TCONS_00006302 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006302
Unique NameTCONS_00006302
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3038

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006302 ID=TCONS_00006302|Name=TCONS_00006302|organism=Clytia hemisphaerica|type=transcript|length=3038bp
TTCGTTCTACATTTAGTACAAGATTAAGATTGTGGTGATTGCAACTGATA
TATCCAAGATAACGATAGACAGGATTTACTGAGAAAGTATCAGAATTCAC
CGAACAATTTTTGAGGAGTTATTGAGCAATTTCGTGAAATTAGAAATCAA
AAAGGAAGATAAAGATGCCTGATCAATTACAATAAATACTGTTAAGGTTG
ATTATATGTGAATGATAAGTTATTGGGTAGAACTGAAGACTGATTGGATA
TCTTATGGTGTATTCAACGAGAAAGACAgatcaaaaacttgaaaataagG
CAGACAAGTTTCATGGgattgaaagttgaaatttatCATTTACAGTAATC
AAGGAAAATACAGTATTGTTGGAAGAAAGTTGAAACATTAAAATCAGTAG
CTAGAGGTGGGCATAACCTTTCAAAAAATTAGGTCACTGCGCCTGCTCAT
TGTTTATGATGCGTCTTGGTTTTTCAGttcaaacaatttcaaaaagttct
gAAGCTAGGTAACAGTCACCAAGATGCAGAGTAGGTCAAAAAGGAGCTGA
CCAGATTAAGCGATTCCGGTAGAATAGGAAAATAGTAACGAAAGGAAATC
TTCTCAAATCTTGGCGGctaccaaaaaagaaaaagaaggataAAAAAGCT
TTCAGAAAATGATGATGACAGAAAAGTTgttcagaaaaaaaaagttaatt
aaatTTCCTTTTGAAAGACAGGATACAACAgcaattataattttgaaaag
agATATTGTGAACAATAAAGAACAAAAGACGTGAAAGTCATTAGTATTTA
ATCACCTCCTCAttataacaaaaaaatgaaagaataatATAAGAGGCTAC
CACTGGTCATCTGATGATACCAAGGGGAGATCTAGTATTACATAAAAATT
AATCACCATTTATTCTATCCTGTTCTTCTatttattgtttttcaaaaaag
aaaagaatatttgtTCTTGCATCAATAATGGAACACCATGACTAATACCA
ATTCGCAATGCAATAGTTTCCTGTGGTTGTGCTTCACTTTCAATTGATTT
GTTTCTTTGCGTCTTTTTAGCGCCAGGGTGTGactttttgtttactttaa
aaATCCTGGATGGAATTGCTTCCCTTTTTGTACATCATCTAGAACTGGTA
TGAAAACCAATGACTTTTTCATTTCAGACGTAAAATAAATGAACTTAAAA
AAGTCGATATAAAAGTGATACAATAGTTACCAAAGATGTCATCTTTTACA
TTGGTATTATCATTATGTATTTTATCTTGTGGTGTGCTTGGAAATTCTAA
CAATAAGGTCAACCTTCCAACCATGGTTTGGGACCCGAACAATGCAATtt
tcaCTTGCAAAGAACCAGTATTTCGTATTCGAAAATCGGACAAGCTTTCT
GTCAACTGTGGCATGCACAATGTACATAATTATTTACGTTTTGGCGCACC
AAGCTTTAATCAACCAACAACACAAGTCATGTTTGTAGAGACAgaaaaag
aatacaatcaatgTAACATTACTGCTGGAAAACCAATCTTGAGATGTAAT
GCTGATTCAAATGAGAGAGCGGCACCAAGTTGCGTTAAAGGGATCAATTG
CACTCAAAACGTACCCTTAGAATTTGATGAACATTACCCAATACCGGTCG
