAGATCTACCATGCGTAACCGGTTATCGACTAGATAAG
TTCGTAAGATGTTCAATAGTTGCATTCGAACGTCCTCGGGATTGTCATCG
AACGCTTTCTCTTTGCTATATCCACCATGCGTGAATTGGAGAGTTGGATT
CTTAGCTATTAGTTTGTTGATGTTTGTGatgttttcattattcattagaG
TTGATTCAAAATGAAACGATTGGATAGTGTGTTTAGGGTTTTCTAAACAT
CCAATTAAGACCTTGTTTACACTATTCGATTTAAGTTGATTCCAGCCAAG
TCTCAATACATCTAATGTCGTATTCGTTCTTAATGCTTCACCGATCTCCT
TCAATCCTTTACAACCAACTCGGTTATGACTCAAGTCTAGTTGAGTTAAG
GTTTTATTCATACTAATACATTTCCCAATAGCCTGAGAACCAATATTGGA
GAACCCATTCCAGGCTAAATTTACATTTACTAAACTTTTGTTCTGTGCCA
AACCAGCAGCAACGTCGACTGCACCCTGACCTCTGAATTGGTTCCAACTC
AGGTCTAAGTCTAACAGCGTTCTATTCATTGGTAAACTTTCCTTGAAAGT
CGAACCACTTTCAGTCGAAAGCTCATTTTTGCTAAGGTCAAGTTCGAGCA
AAGTGTTATTAACTGATAGAAATTCCCCAAGTGGCTTTGCAATCTTGTCC
GGAAGTCTATTTTCGGACAGACTCAAGTAGGCTATAGAAGTGTGATAACT
TAATGCACCCAGTAATCTTTCAGTACCTTCCTGACCTATATGATTATTAG
TTAGGTTTAAACGTACTATAAAGTGATTATCCTCGAACATTACTGCTAAC
GAGTTTGCCGCATTTTTATCAAGGTTATTATCGGTTAAATCGATGTTTGT
TACCCACGTGTTATGTCGTAAACTCAACGCGATTCCGTGCATCGCTCTCG
ATCCGATTCCTCGATGCGCTAACAATAAATTTGGTGTCGTTAAACGTTCG
ATGTATATCGATATGATCGGTATTTTCAACGATTCACATATTCGAATGTA
TCGTTTACGCTTTTGATATGCTAAATCGTGTTTATCATTGCTTCGACTTA
TTTTTCTGCGATCTTTCTTCTCGAAatggattttat

Coding sequence (CDS) from alignment at sc0000066:454648..455833

>TCONS_00006364 ID=TCONS_00006364|Name=TCONS_00006364|organism=Clytia hemisphaerica|type=CDS|length=1182bp|location=Sequence derived from alignment at sc0000066:454648..455833 (Clytia hemisphaerica)
ACCTTTCCTAAACTCCTCATGTGTTAAACTGTAACTTTTATCTTTATCCC
AACGATTGAACAGATCTACCATGCGTAACCGGTTATCGACTAGATAAGTT
CGTAAGATGTTCAATAGTTGCATTCGAACGTCCTCGGGATTGTCATCGAA
CGCTTTCTCTTTGCTATATCCACCATGCGTGAATTGGAGAGTTGGATTCT
TAGCTATTAGTTTGTTGATGTTTGTGatgttttcattattcattagaGTT
GATTCAAAATGAAACGATTGGATAGTGTGTTTAGGGTTTTCTAAACATCC
AATTAAGACCTTGTTTACACTATTCGATTTAAGTTGATTCCAGCCAAGTC
TCAATACATCTAATGTCGTATTCGTTCTTAATGCTTCACCGATCTCCTTC
AATCCTTTACAACCAACTCGGTTATGACTCAAGTCTAGTTGAGTTAAGGT
TTTATTCATACTAATACATTTCCCAATAGCCTGAGAACCAATATTGGAGA
ACCCATTCCAGGCTAAATTTACATTTACTAAACTTTTGTTCTGTGCCAAA
CCAGCAGCAACGTCGACTGCACCCTGACCTCTGAATTGGTTCCAACTCAG
GTCTAAGTCTAACAGCGTTCTATTCATTGGTAAACTTTCCTTGAAAGTCG
AACCACTTTCAGTCGAAAGCTCATTTTTGCTAAGGTCAAGTTCGAGCAAA
GTGTTATTAACTGATAGAAATTCCCCAAGTGGCTTTGCAATCTTGTCCGG
AAGTCTATTTTCGGACAGACTCAAGTAGGCTATAGAAGTGTGATAACTTA
ATGCACCCAGTAATCTTTCAGTACCTTCCTGACCTATATGATTATTAGTT
AGGTTTAAACGTACTATAAAGTGATTATCCTCGAACATTACTGCTAACGA
GTTTGCCGCATTTTTATCAAGGTTATTATCGGTTAAATCGATGTTTGTTA
CCCACGTGTTATGTCGTAAACTCAACGCGATTCCGTGCATCGCTCTCGAT
CCGATTCCTCGATGCGCTAACAATAAATTTGGTGTCGTTAAACGTTCGAT
GTATATCGATATGATCGGTATTTTCAACGATTCACATATTCGAATGTATC
GTTTACGCTTTTGATATGCTAAATCGTGTTTATCATTGCTTCGACTTATT
