TCONS_00006318 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006318
Unique NameTCONS_00006318
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2320

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006318 ID=TCONS_00006318|Name=TCONS_00006318|organism=Clytia hemisphaerica|type=transcript|length=2320bp
ttacgttacttatggacgccagagaatgccagggtattatctagcgctat
cagtaagcataaagctgataatacgcagggaacgaggttgagcTGTGCCC
TCCAGACTTttctatttacaaaatttttaatcaaatttcttGTTCTGTTC
TTGTTGTATTTATTCTACCTTCTATTTTGCAGTgacaaaagaaaacaata
aataaaaagaaaaataacaaatcaGATAACAACTTCTAAAACAATGTGTG
AAGCATACGATATCATCGAATGGAAATCATGTGCCACCTTATCCTCACGA
TCGACGACATCCTCCACAGATAACCAGAAAGAAACAAACTTCAATCTGGG
TGGCTACACATTGTCACGTGACGGTATATGTTCAACCAATGATATTGTTT
TCCCGAAACTCTTCAAAGATGAAGATGATCCGGACAGTGAACAATCCGGT
ATCATCTCAATGGCGGACATGGATTATTACGGAAGAGGACCGTATgatta
tttgaaagaaaaacctcCGGATGAATTCGAAGAGCAAAGTGTTTATCAGA
AAGTTTCGAGTTGGGTTTTATCGCagaggaaatattttttgaacaatGAA
CCTTTACCTATTGAAGACGATGAAATGGAAGTGATCGATCCTGTCGATTT
GTTTCACGAATCCATCTTAAATGAATACTTTCTTATTACAGAGGATGATT
GTGAGAGAAGAGCTGTCTTTCGAGAACTCAAATCGAATCATTACGAAATT
GAATCTATAGAAGCCGCAATGGAAACGTTCGANACTCAAATCGAATCATT
ACGAAATCGAATCTATAGAAGCCGCAATGGAAACGTTCGATTATAAGTTT
CTACGTCAGccgaaaaaaaacattgaaatggaATTAATGCCCTTGATACA
CTTCCATCATCAATATGTCGATACGAACACCAAACGAAAGCGGAAACGAA
AAACTTCGAGTTCCACGATATCAACAGTATCGACTAACTGGGAAATCGAG
AGAGAAGAAGAGACAATCGATTTTCTCGGTGTACCTCGATTACTCGAGAA
CTATGTGATATTTAATCGAGAAGGTCGCGCTATTATACCTGATGCAGAAA
CAGACTTATGGTTGTCGCCTTTGCAAGAGGATTTACGCTCAGAGGAATCT
ACTAAGGGTGTTGTGGAACATGAGGAAATTGAATTCCTTTCATCCTGGTT
TTCGGACGCCTACCATGATATCCATACTGATGAGAATCGGACACTGATAA
CTGATAAAGTCACTGTTATTTCTTCTGTTAGCCATTGTACTGGAGAGGAG
GTCTGGGTCGACGCGCCGGAGATTCCTCATTGGTtagaaggagaagaaga
agaggaATTAGAACTCTTTAATCAACCGAGTAGGCCTTTATACTATTACC
GAGATCGTATTAAAGGGTGTTACCGTATAATCGGTATTGAAGACGAAACG
GTTGTTTTGTTTTCTGGTAACGATGACGAcactattttttataatgaaga
tgatgatgattttcagATCACGAAAACATTTCCTGAACCACGTGTTACCA
GGAATATATTTCGCGAGTTCAGTGTTGAGCGGACGCGCCAGGTTGTACAG
AGACGTCGAAATCGGAGCAATTCTGCAGACCGGAAAAATGATTCAGGAAT
TGAAGATATTGATGATATGATAGGTGAGGAGGTCGCTCTCGCCTCGCTCT
CATTATCCGATAAAGAAGCAAAGGAGCTAGGCTATAAAACTTATCAAGTC
AGAAATAATGACTTGTCTTCCCGTGAACGGAGGATCCATTCTAGTGAAAC
TTTCTTAGACTGGATTTTGGTTGCTCTCTTTGGGTTTATCATCATGGTTT
TTGTGTTTGTGTTTTGTGTCAAGGACTTGGATAAAGCGACaaagaaattt
aatttaaaagcGATCAAGAAATTTTATCATGATATTGAAGGATTGTTTTA
