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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006308 ID=TCONS_00006308|Name=TCONS_00006308|organism=Clytia hemisphaerica|type=transcript|length=2220bpRun BLAST on NCBI protein sequence of TCONS_00006308-protein >TCONS_00006308-protein ID=TCONS_00006308-protein|Name=TCONS_00006308-protein|organism=Clytia hemisphaerica|type=polypeptide|length=607bp MATSSDASQATFQKKISILYGSQTGTAEDVAERIGRESRRRHLETTVSSLRun BLAST on NCBI transcript from alignment at sc0000066:490026..522154- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006308 ID=TCONS_00006308|Name=TCONS_00006308|organism=Clytia hemisphaerica|type=transcript|length=32129bp|location=Sequence derived from alignment at sc0000066:490026..522154- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000066:490026..522154- >TCONS_00006308 ID=TCONS_00006308|Name=TCONS_00006308|organism=Clytia hemisphaerica|type=CDS|length=29184bp|location=Sequence derived from alignment at sc0000066:490026..522154- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00006308 vs. Swiss-Prot (Human)
Match: NDOR1 (NADPH-dependent diflavin oxidoreductase 1 OS=Homo sapiens GN=NDOR1 PE=1 SV=1) HSP 1 Score: 536.569 bits (1381), Expect = 0.000e+0 Identity = 275/596 (46.14%), Postives = 380/596 (63.76%), Query Frame = 3
Query: 132 KISILYGSQTGTAEDVAERIGRESRRRHLETTVSSLDDYTIANLIQENVVVFVASTTGQGDPPDNMKKFWRFILRKDLPGSSLNGINFAVLGLGDSSYLKFNFIAKKLCKRLLQLGGNQILNSGLADEQHPLGLDATIDPWLVSLWDIVLSFYPLEPNQKIIPQKQLLAAKFKVEVVDENIIVADNINDVKLNSKGDAVNEHNPWTCHINSNVKKTVENHFQDVRLLSFDLTGSDLKYVPGDVLMIKPKNRKEVLEEFFTLVKWNPQTKVKISQNWPDTPILRGLTSVITLHDLFKNYLSIQGVPKRYFFELLSHFTNSELEEERLLEFCSAEGQEDLYEYCYKPKRNYLEVLQDFPHACSNLKLEYVFDLFPPMKPRAFSIASSQKVDSNVAQILMAVVNYKTSMFLPRQGLCSTWLASL-PKASEESMQCWINKGTIVFPKDNTVPVIMVGPGTGVAPFRSFMQERLQSNAKGET--VLFFGCRNKTGDDFFRDEWNALGEDSPVKIFTCYSRDQPQKIYVQHLLKQQGEFIWNLISQKNAYFFIAGNSKDMPNDVINGLKEIFQSAGSMKEEESEQYFKEMEMKSRFQCETWS 1910
++ +L+GSQTGTA+DV+ER+GRE+RRR L V +LD Y + NLI E +V+FV +TTGQGDPPDNMK FWRFI RK+LP ++L ++FAVLGLGDSSY KFNF+AKKL +RLLQLGG+ +L L D+QH LG DA +DPWL LWD VL YP P IP L +KF + + E V + +E P+ + SN + T +HFQDVRL+ FD+ GS + + GDV++I+P N ++ F ++ +P + PD L ++ L +YL I VP+R FFELL+ + ELE E+LLEF SA+GQE+L+EYC +P+R LEVL DFPH + + +Y+ DL P ++PRAFSIASS + QIL+AVV ++T + PR+GLCS+WLASL P + W+ G++ FP+ PVIMVGPGTGVAPFR+ +QER+ A+G+T LFFGCR + D ++ EW L + + + +SR+Q QK+YVQH L++ G +W L+ ++ AYF++AGN+K MP DV L IFQ G + ++ Y ++ RFQ ETW+
Sbjct: 5 QLLVLFGSQTGTAQDVSERLGREARRRRLGCRVQALDSYPVVNLINEPLVIFVCATTGQGDPPDNMKNFWRFIFRKNLPSTALCQMDFAVLGLGDSSYAKFNFVAKKLHRRLLQLGGSALLPVCLGDDQHELGPDAAVDPWLRDLWDRVLGLYPPPPGLTEIPPGVPLPSKFTLLFLQEAPSTGSEGQRVAHPGSQEPPSESKPFLAPMISNQRVTGPSHFQDVRLIEFDILGSGISFAAGDVVLIQPSNSAAHVQRFCQVLGLDPDQLFMLQPREPDVSSPTRLPQPCSMRHLVSHYLDIASVPRRSFFELLACLSLHELEREKLLEFSSAQGQEELFEYCNRPRRTILEVLCDFPHTAAAIPPDYLLDLIPVIRPRAFSIASSLLTHPSRLQILVAVVQFQTRLKEPRRGLCSSWLASLDPGQGPVRVPLWVRPGSLAFPETPDTPVIMVGPGTGVAPFRAAIQERV---AQGQTGNFLFFGCRWRDQDFYWEAEWQELEKRDCLTLIPAFSREQEQKVYVQHRLRELGSLVWELLDRQGAYFYLAGNAKSMPADVSEALMSIFQEEGGLCSPDAAAYLARLQQTRRFQTETWA 597 The following BLAST results are available for this feature:
BLAST of TCONS_00006308 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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