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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006339 ID=TCONS_00006339|Name=TCONS_00006339|organism=Clytia hemisphaerica|type=transcript|length=2990bp
tctcattttgatatttttgaaaaaatatttgttagAGGCTGTTGTTGTTG
CGCGAGGAAGCAGAACtcaaattcaataaattacaGATTTTAAAGATGTC
TTCAAGAATGAAAATCTTACTCTGTTGTTATCTATTCATTGTAACGTCTG
TTCAAGCTCAATCGAATTGGTGGGGAAACTCCAAGGAGGCGGAGAGGAAC
AATACAACCATACCAGTCAAAAACCCTTTCCCGTTAGCAGACTTCCTAGA
AATAACTAACATATCGAGATTACTGAGTTGGAAAGGACTTCAATGTCAAT
CCAAGATCAATCCTTATGATTGTGAATGTCAACGAAGTTGTCAAAACACT
GGATCTTGTTGTATTGATTACCTATGGAATCACAATGAAGCTCCAATAAC
AAATACGTCATCCTTGGAGAGTGCCAAAGCTTACCAAAAGATTTTAGATT
CGTCCATCAAAGAAATGTCCTGTCTACCATTTTTTCCTTTCTCGACAGTA
ATCAAACAGCATTTCATAATGGTATCTGGATGTTCTGAATCCGCAACAGC
TACCGATAAACAGAAATGTATCAACAGTGAGGGTAACCCACAAAACGAAC
AAATCCCAGTCCTTGGCAAAGACCAGTATCTCTATAAAAATGAACATTGC
GCGAAATGCAATGGAATCCTGGTTTACAAATATGAAAAGATCGAAATATT
TTGCGACGAGTCTCTTGTAGATACCAAATCAACGGACTTtaaaagcaaaa
caatttttgaactcTTGGAACAATACCCGAAAGGGTGTTCAATTAAACCT
TCTCTAGGCTTACAGAGCGATATCATAGAATGTCAACTGGATTTTTGCCC
ACCTGTTTATGCATCTTATTGCAGTATAATTGCCGCACGGTTCCATCCAG
TTTCTGGAATTTTTAGTGACTCCGTTAAAAACGTATATTGTTTTAAATGT
AATGGTGGCTTGGTAGGTCCAAACGCTGAAGTGGATGCTACCTTTGAAAC
ATATGTCCATGGAGGAGGTTGGTCAAAAACTGTCGATATGAATGAGTTAA
TGAATAAGAAAAGTGACCAATGTCTATCCGATGAAGTGAGATCTAGTTAT
GGTGACTGTATCCCAATGCTATGTGGGTTTGGGTACGAATTACTGAATCG
ACAATGTGTCAAAACCATATCTGGTAGAAACATATCCAATAGCTTGATTA
ACATTTCTACAGCATCTAACGATACTActtttgttcaaaagtgtttACCG
CAGATCCATCAAAGCCTTGCTCTCTACATTTTCTTTAACTCAACATTCAT
AGAATATGTTTCAGCGGAAAGATACGTGAAAGATGTTTTTGAGAAACATC
AAATTACTGGAGATACAATGTTCATACTACAAGACAGCGGATTTGTCATT
CAATCTCCTGTCATCACAACAAATTTATCATTGCTTTCCATTCAAAAGGA
AGTATTTACCTACTTTGGAATCTCAAAGATTGTTCTAACACCTTCGATAC
ATAATCTCCCGTTCGTTAACACTTTAGACTTATCCAAATATTTTGAGGGC
GGTTCGAAATTGTGTGCGTTCACTTCCAAGCAATCAATACCACGACCAGA
CACACCTTGCGAAATCCTTGGAACGGATAGTAAGCTAATTCTTGAGATAT
ACAGGAATGGTtcgatgaaagaaaaaattgacaaatgtCATTTTTATTAT
CTTGATTCAAGCTGTTTCAGACAAGAGCTGAAGTATAAAGACTTCTCAGT
AGAAAATTCATCAAAGGTACTGACAATAACGACTGAAGATGATACGGTAG
TTTCTTATTCACCAGATAAATATGCTCCGAATCCCATAACAAACGGATTT
GAAATATGCATTCCGAATGGCACTGAATCGTCAAAAAGCAAATACCCTTG
GCAGGAAACAATCAACGATGCGAGTTACATTATATCTCTTATCGGAACCA
TCGCTAGTATTGTTTCACATtcgattttcatcattttattcTATCTCGTT
CGACCCCTTCGAAACACAGGTGGGTTGTATGTTTTAGTGCTAGTTATCTT
CCTGCTAGCGAGTGATTTGATTTTCATTATCAGCATCAATCTAACTCTAA
ATACTGGAGCTTGCAAATGTTTCGGTATCTTACTGTACGAAACTTTATTA