CCGTTTGAAAACGAGAATCAATTTCTAGAGTTTATCTTTATATTTTGTGA
CAAGGTACTTAGAAAATTTCGAAAGAGATGTTGCCTTCTCTTACTGTTTT
TACAAACTCAACTTCTTAGCAGCTGATAATATCAAGCTAACCCTTTGATA
TGAAAAGTTTAAAATGATTTAACTTTTTAACATCTTTAGGGTAGAGTACG
TTATATCTTTCGTTTCAAGCGTAAAAACCCTACTATACTAAGGCCTAAAA
AAACCTAAAGCtgtatattgtgtagtctagcatgctagacgacttaactc
agtaaaaaataggaagtagaaaacttgtcaggagcatcaatatagtcgtc
tagaatattttgtgcacaac
Run BLAST on NCBI

protein sequence of TCONS_00006318-protein

>TCONS_00006318-protein ID=TCONS_00006318-protein|Name=TCONS_00006318-protein|organism=Clytia hemisphaerica|type=polypeptide|length=383bp
METFDYKFLRQPKKNIEMELMPLIHFHHQYVDTNTKRKRKRKTSSSTIST
VSTNWEIEREEETIDFLGVPRLLENYVIFNREGRAIIPDAETDLWLSPLQ
EDLRSEESTKGVVEHEEIEFLSSWFSDAYHDIHTDENRTLITDKVTVISS
VSHCTGEEVWVDAPEIPHWLEGEEEEELELFNQPSRPLYYYRDRIKGCYR
IIGIEDETVVLFSGNDDDTIFYNEDDDDFQITKTFPEPRVTRNIFREFSV
ERTRQVVQRRRNRSNSADRKNDSGIEDIDDMIGEEVALASLSLSDKEAKE
LGYKTYQVRNNDLSSRERRIHSSETFLDWILVALFGFIIMVFVFVFCVKD
LDKATKKFNLKAIKKFYHDIEGLFYRLKTRINF
Run BLAST on NCBI

transcript from alignment at sc0000066:617994..620630-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006318 ID=TCONS_00006318|Name=TCONS_00006318|organism=Clytia hemisphaerica|type=transcript|length=2637bp|location=Sequence derived from alignment at sc0000066:617994..620630- (Clytia hemisphaerica)
TTACGTTACTTATGGACGCCAGAGAATGCCAGGGTATTATCTAGCGCTAT
CAGTAAGCATAAAGCTGATAATACGCAGGGAACGAGGTTGAGCTGTGCCC
TCCAGACTTTTCTATTTACAAAATTTTTAATCAAATTTCTTGTTCTGTTC
TTGTTGTATTTATTCTACCTTCTATTTTGCAGTGACAAAAGAAAACAATA
AATAAAAAGAAAAATAACAAATCAGATAACAACTTCTAAAACAATGTGTG
AAGCATACGATATCATCGAATGGAAATCATGTGCCACCTTATCCTCACGA
TCGACGACATCCTCCACAGATAACCAGAAAGAAACAAACTTCAATCTGGG
TGGCTACACATTGTCACGTGACGGTATATGTTCAACCAATGATATTGTTT
TCCCGAAACTCTTCAAAGATGAAGATGATCCGGACAGTGAACAATCCGGT
ATCATCTCAATGGCGGACATGGATTATTACGGAAGAGGACCGTATGATTA
TTTGAAAGAAAAACCTCCGGATGAATTCGAAGAGCAAAGTGTTTATCAGA
AAGTTTCGAGTTGGGTTTTATCGCAGAGGAAATATTTTTTGAACAATGAA
CCTTTACCTATTGAAGACGATGAAATGGAAGTGATCGATCCTGTCGATTT
GTTTCACGAATCCATCTTAAATGAATACTTTCTTATTACAGGTAAAAAAC
GATTTTCAAACATAAAAGATTTTAATTTTTTGGACTTTCAGACAGATTTT
ACCTATGCCTTGTTGTCTTGTAGCTATTCAAAGTCTCGATCCGAATTTAG
AGAACCTAACATTAGCACTATTTGAAATGAGGACTAAAAAATATCATTTT
ATCTTTCATATAAGTCCATGCAATTTTTATCAATATCGTGTGTTTCCTTG
TAAGAATCGAATAGTTATCAAATTCTAGGGATTCTATGGTGTACATCTTG
CACCCAGGGGCTTTATAATCATTCCTTAACTTATTTTGATAAACTTTCAC
