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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006327 ID=TCONS_00006327|Name=TCONS_00006327|organism=Clytia hemisphaerica|type=transcript|length=920bp
GCGATTGTCCGAGATAAATCCAACAATACTTTGGACAGTGTAGAAAATAC
TTTTTATCACTTAAAAACACTCAATGACGGATTTTATCGAATCGAAGATC
GGGATGGTAAATTTGTATACCCAGTTTGCCTTCAAAGAGCACTTTACCAT
ACACTGAATATTAACGAAAACGAACGCGATTctgatttttatttcaataa
caTCGGCAAAGAAAAAGCCAGGTTAAGAGAACAGGATGCCAAAAAGTTTA
GTGTGGATGAGAAACCAGAGGCGCCAAGTGCATCTATATCATCAGCAACA
AAAGATAAAGTTATCGCATTGCGTTTGGAAAAATGGCCGATGAATATTAA
GAAAGACTTTCTCGAcagaaaaacaaacttcaagGAATTTTCAGAAATTC
CGTTGTTCCTGATACCGAAAAGTCATCCTGAAAGTCAAAACCCGATGGTT
GAATGGAGATTGTCATTTTCATTGGTCGAGAAAGAAATTCTCCTAAATCT
CCCATTGTCCTGGAGAAAGGTTTATTTGATCATAAAATCTCAATTCAAAG
AATCTCACGAGCAATCTTTTNATTCAAAGAGTTCCACGAGCAACCCTTTA
GGAGAAGGATAGAGAATGGCCGGGAAATATTACCAGATCAACAGTATTAC
CAAAGTCCGTTGGAAAGTTAtcacatcaaaacagttttacTGTGGCTTTA
CGAGAAACATACTgactttgatgaaaatgatatcaTAGGATTATTGAAAC
TTGTTGTCGATCGTTTATTAGAAGCATTCTCGGAGATGAAGCTGCCAAAC
TATTTCATAccgggtcaaaatattttgagaaatgcacaaaaatatgattt
ttataaaattgagaGAGTCAAAGAAATGTTAGAAAAGATCAAGCTCGTCG
ATAATCTTATGTTCCTTTAT Run BLAST on NCBI protein sequence of TCONS_00006327-protein >TCONS_00006327-protein ID=TCONS_00006327-protein|Name=TCONS_00006327-protein|organism=Clytia hemisphaerica|type=polypeptide|length=203bp
AIVRDKSNNTLDSVENTFYHLKTLNDGFYRIEDRDGKFVYPVCLQRALYH
TLNINENERDSDFYFNNIGKEKARLREQDAKKFSVDEKPEAPSASISSAT
KDKVIALRLEKWPMNIKKDFLDRKTNFKEFSEIPLFLIPKSHPESQNPMV
EWRLSFSLVEKEILLNLPLSWRKVYLIIKSQFKESHEQSFXSKSSTSNPL
GEG Run BLAST on NCBI transcript from alignment at sc0000066:643474..644864- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006327 ID=TCONS_00006327|Name=TCONS_00006327|organism=Clytia hemisphaerica|type=transcript|length=1391bp|location=Sequence derived from alignment at sc0000066:643474..644864- (Clytia hemisphaerica)
GCGATTGTCCGAGATAAATCCAACAATACTTTGGACAGTGTAGAAAATAC
TTTTTATCACTTAAAAACACTCAATGACGGATTTTATCGAATCGAAGATC
GGGATGGTAAATTTGTATACCCAGTTTGCCTTCAAAGAGCACTTTACCAT
ACACTGAATATTAACGAAAACGAACGCGATTCTGATTTTTATTTCAATAA
CATCGGCAAAGAAAAAGCCAGGTTAAGAGAACAGGATGCCAAAAAGTTTA
GTGTGGATGAGAAACCAGAGGCGCCAAGTGCATCTATATCATCAGCAACA
AAAGATAAAGTTATCGCATTGCGTTTGGAAAAATGGCCGATGAATATTAA
GAAAGACTTTCTCGACAGAAAAACAAACTTCAAGGAATTTTCAGGTTAGT
ATAATTTTGAGTGAAATTTCCATTCTAAAGCATATCTCTTGTACCGAAAA
TTTCTTACAGTACAGTTAGTTGATGATCTGGTCATTTTCAATTTTTGCGA
AGGGAATTGGGTTTTTATCAAGGGAGCATATCGAGTAGTAGAGCGTCGTT
TAAGTGGGAAGGTGGGTTTAATGAGTTTTGCAGCGGGATAAAGCCCCAGG
GTATTATTTTACGGGGGATAATGCTAGATAGCCTGATTGTTCATTGGGGA
GGGTTTCCCAGCGGGTTTGGCAAATGGACGAATGTTTGATTACTACACAT
GACTTCCATAATGGCATGACGTCGTATTTAAGTATGTGGATATTTGTTCA
ATTTTTTTTGCCGGTCTATTAAGAGCTTAAAAATATTACTTACTTTACTG
GAGCTGAGTCACCCGATAGATTTTTTTTTTCGTTTTTGTAAGATTTCATT
AATTATTTGATTTAGAAATTCCGTTGTTCCTGATACCGAAAAGTCATCCT
GAAAGTCAAAACCCGATGGTTGAATGGAGATTGTCATTTTCATTGGTCGA
GAAAGAAATTCTCCTAAATCTCCCATTGTCCTGGAGAAAGGTTTATTTGA
TCATAAAATCTCAATTCAAAGAATCTCACGAGCAATCTTTTNATTCAAAG
