|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006314 ID=TCONS_00006314|Name=TCONS_00006314|organism=Clytia hemisphaerica|type=transcript|length=8354bp transcript from alignment at sc0000066:573135..604188- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006314 ID=TCONS_00006314|Name=TCONS_00006314|organism=Clytia hemisphaerica|type=transcript|length=31054bp|location=Sequence derived from alignment at sc0000066:573135..604188- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00006314 vs. Swiss-Prot (Human)
Match: ABCA2 (ATP-binding cassette sub-family A member 2 OS=Homo sapiens GN=ABCA2 PE=1 SV=3) HSP 1 Score: 903.664 bits (2334), Expect = 0.000e+0 Identity = 463/997 (46.44%), Postives = 633/997 (63.49%), Query Frame = 3
Query: 4971 IQTIGSESWSYHVGTSSKINRNIERWQQFYALILKRFHHTKRNIKSLLTHIFLPGIFISIAMTVALSQPKANTYPKLVLSPTMFH---PP-----PY----HXXXXXXXXXXXXXRKMEESLYLPSGISADCVLKNP-NSTLREDFTYRYLRENL--KELFDPFCYQQVGR----------------------------KFNMELPEPIS--------KLEQNFNISLTCNCT-KNYQYKCDDGIEGNPETFNTATRDTLHNIENRDFWTYLLQTSNSFKRRRYGALTFGDEQDVVPESVTQSKFSDIQKLYAKETARVWFNNKGFHAMPTFINAMDNALLRAMLPPEKGNPAAYGITAASHPLNITHNVLDINAIRQGTDAVIAIFVIIAMSFVPASFVVFLVMERTTKAKHIQFVSGLSPVLYWLSNYIWDFVSLSDILIF*YDRTLPXFTNFVWDFFNYLIPAMPCILIFYLFDVPAYASSTNLPAVCALFVCYGWSITPMMYPASFLFREASTAFVVLILLNLFLGITCTITVSILQLFSSDPSLKIAYEIATQVCLIFPTYCLGRGLMDLAYTELLNQLYMEIGSFDKIRSPFEWELVTRSLVYMVTEGFIFFIITLLIEH-FSTRSKRTVLIMDSASQNEDIDVSNERERVLSGGADDDVMRIENLTKIYNSRKTGKHLAVDRLCVGITRGECFGLLGVNGAGKTTTFKMLTGDIRPTAGDAYVENKSISHNPLSVHQKIGYCPQFDALFDHLTAEEHLYFYARLKGIPEHEIARIANWLIKKMALTRYANKPSKTYSGGNKRKLSAAIALLGNPSVIFMDEPTTGMDPGARRFLWNVILSIVKEGTKSVVLTSHSMEECEALCTRLAIMVNGKFKCLGSTQHLKDRFGDGYIVVIRIKGSLPNMEPIKNFMEETFENCIMKECHNNLVQYQIPSSSECNLSQIFSTMEEITERFDIEDYSVRQTSLDNVFVNFARNQRES--QQANDNPS 7796