GTTTGAGAGCTGGTAAAATGTATCATTTCATTGGAGCCTCTGGTGCCAGT
AATGCTCCTTGCATCGGCAATGATACCATGTTTAAAGAACCAATGAAATT
CCGAGTGTACGTTTGCACAGATGAAGAGGAGGATGAAGGACTGTGTGAAC
CATGTCAAACGGAAAGCTGCTACCATTCACGCTGCCAAGAAACGTGTACT
GAATGGGTAGACAGCTCTGAAAACATTTTCCAAGATAAAGAAGGCAAATG
TTTCAAAACCCAAAAGAAGACTTGTACATCGAACCTTGTCGCTATTAGTC
AAACTGATACTCGTGAAGAAAGAATCGCTTGTCCACAACCAAAATGCGAA
AAATGGAGACAATCGAAAGCTCTTCTTTACAAAGATGGAGTTTGCTCAAA
ACTGAGAGAGCGCGAATGCATTGATTTCCGTGGGAATAATACAATCCAAA
GAGAAATGGACGAGCTTGCATGTCCACCCAAAACATGTCAAATATGGAGC
GTCCTGGAGAAAATCAAAGTCACAACATCACAAGGAGACAAATGTTCGGA
AAAACGACAACGCTTTTGTTCGTTCAAAACAGAAGACAATCAAGAGCAAG
CTATAGTTGAAAATAAGGAATTTGAAGTTAATTGCACTCAACCTACACTA
CCTCCACCAATTATCATCACTACGGAAGAAACCAAACCACCACCATCACC
TTCAGTAGCGGCTAAAATTGTTTATAGAGAAAATACTGATAAGGAGACTT
ATATTTACATCATCATTGCTGCCAGCTTTGGTTCCTTAATTGTTGGTATC
ATGTTGGGCTTCTGTATAACAAAATGTTGTCAAAGAAATTCGAAATCAGA
AGTGATTAAAACTGTTGAGAAAATGATGCCATTAGAGGGAGTAGGTCCAG
TGGTAGCTTATGAAAACAAGAACTTCACCTTAAATCCAGTGATGGAGGAA
GGACAATTAGCAGACGTCGAATTCGTTCCAGCCACGGCGACGATTGGTAA
TACTAAACGGCAAGTTATGGTCGCTAGAAGCGTCTCCTTTTACACACCAG
AGGACCTTCAACAGGGAGGCAAAATTGATCGCCGTAATAGCGAAGGCAAT
AGACGGGCTTATCGGCCCCCGCGTACGATCAATGAATCGAGTCGTAATGT
AATGCGACATCCTAGCGCGACCTCTAAGACTGTTTTAATACGTAATCATA
GTGACGTTACAGAACGTACGTCGTCAGAAAGTGACGGGTCAGTGTTTCAT
TTGAGACAACCTGATGATCGTACTTCTGAAGAAGTTTGAGTGGAAAGATC
ACCAAAAATCACCAGGATAATGGAATGGATGAAATCCCTTGTGAAGAGGC
GAAGAAGGGCGAGAGGTCAGTCATACAAAGACACTAGA
Run BLAST on NCBI

transcript from alignment at sc0000066:284851..290736-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006302 ID=TCONS_00006302|Name=TCONS_00006302|organism=Clytia hemisphaerica|type=transcript|length=5886bp|location=Sequence derived from alignment at sc0000066:284851..290736- (Clytia hemisphaerica)
TTCGTTCTACATTTAGTACAAGATTAAGATTGTGGTGATTGCAACTGATA
TATCCAAGATAACGATAGACAGGATTTACTGAGAAAGTATCAGAATTCAC
CGAACAATTTTTGAGGAGTTATTGAGCAATTTCGTGAAATTAGAAATCAA
AAAGGAAGATAAAGATGCCTGATCAATTACAATAAATACTGTTAAGGTTG