CTTGTATGCTGCTGGACCATTGTTGTGGCCTTTGATATGACTTTGAAATT
CACCAGCTCCTTTGACAAAGGATCGAGTGATGACCCACAAAAGACGTTGC
GAAAAAGGATTTTGATAGTGTTACTTTTATGCACTGGTTTAACATTGTTA
GTTGTGACCCTCAATGAGACTGATGTGTTAGACTTTGCTTTTGAACAAAA
TTGCTGGATCGGAAATTCGGTGTTAAGAATCGGATTTTATTTTGTACCGA
TCGTAATATCATACACTCTCTGCATCGTGGACCTTGCTATTCTTATCTAC
AGTATTTACAAGGCTAAACAAAGCTCAAAGAATGCTTTGGGAGATTCGAA
ATCAAGAGATATTAGTTTACTTTACAtggcaatcaaactcatcattATTT
TGGGTATAACTGAAATTCTTGGGTTGATACAAATCAAGGACTCTGATCTG
GATGAGAGTGAAGCTGTCTTTAATTCAGTTTTTGGTATATTTTACGATAT
CACAAGATCATTGCGTGGAGTTTTAATATTTGTCGTCTACATGCTCAACG
AAAAGACATTGAAGCTGATTAAGAATGAactgaagaaaagaagaaaaaga
gaaataccTTATAGAGTAACATATACTGCTGATACAACACATTCTAATAT
AACGACTGAAAGCCATTCTTAACCTTCTCAGCTTCTGGTGGTTCCAATGG
ATTCTGACGAAGGAAAGTCTCAAAACGAGACATTTTAcgctttttaaaat
aattttaggaAATCATAGTTTACTTATTTCTCGACAGTTAGAAAATtgtt
aatcattttttttttcgatttggaTTGAATAAAGTTTTGC Run BLAST on NCBI protein sequence of TCONS_00006339-protein >TCONS_00006339-protein ID=TCONS_00006339-protein|Name=TCONS_00006339-protein|organism=Clytia hemisphaerica|type=polypeptide|length=908bp
MSSRMKILLCCYLFIVTSVQAQSNWWGNSKEAERNNTTIPVKNPFPLADF
LEITNISRLLSWKGLQCQSKINPYDCECQRSCQNTGSCCIDYLWNHNEAP
ITNTSSLESAKAYQKILDSSIKEMSCLPFFPFSTVIKQHFIMVSGCSESA
TATDKQKCINSEGNPQNEQIPVLGKDQYLYKNEHCAKCNGILVYKYEKIE
IFCDESLVDTKSTDFKSKTIFELLEQYPKGCSIKPSLGLQSDIIECQLDF
CPPVYASYCSIIAARFHPVSGIFSDSVKNVYCFKCNGGLVGPNAEVDATF
ETYVHGGGWSKTVDMNELMNKKSDQCLSDEVRSSYGDCIPMLCGFGYELL
NRQCVKTISGRNISNSLINISTASNDTTFVQKCLPQIHQSLALYIFFNST
FIEYVSAERYVKDVFEKHQITGDTMFILQDSGFVIQSPVITTNLSLLSIQ
KEVFTYFGISKIVLTPSIHNLPFVNTLDLSKYFEGGSKLCAFTSKQSIPR
PDTPCEILGTDSKLILEIYRNGSMKEKIDKCHFYYLDSSCFRQELKYKDF
SVENSSKVLTITTEDDTVVSYSPDKYAPNPITNGFEICIPNGTESSKSKY
PWQETINDASYIISLIGTIASIVSHSIFIILFYLVRPLRNTGGLYVLVLV
IFLLASDLIFIISINLTLNTGACKCFGILLYETLLLVCCWTIVVAFDMTL
KFTSSFDKGSSDDPQKTLRKRILIVLLLCTGLTLLVVTLNETDVLDFAFE
QNCWIGNSVLRIGFYFVPIVISYTLCIVDLAILIYSIYKAKQSSKNALGD
SKSRDISLLYMAIKLIIILGITEILGLIQIKDSDLDESEAVFNSVFGIFY
DITRSLRGVLIFVVYMLNEKTLKLIKNELKKRRKREIPYRVTYTADTTHS
NITTESHS Run BLAST on NCBI transcript from alignment at sc0000066:60368..63357 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006339 ID=TCONS_00006339|Name=TCONS_00006339|organism=Clytia hemisphaerica|type=transcript|length=2990bp|location=Sequence derived from alignment at sc0000066:60368..63357 (Clytia hemisphaerica)
GCAAAACTTTATTCAAtccaaatcgaaaaaaaaaatgattaacaATTTTC
