TCONS_00006331 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00006331
Unique Name	TCONS_00006331
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2501

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000066:683153..688927-

transcript sequence

>TCONS_00006331 ID=TCONS_00006331|Name=TCONS_00006331|organism=Clytia hemisphaerica|type=transcript|length=2501bp
TGTGCTCACATAAATGCTAGACAACTTAATTACCTGTTATCTTGTTGATA
TGATAAATAATATTCTTTTGGATGAAAATGGCTCAAAATCTTTCAAAGAA
AATCAAGATTACCAAATTCCTACTTTTATCTTACATCATTTTATTCTTTT
TACTTGGATCAGCACTGTTAGTACTAGCCATGGAAAGTAGATTTGGAAAG
CAAGATTATATCACAGTCACTGAAAAAGTCAGTTATATCACTGGATACAT
GGCAGCAAACACCTTCTGTATTATCATTGGTGTGATCATGGTGATTGTTA
GTTTCTTTGGATGTTGTGGTGTCATTGCAGAACATTCAATAATGGTTCTT
GTTCTTTTCGTTTTCATGGcaattattttcatctttgaAATGGCCATTTG
TATATATGGGTTTGCTAAAAGTGATCAGATAAAGGATCGTTTAGAATCTA
CATACCTAAAAAACATTCAAGCTCTTTATACCAATGACACTTGGAGTCAA
CATGCGGCAGCTATCGACAATTTTCAAAGGAATAAACAATGTTGCGGTTA
CCATGGTATTGAGGATTGGGACGATTCACATTTCATGAAGGAAAATGGTC
ATTATCCAATATCATGCTGTAAAGAGTTGAATTGTTCCACAGAAGCAGGG
TGCTTTAAAGAAGTGGTTAAATGGTTGACTAGGAATATGGAGATTATTGG
TATCGTCAATTTAACCTTTGGCATTCTTCAGATATTTGGCATGGTGTTGA
CAATGATTTTATATTGTTTCGTCAAAGATATGCTTGTTATTACTTCCTGA
GTGAAGGAGTTTTTAAACAAACTATTgctgttaaacaatttttgAGAAGT
TGACAAATGTGTATCTTGAGGCTTCAATGTTTTGAAAGAGTATAACTTAT
CACTTAATAATGGTTTAGCTGATATGTAGGTTcaaccagtgtttttataa
cagtctgtaaaatatctaatccattttcatttgtttttacaGATAAAATC
AGTAGTAAAAAATAAACGTAATAGAAATGTCGAAATCTTGTTCATGTTTG
AAGTACCTTCTCTTCATTTTCAACTTCTTGTTCTTTTTGATTGGCTGTGC
CATCCTTGGACTTGGAATATGGTTGAAAGTTGAGAAAGGTGATTACGTAG
ACATCTCTCAATATGATTACCTGTCAGCAGCAAATGTGGCAATCGCTATT
GGTTCTGTTATTCTGGTCGTTTCATTTCTTGGATGTTGTGGCTCCATCAA
AGAAATTGCTCCTATGTTGATCGCATTCTTTGTGTTACTGGTGATCATAT
TTTTGCTGGAAATTGCTATCGGTATTTTCGCTTATGTCCAGAAAGACGAT
ttGGAAACAGAACTGCAGAAGGATTTGACTCAAGCAATGCTGAATAAATA
TGGTGAATCTGGTGAAGGTGGTTTGACTAAGGCTGTAGATGATTTTCAAA
GAGATTTTCATTGTTGTGGCATTGATATATATACTGATTGGAGGGGTTCT
AAATACTATCAAAAGTTTGGTAAATTTCCGCAAACTTGTTGTACAGATGG
ACTAACAAAGGCATGTCCCACTGAGGTTGTTGCTGAATGGCATCGTGTTT
ACAAGCCTGAAgGATGTTACATCAAGCTGAAAGATTTCTTGAAAGATAAT
TTCCTTTATATTGGAGTCACTGCAATCGTCTTTGCAATATTccaggtACT
GGGAATGATATTTTCAATGATTCTTTACCGAAGCATTCGATGAGGAAAAT
AATGGAGAGAGAAAATTGTCTGTATTGCATTGTTCTGGAAACAGATGACG
ATGGTATTGGAAGGATAGTGATTGTATCTTGCTGCTCCTGGTGAGGCATG
CAGACTCCAGGCTATTGGTGGTCATATGTTTGGTTGACTATGTTAAGATG
GAGATATTGTATTGGCCAGAAAGTTTAACATATTAAATGCTGGTTTGATT
TGAATTACTATTGTGGAttggaaagtttttgaattcaaagtgaataaaaa
tgaactatcaaaaactgttaaaaaaatgttttgggtGTTGGAAGTGAAAA
TTTATTGAGAAAATAATACAATCTACTTCACTATTTCATTggtttttaat
tgtttttagttttcatatatatttttttaattttgatttattaaacTTAT
TTAGATTCATACCATGTCACTATCAAAATGTGTAAAAGTATCTATTATTG
ATTTTTGTCTTTAAATACTTGTGCTGTTTTCATAAAATATGAACTAatct
tttatatattttttatttccacTTATCTTTAAGTCGGCTACTGTAAATAt
catttttctgctttttatcaaaaattctgtttatttttattaaggTAATA
TTTATTACATTTGATTATATaattcaaaagtatcaaaagattttccacct
ttcttcaattttgtttATAATGTAGATTTTAACTTCGATTTTAAGCTTCC
TTTATTATTTGGGATGACACTTCATGGTGCTACAATAATTCCTGGATCCT
C