ATTATATGTGAATGATAAGTTATTGGGTAGAACTGAAGACTGATTGGATA
TCTTATGGTGTATTCAACGAGAAAGACAGATCAAAAACTTGAAAATAAGG
CAGACAAGTTTCATGGGATTGAAAGTTGAAATTTATCATTTACAGTAATC
AAGGAAAATACAGTATTGTTGGAAGAAAGTTGAAACATTAAAATCAGTAG
CTAGAGGTGGGCATAACCTTTCAAAAAATTAGGTCACTGCGCCTGCTCAT
TGTTTATGATGCGTCTTGGTTTTTCAGTTCAAACAATTTCAAAAAGTTCT
GAAGCTAGGTAACAGTCACCAAGATGCAGAGTAGGTCAAAAAGGAGCTGA
CCAGATTAAGCGATTCCGGTAGAATAGGAAAATAGTAACGAAAGGAAATC
TTCTCAAATCTTGGCGGCTACCAAAAAAGAAAAAGAAGGATAAAAAAGCT
TTCAGAAAATGATGATGACAGAAAAGTTGTTCAGAAAAAAAAAGTTAATT
AAATTTCCTTTTGAAAGACAGGATACAACAGCAATTATAATTTTGAAAAG
AGATATTGTGAACAATAAAGAACAAAAGACGTGAAAGTCATTAGTATTTA
ATCACCTCCTCATTATAACAAAAAAATGAAAGAATAATATAAGAGGCTAC
CACTGGTCATCTGATGATACCAAGGGGAGATCTAGTATTACATAAAAATT
AATCACCATTTATTCTATCCTGTTCTTCTATTTATTGTTTTTCAAAAAAG
AAAAGAATATTTGTTCTTGCATCAATAATGGAACACCATGACTAATACCA
ATTCGCAATGCAATAGTTTCCTGTGGTTGTGCTTCACTTTCAATTGATTT
GTTTCTTTGCGTCTTTTTAGCGCCAGGGTGTGACTTTTTGTTTACTTTAA
AAATCCTGGATGGAATTGCTTCCCTTTTTGTACATCATCTAGAACTGGTA
TGAAAACCAATGACTTTTTCATTTCAGACGTAAAATAAATGAACTTAAAA
AAGTCGATATAAAAGTGATACAATAGTTACCAAAGATGTCATCTTTTACA
TTGGTATTATCATTATGTATTTTATCTTGTGGTGTGCTTGGAAATTCTAA
CAATAAGGTCAACCTTCCAACCATGGTTTGGGACCCGAACAATGCAATGT
AAGATCATTCTTGCAATTCTATATTTCAATTGACAATTAAAATAGTTGAT
TTTTCATTAGTTGAAGAGTTATTCATAATTTTCATCCTCTGGCTTTAACA
AAACCAATGCGAAAAAGATTCCCTTTGTTTCCAATATAATTGATTACAAA
TCATTTCTTCTTCTTCAGTTTCACTTGCAAAGAACCAGTATTTCGTATTC
GAAAATCGGACAAGCTTTCTGTCAACTGTGGCATGCACAATGTACATAAT
TATTTACGTTTTGGCGCACCAAGCTTTAATCAACCAACAACACAAGTCAT
GTTTGTAGAGACAGAAAAAGAATACAATCAATGTAACATTACTGGTAAGG
CATTTTTTATTTCTTGCACTGTCATGTTTGTGGTAGATGGTTTTCACTTT
TGAATCTAATGCTTGTTGTTCTTGAATGAGTTTGTGGTGAAAGAAAGTTT
CATTTCTATATGTAACGCAAAAGTCATGCTTGTGGTGTAGTTTTTGTGAG
AAAATTGTATGCTTTTCATATTCGAGTGCAATTCTTGTTGTAAGATTTTT
TTCAATTTGAAGTTAATTCGATTTTAAGTTCTTTGGTTTTCAAGAATCTA
TTATGTTTGTGATTTTAGCTGGAAAACCAATCTTGAGATGTAATGCTGAT
TCAAATGAGAGAGCGGCACCAAGTTGCGTTAAAGGGATCAATTGCACTCA
AAACGTACCCTTAGAATTTGATGAACATTACCCAATACCGGTCGGTTTGA
GAGCTGGTAAAATGTATCATTTCATTGGAGCCTCTGGTGCCAGTAATGCT