TAACTGTCGAGAAATAAGTAAACTATGATTtcctaaaattattttaaaaa
gcgTAAAATGTCTCGTTTTGAGACTTTCCTTCGTCAGAATCCATTGGAAC
CACCAGAAGCTGAGAAGGTTAAGAATGGCTTTCAGTCGTTATATTAGAAT
GTGTTGTATCAGCAGTATATGTTACTCTATAAggtatttctctttttctt
cttttcttcagtTCATTCTTAATCAGCTTCAATGTCTTTTCGTTGAGCAT
GTAGACGACAAATATTAAAACTCCACGCAATGATCTTGTGATATCGTAAA
ATATACCAAAAACTGAATTAAAGACAGCTTCACTCTCATCCAGATCAGAG
TCCTTGATTTGTATCAACCCAAGAATTTCAGTTATACCCAAAATaatgat
gagtttgattgccaTGTAAAGTAAACTAATATCTCTTGATTTCGAATCTC
CCAAAGCATTCTTTGAGCTTTGTTTAGCCTTGTAAATACTGTAGATAAGA
ATAGCAAGGTCCACGATGCAGAGAGTGTATGATATTACGATCGGTACAAA
ATAAAATCCGATTCTTAACACCGAATTTCCGATCCAGCAATTTTGTTCAA
AAGCAAAGTCTAACACATCAGTCTCATTGAGGGTCACAACTAACAATGTT
AAACCAGTGCATAAAAGTAACACTATCAAAATCCTTTTTCGCAACGTCTT
TTGTGGGTCATCACTCGATCCTTTGTCAAAGGAGCTGGTGAATTTCAAAG
TCATATCAAAGGCCACAACAATGGTCCAGCAGCATACAAGTAATAAAGTT
TCGTACAGTAAGATACCGAAACATTTGCAAGCTCCAGTATTTAGAGTTAG
ATTGATGCTGATAATGAAAATCAAATCACTCGCTAGCAGGAAGATAACTA
GCACTAAAACATACAACCCACCTGTGTTTCGAAGGGGTCGAACGAGATAg
aataaaatgatgaaaatcgaATGTGAAACAATACTAGCGATGGTTCCGAT
AAGAGATATAATGTAACTCGCATCGTTGATTGTTTCCTGCCAAGGGTATT
TGCTTTTTGACGATTCAGTGCCATTCGGAATGCATATTTCAAATCCGTTT
GTTATGGGATTCGGAGCATATTTATCTGGTGAATAAGAAACTACCGTATC
ATCTTCAGTCGTTATTGTCAGTACCTTTGATGAATTTTCTACTGAGAAGT
CTTTATACTTCAGCTCTTGTCTGAAACAGCTTGAATCAAGATAATAAAAA
TGacatttgtcaattttttctttcatcgaACCATTCCTGTATATCTCAAG
AATTAGCTTACTATCCGTTCCAAGGATTTCGCAAGGTGTGTCTGGTCGTG
GTATTGATTGCTTGGAAGTGAACGCACACAATTTCGAACCGCCCTCAAAA
TATTTGGATAAGTCTAAAGTGTTAACGAACGGGAGATTATGTATCGAAGG
TGTTAGAACAATCTTTGAGATTCCAAAGTAGGTAAATACTTCCTTTTGAA
TGGAAAGCAATGATAAATTTGTTGTGATGACAGGAGATTGAATGACAAAT
CCGCTGTCTTGTAGTATGAACATTGTATCTCCAGTAATTTGATGTTTCTC
AAAAACATCTTTCACGTATCTTTCCGCTGAAACATATTCTATGAATGTTG
AGTTAAAGAAAATGTAGAGAGCAAGGCTTTGATGGATCTGCGGTaaacac
ttttgaacaaaagTAGTATCGTTAGATGCTGTAGAAATGTTAATCAAGCT
ATTGGATATGTTTCTACCAGATATGGTTTTGACACATTGTCGATTCAGTA
ATTCGTACCCAAACCCACATAGCATTGGGATACAGTCACCATAACTAGAT
CTCACTTCATCGGATAGACATTGGTCACTTTTCTTATTCATTAACTCATT
CATATCGACAGTTTTTGACCAACCTCCTCCATGGACATATGTTTCAAAGG
TAGCATCCACTTCAGCGTTTGGACCTACCAAGCCACCATTACATTTAAAA
CAATATACGTTTTTAACGGAGTCACTAAAAATTCCAGAAACTGGATGGAA
CCGTGCGGCAATTATACTGCAATAAGATGCATAAACAGGTGGGCAAAAAT
CCAGTTGACATTCTATGATATCGCTCTGTAAGCCTAGAGAAGGTTTAATT
GAACACCCTTTCGGGTATTGTTCCAAgagttcaaaaattgttttgctttt
aAAGTCCGTTGATTTGGTATCTACAAGAGACTCGTCGCAAAATATTTCGA
TCTTTTCATATTTGTAAACCAGGATTCCATTGCATTTCGCGCAATGTTCA
TTTTTATAGAGATACTGGTCTTTGCCAAGGACTGGGATTTGTTCGTTTTG