+Q + +E+ S S K++ + +QF+ L++KRFH +RN K+L + I LP F+ +AMTVALS P+ P LVLSP+ +H P PY + +++ + LPSG+ A CVLK+P N +L L FD C + + +N+ LP L + + C C+ + + C + G+P T D L +I + YLL TS+ F+ RYGA+TFG+ +P S ++K+ + A+V++NNKG+H+MPT++N+++NA+LRA LP KGNPAAYGIT +HP+N T L ++ + QGTD VIAIF+I+AMSFVPASFVVFLV E++TKAKH+QFVSG +P++YWL+NY VWD NYL+PA C++I ++FD+PAY S TN PAV +LF+ YGWSITP+MYPASF F S+A+V LI++NLF+GIT T+ +LQLF D LK+ LIFP Y LG GLM++AY E +N+ Y +IG FDK++SPFEW++VTR LV M EG + F++T++ ++ F R +R + + + +D+DV++ER+RVL G AD+D+++IENLTK+Y SRK G+ LAVDRLC+G+ GECFGLLGVNGAGKT+TFKMLTGD T G+A+V S+ L V Q +GYCPQ DALFD LTA EHL Y RL+GI + AR+ W ++K+ LT+YA+KP+ TYSGGNKRKLS AIAL+G P+ IF+DEPTTGMDP ARRFLWN+IL ++K G +SVVLTSHSMEECEALCTRLAIMVNG+ +CLGS QHLK+RFGDGY++ +R K S +++ + F F ++KE H+ VQYQ+ S +L+Q+FS ME+++ IEDYSV QT+LDNVFVNFA+ Q ++ QQ + PS
Sbjct: 1411 LQEVEAEALSRVGQGSRKLDGGWLKVRQFHGLLVKRFHCARRNSKALFSQILLPAFFVCVAMTVALSVPEIGDLPPLVLSPSQYHNYTQPRGNFIPYANEERREYRLRLSPDASPQQLVSTFRLPSGVGATCVLKSPANGSLGPTLNLSSGESRLLAARFFDSMCLESFTQGLPLSNFVPPPPSPAPSDSPASPDEDLQAWNVSLPPTAGPEMWTSAPSLPRLVREPVRCTCSAQGTGFSCPSSVGGHPPQMRVVTGDILTDITGHNVSEYLLFTSDRFRLHRYGAITFGNVLKSIPASFGTRAPPMVRKIAVRRAAQVFYNNKGYHSMPTYLNSLNNAILRANLPKSKGNPAAYGITVTNHPMNKTSASLSLDYLLQGTDVVIAIFIIVAMSFVPASFVVFLVAEKSTKAKHLQFVSGCNPIIYWLANY-------------------------VWDMLNYLVPATCCVIILFVFDLPAYTSPTNFPAVLSLFLLYGWSITPIMYPASFWFEVPSSAYVFLIVINLFIGITATVATFLLQLFEHDKDLKVVNSYLKSCFLIFPNYNLGHGLMEMAYNEYINEYYAKIGQFDKMKSPFEWDIVTRGLVAMAVEGVVGFLLTIMCQYNFLRRPQR--MPVSTKPVEDDVDVASERQRVLRGDADNDMVKIENLTKVYKSRKIGRILAVDRLCLGVRPGECFGLLGVNGAGKTSTFKMLTGDESTTGGEAFVNGHSVLKELLQVQQSLGYCPQCDALFDELTAREHLQLYTRLRGISWKDEARVVKWALEKLELTKYADKPAGTYSGGNKRKLSTAIALIGYPAFIFLDEPTTGMDPKARRFLWNLILDLIKTG-RSVVLTSHSMEECEALCTRLAIMVNGRLRCLGSIQHLKNRFGDGYMITVRTKSS-QSVKDVVRFFNRNFPEAMLKERHHTKVQYQL-KSEHISLAQVFSKMEQVSGVLGIEDYSVSQTTLDNVFVNFAKKQSDNLEQQETEPPS 2377 HSP 2 Score: 771.541 bits (1991), Expect = 0.000e+0 Identity = 378/713 (53.02%), Postives = 497/713 (69.71%), Query Frame = 2