Run BLAST on NCBI

transcript from alignment at sc0000066:683153..688927-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00006331 ID=TCONS_00006331|Name=TCONS_00006331|organism=Clytia hemisphaerica|type=transcript|length=5775bp|location=Sequence derived from alignment at sc0000066:683153..688927- (Clytia hemisphaerica)
TGTGCTCACATAAATGCTAGACAACTTAATTACCTGTTATCTTGTTGATA
TGATAAATAATATTCTTTTGGATGAAAATGGCTCAAAATCTTTCAAAGAA
AATCAAGATTACCAAATTCCTACTTTTATCTTACATCATTTTATTCTTTG
TAAGTTTTGTTTATTGTCCCTTTCACTTTCATATTTTCCAAAAAAAAATT
ACTGAAACCCACAGTAAATAACTTAAAATTTCATAAAAAAGAGTAAGAAA
CATGAGTGCTTGTTACATTTTATCTGAAAATTACTCTATCGGTTCAATAT
TTTAGTTACTTGGATCAGCACTGTTAGTACTAGCCATGGAAAGTAGATTT
GGAAAGCAAGATTATATCACAGTCACTGAAAAAGTCAGTTATATCACTGG
ATACATGGCAGCAAACACCTTCTGTATTATCATTGGTGTGATCATGGTGA
TTGTTAGTTTCTTTGGATGTTGTGGTGTCATTGCAGAACATTCAATAATG
GTTCTTGTTGTAAGTTCAACTGATTTTTTGTTCATACACAGCTATTTGGT
CTTAAATGATTTTATCAAATAACTAAACGCTCACCCTATTTTCACTTTTG
CCCTTCTGGATTTGACTGGTTTAAAAATCAGATGGAATAAAATTGAACAT
CGAGTATTTTGTCTGTAGTGGCTTTGTATTTAAAAACTCAAGATGTTTGT
AATGAAAGGGAGAGATGAAATCTGTTAAGTAATCAAAGTTCTTTCACAGA
ATTTTTTTTCTCTCATCTTATCAGGCAAAATGATCTTATGTTAGCTTTTA
ACCAAAGAACTATTTTATATGTGAGTTGAATCAGTAATGAATCACTCTTC
ATCGCAGGGGCTCCATTCAAATCAAAACCTTATCAATTCCTGCTAAGTTG
TTTGAATATTTCTTGACAATATTTTTCTAATCCTCTTTGAAGGGTCTACT
TGTTATGTTTTCCCTCACGTTACATTTTATATCATCCTCTCTCCATCTTA
GTGTGGTTTTATGAAAATGATGAATTAAAAATAGTCCTCTTTCTTATGTG
AATGTATATTGTAAGTTCTAGTACTGTTTTCAAAGATGTTCTGGTCTAGT
ACTTTTGTCTAATTTTCTTTCTTTACAGCTTTTCGNCAAAGATGTTCTGG
TCTAGTACTTTTGTCTAATTTTCTTTCTTTACAGCTTTTCGTTTTCATGG
CAATTATTTTCATCTTTGAAATGGCCATTTGTATATATGGGTTTGCTAAA
AGTGATCAGATAAAGCTTGTCAAGAATGTGATATATCAAACAATAACAAA
TCTTATAATCACATTTTATGTCTACTCTATGTTAACATTTAATGTCAACT
AACTTAATGCTCTAAACTGATTTACCAAAAGGACATGATTTCTCTCTAAT
CAACTGAAAACTATCAGTTGTTTAGGATTTTGTGTTTTCTCTGGTATATT
ACTGTCTCGGTGTTTATTAGATATTTTTTGCATTTTACTTAGTTAAGGGA
TCGTTTAGAATCTACATACCTAAAAAACATTCAAGCTCTTTATACCAATG
ACACTTGGAGTCAACATGCGGCAGCTATCGACAATTTTCAAAGGAATAAA
CAATGTTGCGGTTACCATGGTATTGAGGATTGGGACGATTCACATTTCAT
GAAGGAAAATGGTCATTATCCAATATCATGCTGTAAAGAGTTGAATTGTT
CCACAGAAGCAGTTAGATCATATAAAAAGGCGCATTTCTACCAAAAAGTA
AAGTTGATTTTGATCCTCACTACCTTTAGATTTTAAAACAATGAACAGCA
