TCONS_00006361 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006361
Unique NameTCONS_00006361
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length478

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006361 ID=TCONS_00006361|Name=TCONS_00006361|organism=Clytia hemisphaerica|type=transcript|length=478bp
TTTCCAGAAATTCGTCTGACAAAGGACAACAGAGTAGGCTATATACAACG
GCTTTCGACAGAATGGAAAATCTCCTTCAAACTCAAATACGTTGCCCACA
ACCCTCCATCGTATGGTACAAACACTCTCTTCTTGAAAGGGACGTTCAAC
TATCCCGCAATACAGGGATACGCTGGTACATCCAAGCTTGATATCACACA
CAGAATCTCTAGCGGTATAAATAATCGTTTTGTCTCAGATATACTAACAC
TAAACAAGTATTATTCGATAGAGCTTGAGCAAAGATACATATCAAACGGT
AATTATAAGTACTCGATCAAAATAGATGGGATCGAGAAACATTCTGTGAT
CAACAATGACGCTCAGCAAATTTACAATGTTGAGATCTATGCATCTCATC
ACACACGTATCCCTAGTCCAGCAGATATGAAAGACCTTGAGATCACTAAT
TTTCTTTGATCGAATGAATTTATGAATT
Run BLAST on NCBI

protein sequence of TCONS_00006361-protein

>TCONS_00006361-protein ID=TCONS_00006361-protein|Name=TCONS_00006361-protein|organism=Clytia hemisphaerica|type=polypeptide|length=152bp
FPEIRLTKDNRVGYIQRLSTEWKISFKLKYVAHNPPSYGTNTLFLKGTFN
YPAIQGYAGTSKLDITHRISSGINNRFVSDILTLNKYYSIELEQRYISNG
NYKYSIKIDGIEKHSVINNDAQQIYNVEIYASHHTRIPSPADMKDLEITN
FL
Run BLAST on NCBI

transcript from alignment at sc0000066:417832..418309

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006361 ID=TCONS_00006361|Name=TCONS_00006361|organism=Clytia hemisphaerica|type=transcript|length=478bp|location=Sequence derived from alignment at sc0000066:417832..418309 (Clytia hemisphaerica)
AATTCATAAATTCATTCGATCAAAGAAAATTAGTGATCTCAAGGTCTTTC
ATATCTGCTGGACTAGGGATACGTGTGTGATGAGATGCATAGATCTCAAC
ATTGTAAATTTGCTGAGCGTCATTGTTGATCACAGAATGTTTCTCGATCC
CATCTATTTTGATCGAGTACTTATAATTACCGTTTGATATGTATCTTTGC
TCAAGCTCTATCGAATAATACTTGTTTAGTGTTAGTATATCTGAGACAAA
ACGATTATTTATACCGCTAGAGATTCTGTGTGTGATATCAAGCTTGGATG
TACCAGCGTATCCCTGTATTGCGGGATAGTTGAACGTCCCTTTCAAGAAG
AGAGTGTTTGTACCATACGATGGAGGGTTGTGGGCAACGTATTTGAGTTT
GAAGGAGATTTTCCATTCTGTCGAAAGCCGTTGTATATAGCCTACTCTGT
TGTCCTTTGTCAGACGAATTTCTGGAAA

Coding sequence (CDS) from alignment at sc0000066:417832..418309

>TCONS_00006361 ID=TCONS_00006361|Name=TCONS_00006361|organism=Clytia hemisphaerica|type=CDS|length=459bp|location=Sequence derived from alignment at sc0000066:417832..418309 (Clytia hemisphaerica)
TCAAAGAAAATTAGTGATCTCAAGGTCTTTCATATCTGCTGGACTAGGGA
TACGTGTGTGATGAGATGCATAGATCTCAACATTGTAAATTTGCTGAGCG
TCATTGTTGATCACAGAATGTTTCTCGATCCCATCTATTTTGATCGAGTA
CTTATAATTACCGTTTGATATGTATCTTTGCTCAAGCTCTATCGAATAAT
ACTTGTTTAGTGTTAGTATATCTGAGACAAAACGATTATTTATACCGCTA
GAGATTCTGTGTGTGATATCAAGCTTGGATGTACCAGCGTATCCCTGTAT
TGCGGGATAGTTGAACGTCCCTTTCAAGAAGAGAGTGTTTGTACCATACG
ATGGAGGGTTGTGGGCAACGTATTTGAGTTTGAAGGAGATTTTCCATTCT
GTCGAAAGCCGTTGTATATAGCCTACTCTGTTGTCCTTTGTCAGACGAAT
TTCTGGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003634XLOC_003634Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006361-exon-sc0000066-1491911889:417832..418309TCONS_00006361-exon-sc0000066-1491911889:417832..418309Clytia hemisphaericaexon
TCONS_00006361-exon-sc0000066-1510915933:417832..418309TCONS_00006361-exon-sc0000066-1510915933:417832..418309Clytia hemisphaericaexon
TCONS_00006361-exon-sc0000066-1575043694:417832..418309TCONS_00006361-exon-sc0000066-1575043694:417832..418309Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006361-proteinTCONS_00006361-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000066supercontigsc0000066:417832..418309 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.14933	0	0	0	1.1626	0.952453	1.77823	1.65196	0.935338	1.40538	2.79612	0.919597	0	0	0.198015	0	3.48231	6.40918	0.510065	0.373188	0	0.137481	0	0.154719	0	0	0	0.149143
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006361 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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