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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006307 ID=TCONS_00006307|Name=TCONS_00006307|organism=Clytia hemisphaerica|type=transcript|length=922bp
ATTTTATTCAGCTGGTGAGGAGGCTTGCACAATCCCTGTCTTGAGCGTGG
ACCATGCATTTGGCGAAAAAGTTACCGGTCAATATTTCAACTTCAATAGA
GAACACATGTCTTGTTTGACACCTGGTAAACAAATCCAATTCTTAGCTTA
CAATCCTCGAACTTCCACCATCGGTGAAGTGGTGGTATGGGGCGGTAGGA
ATGGCGGTTCTGTGGGTGACTCTCATGGAAGATTCAATTATCTGAATGTA
AGGCCTGCACCAGGACAATGGCAAAGAGGAGATACAGTGGTACCAATTGA
CTGTTCCCATGAAAATACAGTAAAACGATGCAGTATTCCGATCGTGAGCG
TTGATCACAAATCCGGTAAAACTGGACAATATTTCAATTTCGATCGAAAA
TACATCAAAGAACTCTCAAACAACGGAAACTTGACGTTTCAAGCATACAA
CCTCCGCACAGGACAGATCGGAGAAGTCATTGTTTGGGGTTCGGCCAATG
GTGGAACCACTGGAGATTCTCATGGCAGATTCAACAGTAACAAAGTCGCT
CCTATGCCTGGTCAGTGGCGAAAAGGTGATCGTCTTTACCCTGTCGACCA
AGCTCTGTGtttgtaaatcaaaatttctctctaaactattttcataagaa
taaaaaaagaaacaattctgaaatttgatgaaatatttCCTCAACATAAA
TTTTTTCTACTTACttttaaaaacaccaaaagTGGGTAGATAAGCAAAGG
GAAGTGATTGATATTGTCGTTTCGCTGGATTCGTTTGAGCAGGGTTGTTT
TGGTAACTGTTACTATAGAGACTAGGTACTGGATACATTGCCGCCTGGAT
GAACTGCCTCTGATAAagatctaaaaattttgaaaaaagaaatagtgAGT
GGATGCTTGACTCCGTgataaa Run BLAST on NCBI protein sequence of TCONS_00006307-protein >TCONS_00006307-protein ID=TCONS_00006307-protein|Name=TCONS_00006307-protein|organism=Clytia hemisphaerica|type=polypeptide|length=204bp
FYSAGEEACTIPVLSVDHAFGEKVTGQYFNFNREHMSCLTPGKQIQFLAY
NPRTSTIGEVVVWGGRNGGSVGDSHGRFNYLNVRPAPGQWQRGDTVVPID
CSHENTVKRCSIPIVSVDHKSGKTGQYFNFDRKYIKELSNNGNLTFQAYN
LRTGQIGEVIVWGSANGGTTGDSHGRFNSNKVAPMPGQWRKGDRLYPVDQ
ALCL Run BLAST on NCBI transcript from alignment at sc0000066:481589..482659- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006307 ID=TCONS_00006307|Name=TCONS_00006307|organism=Clytia hemisphaerica|type=transcript|length=1071bp|location=Sequence derived from alignment at sc0000066:481589..482659- (Clytia hemisphaerica)
ATTTTATTCAGCTGGTGAGGAGGCTTGCACAATCCCTGTCTTGAGCGTGG
ACCATGCATTTGGCGAAAAAGTTACCGGTCAATATTTCAACTTCAATAGA
GAACACATGTCTTGTTTGACACCTGGTAAACAAATCCAATTCTTAGCTTA
CAATCCTCGAACTTCCACCATCGGTGAAGTGGTGGTATGGGGCGGTAGGA
ATGGCGGTTCTGTGGGTGACTCTCATGGAAGATTCAATTATCTGAATGTA
AGGCCTGCACCAGGACAATGGCAAAGAGGAGATACAGTGGTACCAATTGA
CTGTTCCCATGAAAATACAGGTAGAATTCGATTTCATATTTTCATCATGA
GAAACCATAAAACAAGAAATTCCTTTTTTCAGATACTTCTACATTTTAAA
ACATTTTCGAACTTTCAACCATTAATCATCAGCCTTTAAATATCATTAAT
AACCGCTATCCACTTTCAGTAAAACGATGCAGTATTCCGATCGTGAGCGT
TGATCACAAATCCGGTAAAACTGGACAATATTTCAATTTCGATCGAAAAT
ACATCAAAGAACTCTCAAACAACGGAAACTTGACGTTTCAAGCATACAAC
CTCCGCACAGGACAGATCGGAGAAGTCATTGTTTGGGGTTCGGCCAATGG
TGGAACCACTGGAGATTCTCATGGCAGATTCAACAGTAACAAAGTCGCTC
CTATGCCTGGTCAGTGGCGAAAAGGTGATCGTCTTTACCCTGTCGACCAA
GCTCTGTGTTTGTAAATCAAAATTTCTCTCTAAACTATTTTCATAAGAAT
AAAAAAAGAAACAATTCTGAAATTTGATGAAATATTTCCTCAACATAAAT
TTTTTCTACTTACTTTTAAAAACACCAAAAGTGGGTAGATAAGCAAAGGG