CCTTGCATCGGCAATGATACCATGTTTAAAGAACCAATGAAATTCCGAGT
GTACGTTTGCACAGATGAAGAGGAGGATGAAGGACTGTGTGAACCATGTC
AAACGGAAAGCTGCTACCATTCACGTAAGTGTGCATTATATTGTATGTAA
ATTGTACTGTATAAAACACCTCGGGAACACTTTCTTTCTGCTACAGTAAC
CATAGGCAGGTGTATTGAATTTTTAACATTCTTCATACCATCTTAGGAAT
ATCAGTATGACAAATTTTTATCACAGAAATTCTCAATATTTCTTTATATT
TTCACATTACAGGCTGCCAAGAAACGTGTACTGAATGGGTAGACAGCTCT
GAAAACATTTTCCAAGATAAAGAAGGCAAATGTTTCAAAACCCAAAAGAA
GACTTGTACATCGAACCTTGTCGCTATTAGTCAAACTGATACTCGTGAAG
AAAGAATCGCTTGTCCACAACCAAAATGCGAAAAATGGAGACAATCGAAA
GCTCTTCTTTACAAAGATGGAGTTTGCTCAAAACTGAGAGAGCGCGAATG
CATTGATTTCCGTGGGAATAATACAATCCAAAGAGAAATGGACGAGCTTG
CATGTCCACCCAAAACATGTCAAATATGGAGCGTCCTGGAGAAAATCAAA
GTCACAACATCACAAGGAGACAAATGTTCGGAAAAACGACAACGCTTTTG
TTCGTTCAAAACAGAAGACAATCAAGAGCAAGCTATAGTTGAAAATAAGG
AATTTGAAGTTAATTGCACTCAACCTACACTACCTCCACCAATTATCATC
ACTACGGAAGAAACCAAACCACCACCATCACCTTCAGTAGCGGCTAAAAT
TGTTTATAGAGAAAATACTGATAAGGAGACTTATATTTACATCATCATTG
CTGCCAGCTTTGGTTCCTTAATTGTTGGTATCATGTTGGGCTTCTGTATA
ACAAAATGTTGTCAAAGAAATTCGAAATCAGAAGTGATTAAAACTGTTGA
GAAAATGATGCCATTAGAGGGAGTAGGTAAGACACCACAAAAAATTTATT
TTTGGGTATTTTTGACTTGTATAATTTGCGATTCTACACTGCAAACGTTT
GCAAAACGAAGGTTTTTCAAATTGCTCAATTTCACTTTGGAAATAGATAC
TTTAAGTCTCTTGTTGTCATATCAATTAAAAAAACGATCAAAAATAAAAA
AGTGTTCATAATAGATATCGGATGCTTAAGTGATTAATAATCATTTCCTT
TTGTTTTTCAATCAATTTCAGGTCCAGTGGTTGCTTATGAAAACAAAAAC
TTCACCTTAAATCCAGTAATGGAGGAAGGACAATTAGCAGACGTCGAATT
TGTTCCAGCCACGGCGACGATTGGTAATACTAAACGGCAAGTTATGGTCG
CTAGAAGCGTCTCCTTTTACACACCAGAGGACCTTCAACAGGGAGGCAAA
ATTGATCGCCGTAATAGCGAAGGCAATAGACGGGCTTATCGGCCCCCGCG
TACGATCAATGAATCGAGTCGTAATGTAATGCGACATCCTAGCGCCACCT
CTAAGACTGTTTTAATACGTAATCATAGTGACGTTACAGAACGTACGTCG
TCAGAAAGTGACGGGTCAGTGTTTCATTTGAGACAACCTGATGATTGTAC
TTCGGAAGAAGTTTGAGTGGAAAGATCACCAGGATGATGAAATGGATGAA
ATCCCTTGTGAAGAGGCGAAGAAGGGTGAGAGGTCAGTCATACAAAGACA
CTAGACGACTCTCTGTACTGTGAATCGCAGTAATCAGTGCCTGTCTTCCT
GAAAAGACAAGACAAAGAACCAACCACGGATGTTACTTTTGTCACTTGGA
TATTTTTGTAAATAAACTGATCCAGAAGAAACATGAGAAAAATGGAAATG
GACAAAAGCAAAGAAGTAACTAATAACTGGGAGATGACTTCCAAAAATCA