TTTTTACTATCCAGATATTTGATGTGTAAATCTCAAAAGGAAGTTTTCTT
TTGATTACTGTCTTTGTCATGCCTTCTCACTCCATCAATTTTCATATTTT
TTGCTTTAGGGGTGCTTTAAAGAAGTGGTTAAATGGTTGACTAGGAATAT
GGAGATTATTGGTATCGTCAATTTAACCTTTGGCATTCTTCAGGTAACAT
CCATTAGATTCAATTTCCAAAAAGGTTTGAAAACTAAGACTTCCATTTCA
GTGTCCTGAAAATATTTGGTTTTCTTGATGATTGATTATTTTGCTGGATT
TTTCTACTGATATTTTAGCAAAACCTGTTTTTCACGCTAAGGCTAAAATG
ACAAAGAGGTGAAAAGTAAACACATACATTTGGCAGATTTTGTGGGGTTA
AGTTGAAGCCACAAAGTTGAATATCGACCAAATTTTTAAAATCTAATACC
AGATTCTCTCTGCCATTTGTTCTTTGAAATCATGAGTTATATTCAGGTTA
TATTTTAGTGAAACAGTTCTGTGTATATTAAATCCTTGTGGAGAATTACA
ATAACTTCCTGATAACAATCACATCATCTTAGCNTAAATCCCTGTGGAGA
ATTATAATAACTTCCTGATAACAATCACATCATCTTAGCATCACATTCAG
AAATCTCTTGAAGAAATTGATCAATTAACTATTTTTCTTTTGCTTTCTTA
GATATTTGGCATGGTGTTGACAATGATTTTATATTGTTTCGTCAAAGATA
TGCTTGTTATTACTTCCTGAGTGAAGGAGTTTTTAAACAAACTATTGCTG
TTAAACAATTTTTGAGAAGTTGACAAATGTGTATCTTGAGGCTTCAATGT
TTTGAAAGAGTATAACTTATCACTTAATAATGGTTTAGCTGATATGTAGG
TTCAACCAGTGTTTTTATAACAGTCTGTAAAATATCTAATCCATTTTCAT
TTGTTTTTACAGATAAAATCAGTAGTAAAAAATAAACGTAATAGAAATGT
CGAAATCTTGTTCATGTTTGAAGTACCTTCTCTTCATTTTCAACTTCTTG
TTCTTTGTAAGTAAATTGTAATAACCAAATGAGACAGATATCTATCCGTA
TCTTCTTATATTTTCTTGTAATTTTATACTACCATGTAGTCAAGGTGTAT
TCAATACCTTCTTTTGATAAAGGTGGTTGTGCTTTCTTGTTCTTGTTGAA
TTATCTGGTTTTTCTTTCCTAACAGTTGATTGGCTGTGCCATCCTTGGAC
TTGGAATATGGTTGAAAGTTGAGAAAGGTGATTACGTAGACATCTCTCAA
TATGATTACCTGTCAGCAGCAAATGTGGCAATCGCTATTGGTTCTGTTAT
TCTGGTCGTTTCATTTCTTGGATGTTGTGGCTCCATCAAAGAAATTGCTC
CTATGTTGATCGCAGTAGGTTCAAATTCCCACTTAGTGATATTTTGCTGT
CTTTTTTATTTTACATTAATGATGATGAAATATTTATTAGTCATTTATTT
TTCTGCTTTTTACTGTCCCATTATTCATCAGATATTACACACAAGTATCT
TTTTGACAATTTATTCTCTCTTTTACGACTAGAAATACTAATGTTGTTAA
ACAGCATTACATGGAAATCGTTGTTCTCATTGTTAACAATTGCAGGCATA
TGATCAACGACTAGAGGCAACCCAATTAAGTCATCTTCAAATCTTTGCAA
CCTTCAATTGAAAGAAAGAATGAAACACTCCCGATTCATAAAGCTTTACT
TTTATTTAGTTCTTTGTGTTACTGGTGATCATATTTTTGCTGGAAATTGC
TATCGGTATTTTCGCTTATGTCCAGAAAGACGATGTAAGTAAAGACTATT
ACTGTTTGACTGTCTTTGAACTGTTCTTGTTGTACGACTTCAATCCTTCA
TAATGGGCTCTTCCAGGAAAAATCGGGTAAGGGGGTGGAGGATAAGTTGT
CCAGGGGTCCGAAAAAATGTTCTAAAAATTGCTTTGTCCAGGGGGTAAAT
CTGCGATGCTAGTAAATTTTTATGTCCAGGAGATTAAATTGATGATTGTT
CATGGGTATAATCCATGTCCATGGGTTTAAAAATGAAAATGCCCAGGGGT
AATTCCCACCCCCAATGAACGGATTTTTTCTGGAAGACCTCATATTTATG
