TCONS_00006326 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006326
Unique NameTCONS_00006326
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length420

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006326 ID=TCONS_00006326|Name=TCONS_00006326|organism=Clytia hemisphaerica|type=transcript|length=420bp
aagaaatgATGGGGAAGTTGAGACAAAACTGGATAGTGACTGAACTGCTT
AATGATGCATGTTCTGATATTAAGTTGGGAATGGAACGAggagaaattct
tttgaatGAAGAGTTTGATGCTGTCAAGACTTTTCAATGTACAAAATGCA
ATGCATCTTTCTTTTGTAGTTATGAAGAAACATTAGAAGGTCCTGTTGAA
CTGTTTCGAAAGATGTATGAAGTCCATATGAAAAATCTTCATGAAATGGC
CGACAAGGGGGTTAAAGAACAGGATTTACGAACACAGGAAATGCAAGAAC
AACATCAATTAGAAGAACGCCAACATGAGGAAATCGAGAAATCACGAAAA
CGAAAATATGATGATGGCGATGAAGACTAAACTGTAAAAAGAGGACCAAT
AAACGTGGTCGATATTcctt
Run BLAST on NCBI

transcript from alignment at sc0000066:642178..643001-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006326 ID=TCONS_00006326|Name=TCONS_00006326|organism=Clytia hemisphaerica|type=transcript|length=824bp|location=Sequence derived from alignment at sc0000066:642178..643001- (Clytia hemisphaerica)
AAGAAATGATGGGGAAGTTGAGACAAAACTGGNTAATGCTAACTTGAAGT
TGATGTTTGTTGCAGAAATTTATAATGAATGTATGATACACCTGACGTCA
TTTCTATCACTGCTTTTCCATGAAGATAAAGATAACAATTTATCAAAGGA
TTATCTCTTCCTTCTAAAATCAGTTTATCAATTGGCAACCTTAAGATTTG
GTTTTTCTGAACTCAAGGAGACGAAAAACCAGCTGATTTGCAATTATTTG
GAAAATTTCATTGACACTTTGGCGGCCTTGCAGAATTTGCCTGGTGCATA
CATTGAAAGGGGGATTATGTCTCAAACTAAGCGTTGTTGGAATTTCCCAA
CCTTTAATTGGGGAAGAATGGTTAAAGAAGCGGTCAACGCTTCGAAATTA
AATAAAGAAATGATGGGGAAGTTGAGACAAAACAGGATAGTGACTGAACT
GCTTAATGATGCATGTTCTGATATTAAGTTGGGAATGGAACGAGGAGAAA
TTCTTTTGAATGAAGAGTTTGATGCTGTCAAGACTTTTCAATGTACAAAA
TGCAATGCATCTTTCTTTTGTAGTTATGAAGAAACATTAGAAGGTCCTGT
TGAACTGTTTCGAAAGATGTATGAAGTCCATATGAAAAATCTTCATGAAA
TGGCCGACAAGGGGGTTAAAGAACAGGATTTACGAACACAGGAAATGCAA
GAACAACATCAATTAGAAGAACGCCAACATGAGGAAATCGAGAAATCACG
AAAACGAAAATATGATGATGGCGATGAAGACTAAACTGTAAAAAGAGGAC
CAATAAACGTGGTCGATATTCCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003607XLOC_003607Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006326-exon-sc0000066-1575043694:642971..643001TCONS_00006326-exon-sc0000066-1575043694:642971..643001Clytia hemisphaericaexon
TCONS_00006326-exon-sc0000066-1575043694:642178..642566TCONS_00006326-exon-sc0000066-1575043694:642178..642566Clytia hemisphaericaexon
TCONS_00006326-exon-sc0000066-1510915933:642971..643001TCONS_00006326-exon-sc0000066-1510915933:642971..643001Clytia hemisphaericaexon
TCONS_00006326-exon-sc0000066-1510915933:642178..642566TCONS_00006326-exon-sc0000066-1510915933:642178..642566Clytia hemisphaericaexon
TCONS_00006326-exon-sc0000066-1491911889:642971..643001TCONS_00006326-exon-sc0000066-1491911889:642971..643001Clytia hemisphaericaexon
TCONS_00006326-exon-sc0000066-1491911889:642178..642566TCONS_00006326-exon-sc0000066-1491911889:642178..642566Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000066supercontigsc0000066:642178..643001 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.12381	2.74738	1.78948	0.914543	11.6684	12.1199	5.42542	4.09203	1.33017	7.2319	0.186697	1.61316	2.23238	2.29582	2.35616	2.36357	2.02331	2.3097	2.95922	5.12995	0.591553	0.286754	2.2574	3.49554	3.62405	3.75214	4.80257	4.72039	3.99011	3.53035
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006326 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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