Query: 2168 IQLLTELDKIDYMAEGWQAVLKPMKLDLFYGFPNETMLNRYIQNRTRSNSGKTQFLSAVLFDNIEKNGRLPKHLHYRIRMDSRIMFPTANIREPFWRPGPLAGNSKYYYFGFAWMQDSLERAMIELMTGRNVSQPGLYIQEIPYPCYLGDNFLFMIQYIMPLCVVISFIYSVAILVQSIVYEKEQRLKEVMKMMGLSNTVSFIYSVAILVQSIVYEKEQRLKEVMKMMGLSNTVHWAAWFITSIVGMXXXXXXXXXXXKTGHILPNSNSYIIFVFLTLAAIATIMFCFLISIFFSKAKLAAACGGIIYFVTYMPYIFISIQEGGSNHIDVSSNFKTVASLFSTTAFGLGARYFALFEQNGVGLQWSNLSMSPLEGDDFNMRKVFTMLLADTFIYAILVWYIESIHPGTYGIPRPWYFPFQLSYWFGPQASLDCEMD-CFKKSYKMAGNSEQNTAAL--------LAVETEPTHLKLGVAIKNLLKIYKKGSQPAIDHLSLNLYENQITSFLGHNGAGKTTTMSLLTGLFPSTSGTAYIYGKDIHTDMDSVRKSLGLCPQHNILYDRLTVEESLWFYARLKGMSDKKQVKYEIEKVLDDVGLSEKSNSFVDTLSGGMKRKLSVAIAFVGGSRTVILDEPTAGVDPYARRAIWELLEKYKDGRTILLSTHFMDEADILGDRIAIISHGKLRCVGSSLFLKTKFGDGYHLTLDKEP 4279
+ LL +LD ID A GW + + +D+F GF +E + Y N+ ++ ++V+F K+G LP H+HY+IR +S T IR +WRPGP G Y+ +GF W+QD +ERA+I+ G +V +PG Y+Q PYPCY D+FLF+I+++MPLC+VI S++YSVA+ +Q IV EKE RLKEVMK MGL+N VHW AWFIT V + V LT +LK G +L +S+ II++FL + A+ATIMFCFL+S+ +SKAKLA+ACGGIIYF++Y+PY++++I+E + H +++ K +ASL STTAFGLG++YFAL+E GVG+QW S SP+EGDDFN+ TML+ D +Y IL WYIE++HPG YG+PRPWYFP Q SYW G + E + ++ +++ E A+ +E EPTHL L V + L K+YK + A++ LSLNLYENQ+ SFLGHNGAGKTTTMS+LTGLFP TSG+A IYG DI T+MD +RK+LG+CPQHN+L+DRLTVEE LWFY+RLK M+ +++++ E++K+++D+ LS K +S V TLSGGMKRKLSVAIAFVGGSR +ILDEPTAGVDPYARRAIW+L+ KYK GRTILLSTH MDEAD+LGDRIAIISHGKL+C GS LFLK +GDGY LTL K P
Sbjct: 551 MALLQQLDTIDNAACGWIQFMSKVSVDIFKGFHDEESIVNYTLNQAYQDN--VTVFASVIFQT-RKDGSLPPHVHYKIRQNSSFTEKTNEIRRAYWRPGPNTGGRFYFLYGFVWIQDMMERAIIDTFVGHDVVEPGSYVQMFPYPCYTRDDFLFVIEHMMPLCMVI----------------------------------SWVYSVAMTIQHIVAEKEHRLKEVMKTMGLNNAVHWVAWFITGFVQLSISVTALTAILKYGQVLMHSHVVIIWLFLAVYAVATIMFCFLVSVLYSKAKLASACGGIIYFLSYVPYMYVAIREEVA-HDKITAFEKCIASLMSTTAFGLGSKYFALYEVAGVGIQWHTFSQSPVEGDDFNLLLAVTMLMVDAVVYGILTWYIEAVHPGMYGLPRPWYFPLQKSYWLGSGRTEAWEWSWPWARTPRLSVMEEDQACAMESRRFEETRGMEEEPTHLPLVVCVDKLTKVYKDDKKLALNKLSLNLYENQVVSFLGHNGAGKTTTMSILTGLFPPTSGSATIYGHDIRTEMDEIRKNLGMCPQHNVLFDRLTVEEHLWFYSRLKSMA-QEEIRREMDKMIEDLELSNKRHSLVQTLSGGMKRKLSVAIAFVGGSRAIILDEPTAGVDPYARRAIWDLILKYKPGRTILLSTHHMDEADLLGDRIAIISHGKLKCCGSPLFLKGTYGDGYRLTLVKRP 1224 HSP 3 Score: 204.912 bits (520), Expect = 3.284e-52 Identity = 119/359 (33.15%), Postives = 195/359 (54.32%), Query Frame = 3