AGTTCCACGAGCAACCCTTTAGGAGAAGGATAGAGAATGGCCGGGAAATA
TTACCAGATCAACAGTATTACCAAAGTCCGTTGGAAAGTTATCACATCAA
AACAGTTTTACTGTGGCTTTACGAGAAACATACTGACTTTGATGAAAATG
ATATCATAGGATTATTGAAACTTGTTGTCGATCGTTTATTAGAAGCATTC
TCGGAGATGAAGCTGCCAAACTATTTCATACCGGGTCAAAATATTTTGAG
AAATGCACAAAAATATGATTTTTATAAAATTGAGAGAGTCAAAGAAATGT
TAGAAAAGATCAAGCTCGTCGATAATCTTATGTTCCTTTAT Coding sequence (CDS) from alignment at sc0000066:643474..644864- >TCONS_00006327 ID=TCONS_00006327|Name=TCONS_00006327|organism=Clytia hemisphaerica|type=CDS|length=1224bp|location=Sequence derived from alignment at sc0000066:643474..644864- (Clytia hemisphaerica)
AAATTCCGTTGTTCCTGATACCGAAAAGTCATCCTGAAAGTCAAAACCCG
ATGGTTGAATGGAGATTGTCATTTTCATTGGTCGAGAAAGAAATTCTCCT
AAATCTCCCATTGTCCTGGAGAAAGGTTTATTTGATCATAAAATCTCAAT
TCAAAGAATCTCACGAGCAATCTTTTNATTCAAAGAGTTCCACGAGCAAC
CCTTTAGGAGAAGGATAGGCGATTGTCCGAGATAAATCCAACAATACTTT
GGACAGTGTAGAAAATACTTTTTATCACTTAAAAACACTCAATGACGGAT
TTTATCGAATCGAAGATCGGGATGGTAAATTTGTATACCCAGTTTGCCTT
CAAAGAGCACTTTACCATACACTGAATATTAACGAAAACGAACGCGATTC
TGATTTTTATTTCAATAACATCGGCAAAGAAAAAGCCAGGTTAAGAGAAC
AGGATGCCAAAAAGTTTAGTGTGGATGAGAAACCAGAGGCGCCAAGTGCA
TCTATATCATCAGCAACAAAAGATAAAGTTATCGCATTGCGTTTGGAAAA
ATGGCCGATGAATATTAAGAAAGACTTTCTCGACAGAAAAACAAACTTCA
AGGAATTTTCAGAAATTCCGTTGTTCCTGATACCGAAAAGTCATCCTGAA
AGTCAAAACCCGATGGTTGAATGGAGATTGTCATTTTCATTGGTCGAGAA
AGAAATTCTCCTAAATCTCCCATTGTCCTGGAGAAAGGTTTATTTGATCA
TAAAATCTCAATTCAAAGAATCTCACGAGCAATCTTTTNATTCAAAGAGT
TCCACGAGCAACCCTTTAGGAGAAGGATAGGCGATTGTCCGAGATAAATC
CAACAATACTTTGGACAGTGTAGAAAATACTTTTTATCACTTAAAAACAC
TCAATGACGGATTTTATCGAATCGAAGATCGGGATGGTAAATTTGTATAC
CCAGTTTGCCTTCAAAGAGCACTTTACCATACACTGAATATTAACGAAAA
CGAACGCGATTCTGATTTTTATTTCAATAACATCGGCAAAGAAAAAGCCA
GGTTAAGAGAACAGGATGCCAAAAAGTTTAGTGTGGATGAGAAACCAGAG
GCGCCAAGTGCATCTATATCATCAGCAACAAAAGATAAAGTTATCGCATT
GCGTTTGGAAAAATGGCCGATGAATATTAAGAAAGACTTTCTCGACAGAA
AAACAAACTTCAAGGAATTTTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006327-exon-sc0000066-1575043694:644471..644864 | TCONS_00006327-exon-sc0000066-1575043694:644471..644864 | Clytia hemisphaerica | exon |
| TCONS_00006327-exon-sc0000066-1575043694:643474..643999 | TCONS_00006327-exon-sc0000066-1575043694:643474..643999 | Clytia hemisphaerica | exon |
| TCONS_00006327-exon-sc0000066-1510915933:644471..644864 | TCONS_00006327-exon-sc0000066-1510915933:644471..644864 | Clytia hemisphaerica | exon |
| TCONS_00006327-exon-sc0000066-1510915933:643474..643999 | TCONS_00006327-exon-sc0000066-1510915933:643474..643999 | Clytia hemisphaerica | exon |
| TCONS_00006327-exon-sc0000066-1491911889:644471..644864 | TCONS_00006327-exon-sc0000066-1491911889:644471..644864 | Clytia hemisphaerica | exon |
| TCONS_00006327-exon-sc0000066-1491911889:643474..643999 | TCONS_00006327-exon-sc0000066-1491911889:643474..643999 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000066 | supercontig | sc0000066:643474..644864 - |
Blast
The following BLAST results are available for this feature:
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