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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006310 ID=TCONS_00006310|Name=TCONS_00006310|organism=Clytia hemisphaerica|type=transcript|length=1698bpRun BLAST on NCBI transcript from alignment at sc0000066:573135..577608- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006310 ID=TCONS_00006310|Name=TCONS_00006310|organism=Clytia hemisphaerica|type=transcript|length=4474bp|location=Sequence derived from alignment at sc0000066:573135..577608- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00006310 vs. Swiss-Prot (Human)
Match: ABCA2 (ATP-binding cassette sub-family A member 2 OS=Homo sapiens GN=ABCA2 PE=1 SV=3) HSP 1 Score: 325.479 bits (833), Expect = 1.178e-121 Identity = 157/276 (56.88%), Postives = 203/276 (73.55%), Query Frame = 1
Query: 319 AT*NXDAYVENKSISHNPLSVHQKIGYCPQFDALFDHLTAEEHLYFYARLKGIPEHEIARIANWLIKKMALTRYANKPSKTYSGGNKRKLSAAIALLGNPSVIFMDEPTTGMDPGARRFLWNVILSIVKEGTKSVVLTSHSMEECEALCTRLAIMVNGKFKCLGSTQHLKDRFGDGYIVVIRIKGSLPNMEPIKNFMEETFENCIMKECHNNLVQYQIPSSSECNLSQIFSTMEEITERFDIEDYSVRQTSLDNVFVNFARNQRES--QQANDNPS 1140
+T +A+V S+ L V Q +GYCPQ DALFD LTA EHL Y RL+GI + AR+ W ++K+ LT+YA+KP+ TYSGGNKRKLS AIAL+G P+ IF+DEPTTGMDP ARRFLWN+IL ++K G +SVVLTSHSMEECEALCTRLAIMVNG+ +CLGS QHLK+RFGDGY++ +R K S +++ + F F ++KE H+ VQYQ+ S +L+Q+FS ME+++ IEDYSV QT+LDNVFVNFA+ Q ++ QQ + PS
Sbjct: 2105 STTGGEAFVNGHSVLKELLQVQQSLGYCPQCDALFDELTAREHLQLYTRLRGISWKDEARVVKWALEKLELTKYADKPAGTYSGGNKRKLSTAIALIGYPAFIFLDEPTTGMDPKARRFLWNLILDLIKTG-RSVVLTSHSMEECEALCTRLAIMVNGRLRCLGSIQHLKNRFGDGYMITVRTKSS-QSVKDVVRFFNRNFPEAMLKERHHTKVQYQL-KSEHISLAQVFSKMEQVSGVLGIEDYSVSQTTLDNVFVNFAKKQSDNLEQQETEPPS 2377 HSP 2 Score: 131.339 bits (329), Expect = 1.178e-121 Identity = 58/85 (68.24%), Postives = 74/85 (87.06%), Query Frame = 3
Query: 30 EDIDVSNERERVLSGGADDDVMRIENLTKIYNSRKTGKHLAVDRLCVGITRGECFGLLGVNGAGKTTTFKMLTGDIRPTAGDAYV 284
+D+DV++ER+RVL G AD+D+++IENLTK+Y SRK G+ LAVDRLC+G+ GECFGLLGVNGAGKT+TFKMLTGD T G+A+V
Sbjct: 2029 DDVDVASERQRVLRGDADNDMVKIENLTKVYKSRKIGRILAVDRLCLGVRPGECFGLLGVNGAGKTSTFKMLTGDESTTGGEAFV 2113 HSP 3 Score: 160.229 bits (404), Expect = 1.955e-48 Identity = 91/283 (32.16%), Postives = 154/283 (54.42%), Query Frame = 1
Query: 379 VHQKIGYCPQFDALFDHLTAEEHLYFYARLKGIPEHEIARIANWLIKKMALTRYANKPSKTYSGGNKRKLSAAIALLGNPSVIFMDEPTTGMDPGARRFLWNVILSIVKEGTKSVVLTSHSMEECEALCTRLAIMVNGKFKCLGSTQHLKDRFGDGYIVVI-------------RIKGSLPNMEP--------IKNFMEETFENCIMKECHNNLVQYQIPS--SSECNLSQIFSTMEEITERFDIEDYSVRQTSLDNVFVNFARNQRESQQANDNPSNNKENR 1158
+ + +G CPQ + LFD LT EEHL+FY+RLK + + EI R + +I+ + L+ + +T SGG KRKLS AIA +G I +DEPT G+DP ARR +W++IL K G ++++L++H M+E + L R+AI+ +GK KC GS LK +GDGY + + + S P P + F+ + +C++ + + Y +PS + + ++F +E + + + + T+L+ VF+ + E Q ++ ++ KE+R
Sbjct: 1062 IRKNLGMCPQHNVLFDRLTVEEHLWFYSRLKSMAQEEIRREMDKMIEDLELSNKRHSLVQTLSGGMKRKLSVAIAFVGGSRAIILDEPTAGVDPYARRAIWDLILK-YKPG-RTILLSTHHMDEADLLGDRIAIISHGKLKCCGSPLFLKGTYGDGYRLTLVKRPAEPGGPQEPGLASSPPGRAPLSSCSELQVSQFIRKHVASCLLVSDTSTELSYILPSEAAKKGAFERLFQHLERSLDALHLSSFGLMDTTLEEVFLKVS---EEDQSLENSEADVKESR 1339 HSP 4 Score: 51.9878 bits (123), Expect = 1.955e-48 Identity = 27/65 (41.54%), Postives = 40/65 (61.54%), Query Frame = 3
Query: 90 VMRIENLTKIYNSRKTGKHLAVDRLCVGITRGECFGLLGVNGAGKTTTFKMLTGDIRPTAGDAYV 284
V+ ++ LTK+Y K K LA+++L + + + LG NGAGKTTT +LTG PT+G A +
Sbjct: 989 VVCVDKLTKVY---KDDKKLALNKLSLNLYENQVVSFLGHNGAGKTTTMSILTGLFPPTSGSATI 1050 The following BLAST results are available for this feature:
BLAST of TCONS_00006310 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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