Query: 6807 VMRIENLTKIYNSRKTGKHLAVDRLCVGITRGECFGLLGVNGAGKTTTFKMLTGDIRPTAGDAYVENKSISHNPLSVHQKIGYCPQFDALFDHLTAEEHLYFYARLKGIPEHEIARIANWLIKKMALTRYANKPSKTYSGGNKRKLSAAIALLGNPSVIFMDEPTTGMDPGARRFLWNVILSIVKEGTKSVVLTSHSMEECEALCTRLAIMVNGKFKCLGSTQHLKDRFGDGYIVVI-------------RIKGSLPNMEP--------IKNFMEETFENCIMKECHNNLVQYQIPS--SSECNLSQIFSTMEEITERFDIEDYSVRQTSLDNVFVNFARNQRESQQANDNPSNNKENR 7814
V+ ++ LTK+Y K K LA+++L + + + LG NGAGKTTT +LTG PT+G A + I + + +G CPQ + LFD LT EEHL+FY+RLK + + EI R + +I+ + L+ + +T SGG KRKLS AIA +G I +DEPT G+DP ARR +W++IL K G ++++L++H M+E + L R+AI+ +GK KC GS LK +GDGY + + + S P P + F+ + +C++ + + Y +PS + + ++F +E + + + + T+L+ VF+ + E Q ++ ++ KE+R
Sbjct: 989 VVCVDKLTKVY---KDDKKLALNKLSLNLYENQVVSFLGHNGAGKTTTMSILTGLFPPTSGSATIYGHDIRTEMDEIRKNLGMCPQHNVLFDRLTVEEHLWFYSRLKSMAQEEIRREMDKMIEDLELSNKRHSLVQTLSGGMKRKLSVAIAFVGGSRAIILDEPTAGVDPYARRAIWDLILK-YKPG-RTILLSTHHMDEADLLGDRIAIISHGKLKCCGSPLFLKGTYGDGYRLTLVKRPAEPGGPQEPGLASSPPGRAPLSSCSELQVSQFIRKHVASCLLVSDTSTELSYILPSEAAKKGAFERLFQHLERSLDALHLSSFGLMDTTLEEVFLKVS---EEDQSLENSEADVKESR 1339 HSP 4 Score: 191.43 bits (485), Expect = 3.706e-48 Identity = 101/236 (42.80%), Postives = 150/236 (63.56%), Query Frame = 2
Query: 3572 VAIKNLLKIYKK---GSQPAIDHLSLNLYENQITSFLGHNGAGKTTTMSLLTGLFPSTSGTAYIYGKDIHTDMDSVRKSLGLCPQHNILYDRLTVEESLWFYARLKGMSDKKQVKYEIEKVLDDVGLSEKSNSFVDTLSGGMKRKLSVAIAFVGGSRTVILDEPTAGVDPYARRAIWEL-LEKYKDGRTILLSTHFMDEADILGDRIAIISHGKLRCVGSSLFLKTKFGDGYHLTL 4267
V I+NL K+YK G A+D L L + + LG NGAGKT+T +LTG +T G A++ G + ++ V++SLG CPQ + L+D LT E L Y RL+G+S K + + ++ L+ + L++ ++ T SGG KRKLS AIA +G + LDEPT G+DP ARR +W L L+ K GR+++L++H M+E + L R+AI+ +G+LRC+GS LK +FGDGY +T+
Sbjct: 2050 VKIENLTKVYKSRKIGRILAVDRLCLGVRPGECFGLLGVNGAGKTSTFKMLTGDESTTGGEAFVNGHSVLKELLQVQQSLGYCPQCDALFDELTAREHLQLYTRLRGISWKDEARV-VKWALEKLELTKYADKPAGTYSGGNKRKLSTAIALIGYPAFIFLDEPTTGMDPKARRFLWNLILDLIKTGRSVVLTSHSMEECEALCTRLAIMVNGRLRCLGSIQHLKNRFGDGYMITV 2284 The following BLAST results are available for this feature:
BLAST of TCONS_00006314 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.