TGGGTTACCCTCACTGTTGATACATTTCTGTTTATCGGTAGCTGTTGCGG
ATTCAGAACATCCAGATACCATTATGAAATGCTGTTTGATTACTGTCGAG
AAAGGAAAAAATGGTAGACAGGACATTTCTTTGATGGACGAATCTAAAAT
CTTTTGGTAAGCTTTGGCACTCTCCAAGGATGACGTATTTGTTATTGGAG
CTTCATTGTGATTCCATAGGTAATCAATACAACAAGATCCAGTGTTTTGA
CAACTTCGTTGACATTCACAATCATAAGGATTGATCTTGGATTGACATTG
AAGTCCTTTCCAACTCAGTAATCTCGATATGTTAGTTATTTCTAGGAAGT
CTGCTAACGGGAAAGGGTTTTTGACTGGTATGGTTGTATTGTTCCTCTCC
GCCTCCTTGGAGTTTCCCCACCAATTCGATTGAGCTTGAACAGACGTTAC
AATGAATAGATAACAACAGAGTAAGATTTTCATTCTTGAAGACATCTTTA
AAATCtgtaatttattgaatttgaGTTCTGCTTCCTCGCGCAACAACAAC
AGCCTctaacaaatattttttcaaaaatatcaaaatgaga Coding sequence (CDS) from alignment at sc0000066:60368..63357 >TCONS_00006339 ID=TCONS_00006339|Name=TCONS_00006339|organism=Clytia hemisphaerica|type=CDS|length=2727bp|location=Sequence derived from alignment at sc0000066:60368..63357 (Clytia hemisphaerica)
TTAAGAATGGCTTTCAGTCGTTATATTAGAATGTGTTGTATCAGCAGTAT
ATGTTACTCTATAAggtatttctctttttcttcttttcttcagtTCATTC
TTAATCAGCTTCAATGTCTTTTCGTTGAGCATGTAGACGACAAATATTAA
AACTCCACGCAATGATCTTGTGATATCGTAAAATATACCAAAAACTGAAT
TAAAGACAGCTTCACTCTCATCCAGATCAGAGTCCTTGATTTGTATCAAC
CCAAGAATTTCAGTTATACCCAAAATaatgatgagtttgattgccaTGTA
AAGTAAACTAATATCTCTTGATTTCGAATCTCCCAAAGCATTCTTTGAGC
TTTGTTTAGCCTTGTAAATACTGTAGATAAGAATAGCAAGGTCCACGATG
CAGAGAGTGTATGATATTACGATCGGTACAAAATAAAATCCGATTCTTAA
CACCGAATTTCCGATCCAGCAATTTTGTTCAAAAGCAAAGTCTAACACAT
CAGTCTCATTGAGGGTCACAACTAACAATGTTAAACCAGTGCATAAAAGT
AACACTATCAAAATCCTTTTTCGCAACGTCTTTTGTGGGTCATCACTCGA
TCCTTTGTCAAAGGAGCTGGTGAATTTCAAAGTCATATCAAAGGCCACAA
CAATGGTCCAGCAGCATACAAGTAATAAAGTTTCGTACAGTAAGATACCG
AAACATTTGCAAGCTCCAGTATTTAGAGTTAGATTGATGCTGATAATGAA
AATCAAATCACTCGCTAGCAGGAAGATAACTAGCACTAAAACATACAACC
CACCTGTGTTTCGAAGGGGTCGAACGAGATAgaataaaatgatgaaaatc
gaATGTGAAACAATACTAGCGATGGTTCCGATAAGAGATATAATGTAACT
CGCATCGTTGATTGTTTCCTGCCAAGGGTATTTGCTTTTTGACGATTCAG
TGCCATTCGGAATGCATATTTCAAATCCGTTTGTTATGGGATTCGGAGCA
TATTTATCTGGTGAATAAGAAACTACCGTATCATCTTCAGTCGTTATTGT
CAGTACCTTTGATGAATTTTCTACTGAGAAGTCTTTATACTTCAGCTCTT
GTCTGAAACAGCTTGAATCAAGATAATAAAAATGacatttgtcaattttt
tctttcatcgaACCATTCCTGTATATCTCAAGAATTAGCTTACTATCCGT
TCCAAGGATTTCGCAAGGTGTGTCTGGTCGTGGTATTGATTGCTTGGAAG
TGAACGCACACAATTTCGAACCGCCCTCAAAATATTTGGATAAGTCTAAA
GTGTTAACGAACGGGAGATTATGTATCGAAGGTGTTAGAACAATCTTTGA
GATTCCAAAGTAGGTAAATACTTCCTTTTGAATGGAAAGCAATGATAAAT
TTGTTGTGATGACAGGAGATTGAATGACAAATCCGCTGTCTTGTAGTATG
AACATTGTATCTCCAGTAATTTGATGTTTCTCAAAAACATCTTTCACGTA
