TCONS_00006349 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006349
Unique NameTCONS_00006349
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length304

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006349 ID=TCONS_00006349|Name=TCONS_00006349|organism=Clytia hemisphaerica|type=transcript|length=304bp
CAATGATGTAAGTCAAAAAATGTCTCCTAGAgtaacattttttgaaagca
cagtaatttttaatgttttgttgCAAATTTACATAATATGCTTTAGCATG
CCTCCCTCAGATGATTTAGTACACACATATATAGATCAGAATCAGCAAGT
AAGTCAAAAAAGGTCTCCTGAAACATGAAAATACATACAGAAACAATGAA
ATTAACCTTGTATAATCAAATGTTGAAAGTTACAGACCTGTATAGGCAAA
CACTAATAAACTATGTCTTGTTCAAGAAAGTAAGTCACATTTTGGCACct
ttta
Run BLAST on NCBI

transcript from alignment at sc0000066:128151..128454

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006349 ID=TCONS_00006349|Name=TCONS_00006349|organism=Clytia hemisphaerica|type=transcript|length=304bp|location=Sequence derived from alignment at sc0000066:128151..128454 (Clytia hemisphaerica)
taaaagGTGCCAAAATGTGACTTACTTTCTTGAACAAGACATAGTTTATT
AGTGTTTGCCTATACAGGTCTGTAACTTTCAACATTTGATTATACAAGGT
TAATTTCATTGTTTCTGTATGTATTTTCATGTTTCAGGAGACCTTTTTTG
ACTTACTTGCTGATTCTGATCTATATATGTGTGTACTAAATCATCTGAGG
GAGGCATGCTAAAGCATATTATGTAAATTTGcaacaaaacattaaaaatt
actgtgctttcaaaaaatgttacTCTAGGAGACATTTTTTGACTTACATC
ATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003622XLOC_003622Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006349-exon-sc0000066-1491911889:128151..128454TCONS_00006349-exon-sc0000066-1491911889:128151..128454Clytia hemisphaericaexon
TCONS_00006349-exon-sc0000066-1510915933:128151..128454TCONS_00006349-exon-sc0000066-1510915933:128151..128454Clytia hemisphaericaexon
TCONS_00006349-exon-sc0000066-1575043694:128151..128454TCONS_00006349-exon-sc0000066-1575043694:128151..128454Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000066supercontigsc0000066:128151..128454 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.8656	1.45541	1.2674	2.06659	1.00635	0.397615	1.91882	0.449094	2.51537	2.33677	0	1.73947	0	1.28854	2.33057	2.27369	4.7617	1.72256	1.18991	0.830101	6.49357	8.97412	0	0.388944	1.20181	1.07259	1.53487	4.91415	2.48481	2.10969
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006349 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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