TTTTCTAGAGGATGATTGTGAGAGAAGAGCTGTCTTTCGAGAACTCAAAT
CGAATCATTACGAAATTGAATCTATAGAAGCCGCAATGGAAACGTTCGAN
ACTCAAATCGAATCATTACGAAATCGAATCTATAGAAGCCGCAATGGAAA
CGTTCGATTATAAGTTTCTACGTCAGCCGAAAAAAAACATTGAAATGGAA
TTAATGCCCTTGATACACTTCCATCATCAATATGTCGATACGAACACCAA
ACGAAAGCGGAAACGAAAAACTTCGAGTTCCACGATATCAACAGTATCGA
CTAACTGGGAAATCGAGAGAGAAGAAGAGACAATCGATTTTCTCGGTGTA
CCTCGATTACTCGAGAACTATGTGATATTTAATCGAGAAGGTCGCGCTAT
TATACCTGATGCAGAAACAGACTTATGGTTGTCGCCTTTGCAAGAGGATT
TACGCTCAGAGGAATCTACTAAGGGTGTTGTGGAACATGAGGAAATTGAA
TTCCTTTCATCCTGGTTTTCGGACGCCTACCATGATATCCATACTGATGA
GAATCGGACACTGATAACTGATAAAGTCACTGTTATTTCTTCTGTTAGCC
ATTGTACTGGAGAGGAGGTCTGGGTCGACGCGCCGGAGATTCCTCATTGG
TTAGAAGGAGAAGAAGAAGAGGAATTAGAACTCTTTAATCAACCGAGTAG
GCCTTTATACTATTACCGAGATCGTATTAAAGGGTGTTACCGTATAATCG
GTATTGAAGACGAAACGGTTGTTTTGTTTTCTGGTAACGATGACGACACT
ATTTTTTATAATGAAGATGATGATGATTTTCAGATCACGAAAACATTTCC
TGAACCACGTGTTACCAGGAATATATTTCGCGAGTTCAGTGTTGAGCGGA
CGCGCCAGGTTGTACAGAGACGTCGAAATCGGAGCAATTCTGCAGACCGG
AAAAATGATTCAGGAATTGAAGATATTGATGATATGATAGGTGAGGAGGT
CGCTCTCGCCTCGCTCTCATTATCCGATAAAGAAGCAAAGGAGCTAGGCT
ATAAAACTTATCAAGTCAGAAATAATGACTTGTCTTCCCGTGAACGGAGG
ATCCATTCTAGTGAAACTTTCTTAGACTGGATTTTGGTTGCTCTCTTTGG
GTTTATCATCATGGTTTTTGTGTTTGTGTTTTGTGTCAAGGACTTGGATA
AAGCGACAAAGAAATTTAATTTAAAAGCGATCAAGAAATTTTATCATGAT
ATTGAAGGATTGTTTTACCGTTTGAAAACGAGAATCAATTTCTAGAGTTT
ATCTTTATATTTTGTGACAAGGTACTTAGAAAATTTCGAAAGAGATGTTG
CCTTCTCTTACTGTTTTTACAAACTCAACTTCTTAGCAGCTGATAATATC
AAGCTAACCCTTTGATATGAAAAGTTTAAAATGATTTAACTTTTTAACAT
CTTTAGGGTAGAGTACGTTATATCTTTCGTTTCAAGCGTAAAAACCCTAC
TATACTAAGGCCTAAAAAAACCTAAAGCTGTATATTGTGTAGTCTAGCAT
GCTAGACGACTTAACTCAGTAAAAAATAGGAAGTAGAAAACTTGTCAGGA
GCATCAATATAGTCGTCTAGAATATTTTGTGCACAAC

Coding sequence (CDS) from alignment at sc0000066:617994..620630-

>TCONS_00006318 ID=TCONS_00006318|Name=TCONS_00006318|organism=Clytia hemisphaerica|type=CDS|length=1152bp|location=Sequence derived from alignment at sc0000066:617994..620630- (Clytia hemisphaerica)
ATGGAAACGTTCGATTATAAGTTTCTACGTCAGCCGAAAAAAAACATTGA
AATGGAATTAATGCCCTTGATACACTTCCATCATCAATATGTCGATACGA
ACACCAAACGAAAGCGGAAACGAAAAACTTCGAGTTCCACGATATCAACA
GTATCGACTAACTGGGAAATCGAGAGAGAAGAAGAGACAATCGATTTTCT
CGGTGTACCTCGATTACTCGAGAACTATGTGATATTTAATCGAGAAGGTC
GCGCTATTATACCTGATGCAGAAACAGACTTATGGTTGTCGCCTTTGCAA
GAGGATTTACGCTCAGAGGAATCTACTAAGGGTGTTGTGGAACATGAGGA
AATTGAATTCCTTTCATCCTGGTTTTCGGACGCCTACCATGATATCCATA