TTGATTCACAATACCACAAACTACCTAGTGAATATGTCTTCTAAAGTTAA
TTCTTTTGCCCTGATTATTTGGAATTAGTTTGCAACTAGGACATTCTCAT
TCCAACCCCATCGTTTATAGATTTGGTTTGATTTGATTTCGTTTGATAGA
TTACTTATTCCAATCCTCCTGCGTTTTCAAAAGTTTTACAATCTGGAAAT
CTTGCTGAAAATCTGGATTCAAAGTGTACTGTGTTTGGACAAAGACATAA
CAGTAGCTATATAAACATTAACTTGATTTCATTTTTTAGTTGGAAACAGA
ACTGCAGAAGGATTTGACTCAAGCAATGCTGAATAAATATGGTGAATCTG
GTGAAGGTGGTTTGACTAAGGCTGTAGATGATTTTCAAAGAGATTTTCAT
TGTTGTGGCATTGATATATATACTGATTGGAGGGGTTCTAAATACTATCA
AAAGTTTGGTAAATTTCCGCAAACTTGTTGTACAGATGGACTAACAAAGG
CATGTCCCACTGAGGTTGTTGCTGAATGGCATCGTGTTTACAAGCCTGAA
GTAAGTGTTTTTAATGGGATAGTTTTACTCTACTTCCTGTTAGCATAGCT
TTAGATTTTTTTTCTTTTAAAAATAATTACTATCTTATTGAAACTTAACC
TATTGCAAATTGGTTCAGACTTTTGCATTTCATTTAATATTCAACATTTT
ATTATTTTTGTAGGGATGTTACATCAAGCTGAAAGATTTCTTGAAAGATA
ATTTCCTTTATATTGGAGTCACTGCAATCGTCTTTGCAATATTCCAGGTA
AAAGAAAAAATGCTGAGTTTGTCAATAGTTTGAAATTTGTTCATCATTTT
GTGAAGCAATTTTTGTAGAAAAAAAGCATCATGATATAAAGTTATTTTTA
AAGTTCTTTAAGATTTCTCTTGATGTACTTAAAATTTGATTCCAGATAAT
ACATCAGTAAATACCATTCAATAAAGCTTCATAGATTGACTTCAGATTCC
GCAATTTTTTTCTTTATAGGTACTGGGAATGATATTTTCAATGATTCTTT
ACCGAAGCATTCGATGAGGAAAATAATGGAGAGAGAAAATTGTCTGTATT
GCATTGTTCTGGAAACAGATGACGATGGTATTGGAAGGATAGTGATTGTA
TCTTGCTGCTCCTGGTGAGGCATGCAGACTCCAGGCTATTGGTGGTCATA
TGTTTGGTTGACTATGTTAAGATGGAGATATTGTATTGGCCAGAAAGTTT
AACATATTAAATGCTGGTTTGATTTGAATTACTATTGTGGATTGGAAAGT
TTTTGAATTCAAAGTGAATAAAAATGAACTATCAAAAACTGTTAAAAAAA
TGTTTTGGGTGTTGGAAGTGAAAATTTATTGAGAAAATAATACAATCTAC
TTCACTATTTCATTGGTTTTTAATTGTTTTTAGTTTTCATATATATTTTT
TTAATTTTGATTTATTAAACTTATTTAGATTCATACCATGTCACTATCAA
AATGTGTAAAAGTATCTATTATTGATTTTTGTCTTTAAATACTTGTGCTG
TTTTCATAAAATATGAACTAATCTTTTATATATTTTTTATTTCCACTTAT
CTTTAAGTCGGCTACTGTAAATATCATTTTTCTGCTTTTTATCAAAAATT
CTGTTTATTTTTATTAAGGTAATATTTATTACATTTGATTATATAATTCA
AAAGTATCAAAAGATTTTCCACCTTTCTTCAATTTTGTTTATAATGTAGA
TTTTAACTTCGATTTTAAGCTTCCTTTATTATTTGGGATGACACTTCATG
GTGCTACAATAATTCCTGGATCCTC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_003609	XLOC_003609	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000066	supercontig	sc0000066:683153..688927 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0.0115231	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Blast