TCTTTCCGCTGAAACATATTCTATGAATGTTGAGTTAAAGAAAATGTAGA
GAGCAAGGCTTTGATGGATCTGCGGTaaacacttttgaacaaaagTAGTA
TCGTTAGATGCTGTAGAAATGTTAATCAAGCTATTGGATATGTTTCTACC
AGATATGGTTTTGACACATTGTCGATTCAGTAATTCGTACCCAAACCCAC
ATAGCATTGGGATACAGTCACCATAACTAGATCTCACTTCATCGGATAGA
CATTGGTCACTTTTCTTATTCATTAACTCATTCATATCGACAGTTTTTGA
CCAACCTCCTCCATGGACATATGTTTCAAAGGTAGCATCCACTTCAGCGT
TTGGACCTACCAAGCCACCATTACATTTAAAACAATATACGTTTTTAACG
GAGTCACTAAAAATTCCAGAAACTGGATGGAACCGTGCGGCAATTATACT
GCAATAAGATGCATAAACAGGTGGGCAAAAATCCAGTTGACATTCTATGA
TATCGCTCTGTAAGCCTAGAGAAGGTTTAATTGAACACCCTTTCGGGTAT
TGTTCCAAgagttcaaaaattgttttgcttttaAAGTCCGTTGATTTGGT
ATCTACAAGAGACTCGTCGCAAAATATTTCGATCTTTTCATATTTGTAAA
CCAGGATTCCATTGCATTTCGCGCAATGTTCATTTTTATAGAGATACTGG
TCTTTGCCAAGGACTGGGATTTGTTCGTTTTGTGGGTTACCCTCACTGTT
GATACATTTCTGTTTATCGGTAGCTGTTGCGGATTCAGAACATCCAGATA
CCATTATGAAATGCTGTTTGATTACTGTCGAGAAAGGAAAAAATGGTAGA
CAGGACATTTCTTTGATGGACGAATCTAAAATCTTTTGGTAAGCTTTGGC
ACTCTCCAAGGATGACGTATTTGTTATTGGAGCTTCATTGTGATTCCATA
GGTAATCAATACAACAAGATCCAGTGTTTTGACAACTTCGTTGACATTCA
CAATCATAAGGATTGATCTTGGATTGACATTGAAGTCCTTTCCAACTCAG
TAATCTCGATATGTTAGTTATTTCTAGGAAGTCTGCTAACGGGAAAGGGT
TTTTGACTGGTATGGTTGTATTGTTCCTCTCCGCCTCCTTGGAGTTTCCC
CACCAATTCGATTGAGCTTGAACAGACGTTACAATGAATAGATAACAACA
GAGTAAGATTTTCATTCTTGAAGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006339-exon-sc0000066-1491911889:60368..63357 | TCONS_00006339-exon-sc0000066-1491911889:60368..63357 | Clytia hemisphaerica | exon |
| TCONS_00006339-exon-sc0000066-1510915933:60368..63357 | TCONS_00006339-exon-sc0000066-1510915933:60368..63357 | Clytia hemisphaerica | exon |
| TCONS_00006339-exon-sc0000066-1575043694:60368..63357 | TCONS_00006339-exon-sc0000066-1575043694:60368..63357 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000066 | supercontig | sc0000066:60368..63357 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
| GO:0004888 | transmembrane signaling receptor activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
| GO:0007166 | cell surface receptor signaling pathway |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007166 |
cell surface receptor signaling pathway |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
| molecular_function |
GO:0004888 |
transmembrane signaling receptor activity |
Blast
The following BLAST results are available for this feature:
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