CTGATGAGAATCGGACACTGATAACTGATAAAGTCACTGTTATTTCTTCT
GTTAGCCATTGTACTGGAGAGGAGGTCTGGGTCGACGCGCCGGAGATTCC
TCATTGGTTAGAAGGAGAAGAAGAAGAGGAATTAGAACTCTTTAATCAAC
CGAGTAGGCCTTTATACTATTACCGAGATCGTATTAAAGGGTGTTACCGT
ATAATCGGTATTGAAGACGAAACGGTTGTTTTGTTTTCTGGTAACGATGA
CGACACTATTTTTTATAATGAAGATGATGATGATTTTCAGATCACGAAAA
CATTTCCTGAACCACGTGTTACCAGGAATATATTTCGCGAGTTCAGTGTT
GAGCGGACGCGCCAGGTTGTACAGAGACGTCGAAATCGGAGCAATTCTGC
AGACCGGAAAAATGATTCAGGAATTGAAGATATTGATGATATGATAGGTG
AGGAGGTCGCTCTCGCCTCGCTCTCATTATCCGATAAAGAAGCAAAGGAG
CTAGGCTATAAAACTTATCAAGTCAGAAATAATGACTTGTCTTCCCGTGA
ACGGAGGATCCATTCTAGTGAAACTTTCTTAGACTGGATTTTGGTTGCTC
TCTTTGGGTTTATCATCATGGTTTTTGTGTTTGTGTTTTGTGTCAAGGAC
TTGGATAAAGCGACAAAGAAATTTAATTTAAAAGCGATCAAGAAATTTTA
TCATGATATTGAAGGATTGTTTTACCGTTTGAAAACGAGAATCAATTTCT
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003604XLOC_003604Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006318-proteinTCONS_00006318-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006318-exon-sc0000066-1575043694:619940..620630TCONS_00006318-exon-sc0000066-1575043694:619940..620630Clytia hemisphaericaexon
TCONS_00006318-exon-sc0000066-1575043694:617994..619622TCONS_00006318-exon-sc0000066-1575043694:617994..619622Clytia hemisphaericaexon
TCONS_00006318-exon-sc0000066-1510915933:619940..620630TCONS_00006318-exon-sc0000066-1510915933:619940..620630Clytia hemisphaericaexon
TCONS_00006318-exon-sc0000066-1510915933:617994..619622TCONS_00006318-exon-sc0000066-1510915933:617994..619622Clytia hemisphaericaexon
TCONS_00006318-exon-sc0000066-1491911889:619940..620630TCONS_00006318-exon-sc0000066-1491911889:619940..620630Clytia hemisphaericaexon
TCONS_00006318-exon-sc0000066-1491911889:617994..619622TCONS_00006318-exon-sc0000066-1491911889:617994..619622Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000066supercontigsc0000066:617994..620630 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.72064	2.79866	2.40854	2.59997	25.9531	18.5327	15.5115	15.2209	6.44784	17.1657	12.3979	13.3757	17.0926	15.2318	18.6356	9.26542	6.65384	18.7842	10.0105	10.9436	5.1369	5.20852	11.4463	11.6537	7.36901	10.0865	38.9134	45.3662	9.39408	7.93723
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006318 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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