AAGTGATTGATATTGTCGTTTCGCTGGATTCGTTTGAGCAGGGTTGTTTT
GGTAACTGTTACTATAGAGACTAGGTACTGGATACATTGCCGCCTGGATG
AACTGCCTCTGATAAAGATCTAAAAATTTTGAAAAAAGAAATAGTGAGTG
GATGCTTGACTCCGTGATAAA Coding sequence (CDS) from alignment at sc0000066:481589..482659- >TCONS_00006307 ID=TCONS_00006307|Name=TCONS_00006307|organism=Clytia hemisphaerica|type=CDS|length=1230bp|location=Sequence derived from alignment at sc0000066:481589..482659- (Clytia hemisphaerica)
TAAAACGATGCAGTATTCCGATCGTGAGCGTTGATCACAAATCCGGTAAA
ACTGGACAATATTTCAATTTCGATCGAAAATACATCAAAGAACTCTCAAA
CAACGGAAACTTGACGTTTCAAGCATACAACCTCCGCACAGGACAGATCG
GAGAAGTCATTGTTTGGGGTTCGGCCAATGGTGGAACCACTGGAGATTCT
CATGGCAGATTCAACAGTAACAAAGTCGCTCCTATGCCTGGTCAGTGGCG
AAAAGGTGATCGTCTTTACCCTGTCGACCAAGCTCTGTGTTTGTAATTTT
ATTCAGCTGGTGAGGAGGCTTGCACAATCCCTGTCTTGAGCGTGGACCAT
GCATTTGGCGAAAAAGTTACCGGTCAATATTTCAACTTCAATAGAGAACA
CATGTCTTGTTTGACACCTGGTAAACAAATCCAATTCTTAGCTTACAATC
CTCGAACTTCCACCATCGGTGAAGTGGTGGTATGGGGCGGTAGGAATGGC
GGTTCTGTGGGTGACTCTCATGGAAGATTCAATTATCTGAATGTAAGGCC
TGCACCAGGACAATGGCAAAGAGGAGATACAGTGGTACCAATTGACTGTT
CCCATGAAAATACAGTAAAACGATGCAGTATTCCGATCGTGAGCGTTGAT
CACAAATCCGGTAAAACTGGACAATATTTCAATTTCGATCGAAAATACAT
CAAAGAACTCTCAAACAACGGAAACTTGACGTTTCAAGCATACAACCTCC
GCACAGGACAGATCGGAGAAGTCATTGTTTGGGGTTCGGCCAATGGTGGA
ACCACTGGAGATTCTCATGGCAGATTCAACAGTAACAAAGTCGCTCCTAT
GCCTGGTCAGTGGCGAAAAGGTGATCGTCTTTACCCTGTCGACCAAGCTC
TGTGTTTGTAATTTTATTCAGCTGGTGAGGAGGCTTGCACAATCCCTGTC
TTGAGCGTGGACCATGCATTTGGCGAAAAAGTTACCGGTCAATATTTCAA
CTTCAATAGAGAACACATGTCTTGTTTGACACCTGGTAAACAAATCCAAT
TCTTAGCTTACAATCCTCGAACTTCCACCATCGGTGAAGTGGTGGTATGG
GGCGGTAGGAATGGCGGTTCTGTGGGTGACTCTCATGGAAGATTCAATTA
TCTGAATGTAAGGCCTGCACCAGGACAATGGCAAAGAGGAGATACAGTGG
TACCAATTGACTGTTCCCATGAAAATACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006307-exon-sc0000066-1575043694:482340..482659 | TCONS_00006307-exon-sc0000066-1575043694:482340..482659 | Clytia hemisphaerica | exon |
| TCONS_00006307-exon-sc0000066-1575043694:481589..482190 | TCONS_00006307-exon-sc0000066-1575043694:481589..482190 | Clytia hemisphaerica | exon |
| TCONS_00006307-exon-sc0000066-1510915933:482340..482659 | TCONS_00006307-exon-sc0000066-1510915933:482340..482659 | Clytia hemisphaerica | exon |
| TCONS_00006307-exon-sc0000066-1510915933:481589..482190 | TCONS_00006307-exon-sc0000066-1510915933:481589..482190 | Clytia hemisphaerica | exon |
| TCONS_00006307-exon-sc0000066-1491911889:482340..482659 | TCONS_00006307-exon-sc0000066-1491911889:482340..482659 | Clytia hemisphaerica | exon |
| TCONS_00006307-exon-sc0000066-1491911889:481589..482190 | TCONS_00006307-exon-sc0000066-1491911889:481589..482190 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000066 | supercontig | sc0000066:481589..482659 - |
Blast
The following BLAST results are available for this feature:
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