Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006335 ID=TCONS_00006335|Name=TCONS_00006335|organism=Clytia hemisphaerica|type=transcript|length=1552bpRun BLAST on NCBI transcript from alignment at sc0000066:699957..706472- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006335 ID=TCONS_00006335|Name=TCONS_00006335|organism=Clytia hemisphaerica|type=transcript|length=6516bp|location=Sequence derived from alignment at sc0000066:699957..706472- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Blast
BLAST of TCONS_00006335 vs. Swiss-Prot (Human)
Match: UBP20 (Ubiquitin carboxyl-terminal hydrolase 20 OS=Homo sapiens GN=USP20 PE=1 SV=2) HSP 1 Score: 145.591 bits (366), Expect = 9.455e-37 Identity = 79/209 (37.80%), Postives = 115/209 (55.02%), Query Frame = 3 Query: 3 VLFYSLRDNRAEESRKDILNEINESPVDPLGIR-YISKEWFTRYNACVKPGPVSNYELLCQHGAIDSQDFERVKDRVIPVPASAAHTLIKRFGGGPDISSLDECMHCK----ELARRQDYELDTFNKLHERFQEEQDEVAVSYRISVRWFNTWRAFANAETKEIPGEIDNSDIMPDENQGN----KGDTYGQISGETWAFFHTRYGGGP 602 VLFY A R+ +++ +P +R Y+S+EW ++N +PGP++N LC HG I + + D V+ +P + L RFGGGP ++ L C C+ LA+R+ E+DTF KL++ FQ E+ V Y IS++WF W AF + E PG IDNS I + G+ +G YGQIS ETW + ++ YGGGP Sbjct: 679 VLFYRKSSEEAMRERQQVVSLAAMR--EPSLLRFYVSREWLNKFNTFAEPGPITNQTFLCSHGGIPPHKYHYIDDLVVILPQNVWEHLYNRFGGGPAVNHLYVCSICQVEIEALAKRRRIEIDTFIKLNKAFQAEESP-GVIYCISMQWFREWEAFVKGKDNEPPGPIDNSRIAQVKGSGHVQLKQGADYGQISEETWTYLNSLYGGGP 884 The following BLAST results are available for this feature:
BLAST of TCONS_00006335 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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