[Close]

BLAST of TCONS_00006331 vs. Swiss-Prot (Human)
Match: CD151 (CD151 antigen OS=Homo sapiens GN=CD151 PE=1 SV=3)

HSP 1 Score: 126.331 bits (316), Expect = 8.556e-32
Identity = 86/222 (38.74%), Postives = 126/222 (56.76%), Query Frame = 1

Query: 1093 GCAILGLGIWLKVEKGDYVDI-SQYDYLSAANVAIAIGSVILVVSFLGCCGSIKEIAPMXXXXXXXXXXXXXXXXXXGIFAYVQKDDLETELQKDLTQAMLNKYGESGEGGLTKAVDDFQRDFHCCGIDIYTDWRGSKY--YQKFGK--FPQTCCTDGLTKACPTEVVAEWHRVYKPE-GCYIKLKDFLKDNFLYIGVTAIVFAIFQVLGMIFSMILYRSIR 1740
            G A++ +GIW    K DY+ + +   YL+ A + +  G+V++V   LGCC + KE   +L  +F+LL+IIFLLEI  GI AY     L TEL+++L   M  +Y + G   +T AVD  Q++FHCCG +   DWR S++   Q+ G    P +CC   +   C     A    +YK E GC  KL+ F++++   IG   I  A  QV GMIF+  LYRS++
Sbjct:   31 GLAVMAVGIWTLALKSDYISLLASGTYLATAYILVVAGTVVMVTGVLGCCATFKERRNLLRLYFILLLIIFLLEIIAGILAYAYYQQLNTELKENLKDTMTKRYHQPGHEAVTSAVDQLQQEFHCCGSNNSQDWRDSEWIRSQEAGGRVVPDSCCKT-VVALCGQRDHAS--NIYKVEGGCITKLETFIQEHLRVIGAVGIGIACVQVFGMIFTCCLYRSLK 249

The following BLAST results are available for this feature:

BLAST of TCONS_00006331 vs. Swiss-Prot (Human)

BLAST of TCONS_00006331 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CD151	8.556e-32	38.74	CD151 antigen OS=Homo sapiens GN=CD151 PE=1 SV=3	[more]

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TCONS_00006331 (transcript) - C. hemisphaerica