TTTCTGCGATCTTTCTTCTCGAAatggatttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003637XLOC_003637Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006364-proteinTCONS_00006364-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006364-exon-sc0000066-1491911889:454648..455833TCONS_00006364-exon-sc0000066-1491911889:454648..455833Clytia hemisphaericaexon
TCONS_00006364-exon-sc0000066-1510915933:454648..455833TCONS_00006364-exon-sc0000066-1510915933:454648..455833Clytia hemisphaericaexon
TCONS_00006364-exon-sc0000066-1575043694:454648..455833TCONS_00006364-exon-sc0000066-1575043694:454648..455833Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000066supercontigsc0000066:454648..455833 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0363129	0	0	0.0804499	0	0	1.12046	0.961551	0.306002	0.530646	1.21407	0.411132	0	0.0250806	0.288676	0.243409	1.6356	1.17351	0	0.161575	0.842626	0.411003	0.166543	0.529941	0.272913	0.487137	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00006364 vs. Swiss-Prot (Human)
Match: LR74A (Leucine-rich repeat-containing protein 74A OS=Homo sapiens GN=LRRC74A PE=2 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 1.674e-46
Identity = 110/401 (27.43%), Postives = 204/401 (50.87%), Query Frame = 3 
Query:   24 DRRKISRSNDKHDLAYQ---------KRKRYIRICESLKIPIISIYIERLTTPNLLLAHRGIGSRAMHGIALSLRHNTWVTNIDLTDNNLDKNAANSLAVMFEDNHFIVRLNLTNNHIGQEGTERLLGALSYHTS-IAYLSLSENRLPDKIAKPLGEFLSVNNTLLELDLSKNELSTESGSTFKESLPMNRTLLDLDLSWNQFRGQGAVDVAAGLAQNKSLVNVNLAWNGFSNIGSQAIGKCISMNKTLTQLDLSHNRVGCKGLKEIGEALRTNTTLDVLRLGWNQLKSNSVNKVLIGCLENPKHTIQSFHFESTLMNNENITNINKLIAKNPTLQFTHG---GYSKEKAFD--DNPEDVRMQLLNILRTYLVDNRLRMVDLFNRWDKDKSYSLTHEEFRK 1181
            ++ K +R N + DL  +         +++ Y+  C+ + +  +S +I  +    + L H G+G R    IA++L  N  VT ++L DN + +    SL  M ++N+++  +N++NNH+G EG   +      ++S I  L LS N   +  A  L + LS N  + +LDLS N+ S   G    + L +N  L  LDLSWN F  +GAV +  GL  N +L  ++L+ NGF N  + A+G+ + +N+ L  LD+  N +G +G  +I + L +N +L VL+L  N +  +    +++    NPK  ++     + L++ + +  ++ + A +P L        G S +K      NP       + ++++Y   +++ +VD F   +   +  ++ +EF+K
Sbjct:   56 EKVKPARENSETDLEIEDDEKFFTTGQKELYLEACKLMGVVPVSYFIRNMEESYVNLNHHGLGPRGTKAIAIALVSNMAVTKLELEDNCIMEEGVLSLVEMLQENYYLQEMNISNNHLGLEGARIISDFFERNSSSIWSLELSGNDFKEDSAALLCQALSTNYQIKKLDLSHNQFSDVGGEHLGQMLAINVGLTSLDLSWNNFHTRGAVALCNGLRGNVTLTKLDLSMNGFGNEVALALGEVLRLNRCLVYLDIGGNDIGNEGASKISKGLESNESLRVLKLFLNPINMDGAILLILAIKRNPKSRMEELDISNVLVSEQFMKTLDGVYAVHPQLDVVFKAVQGLSPKKTIFLLTNP-------MKLIQSYADQHKITIVDFFKSLNPTGTMKMSVDEFQK 449
The following BLAST results are available for this feature:
BLAST of TCONS_00006364 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LR74A1.674e-4627.43Leucine-rich repeat-containing protein 74A OS=Homo... [more]
back to top