TTTACATATATCTTCGTTTGCCAACACATATCAATTTGAATACGTGCTCT
TGATAAACCATAAATTACCACGTGCTGTAATGAAACAACTAAAATATTTG
AATCAAATAAATCTTGTAAATAGTAATTAATTATTTTGATGATGAAGAGA
AATGGATTTTATTTTTATGATGAAACAAAACTTCATTTGACTGGGATATT
CTGACCGATTGGTATCACTAAGATTTCAGGGAAATCTGCCAGACAGAATA
ATCATGACATCAAATGTGACCTTACCACTCTTGATTGGCAATGCTCCAAG
ATCTTGTCTTGACAATCTATCAANNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNTTGAAATTATATTTACAGTTAATTGTGTTAGTTATAAAAATATTTT
TTAATTCAATCTGAGCAGTATTTTACAAAAAGAGGTTTAGAAAGGTCTTA
GTTTGAAATCTCAAGGAACAAAGGTTCAATTTATGCAGATTTTGGTTGAT
ATTTTTAAAAGATTCCGAAAGAGCCAAAGTCAAGTCACTATCATTATTTC
CATGATCAAAAATTTCCAAAAGATTGATGAAATACACGATGGACCTGACA
ATTTAATGTCGTCAATTAAAGACTTAATTTATACAACTTTCAAAAAGTTA
CGAAAACAATCTGGCACACATCAATTCTGCACATTCACGATNTTGTTGGT
ATCATGTTGGGCTTCTGTATAACAAAATGTTGTCAAAGAAATTCGAAATC
AGAAGTGATTAAAACTGTTGAGAAAATGATGCCATTAGAGGGAGTAGGTA
AGACACCACAAAAAATTTATTTTTGGGTATTTTTGACTTGTATAATTTGC
GATTCTACACTGCAAACGTTTGCAAAACGAAGGTTTTTCAAATTGCTCAA
TTTCACTTTGGAAATAGATACTTTAAGTCTCTTGTTGTCATATCAATTAA
AAAAACGATCAAAAATAAAAAAGTGTTCATAATAGATATCGGATGCTTAA
GTGATTAATAATCATTTCCTTTTGTTTTTCAATCAATTTCAGGTCCAGTG
GTAGCTTATGAAAACAAGAACTTCACCTTAAATCCAGTGATGGAGGAAGG
ACAATTAGCAGACGTCGAATTCGTTCCAGCCACGGCGACGATTGGTAATA
CTAAACGGCAAGTTATGGTCGCTAGAAGCGTCTCCTTTTACACACCAGAG
GACCTTCAACAGGGAGGCAAAATTGATCGCCGTAATAGCGAAGGCAATAG
ACGGGCTTATCGGCCCCCGCGTACGATCAATGAATCGAGTCGTAATGTAA
TGCGACATCCTAGCGCGACCTCTAAGACTGTTTTAATACGTAATCATAGT
GACGTTACAGAACGTACGTCGTCAGAAAGTGACGGGTCAGTGTTTCATTT
GAGACAACCTGATGATCGTACTTCTGAAGAAGTTTGAGTGGAAAGATCAC
CAAAAATCACCAGGATAATGGAATGGATGAAATCCCTTGTGAAGAGGCGA
AGAAGGGCGAGAGGTCAGTCATACAAAGACACTAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003596XLOC_003596Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006302-exon-sc0000066-1575043694:289389..290736TCONS_00006302-exon-sc0000066-1575043694:289389..290736Clytia hemisphaericaexon
TCONS_00006302-exon-sc0000066-1575043694:289043..289218TCONS_00006302-exon-sc0000066-1575043694:289043..289218Clytia hemisphaericaexon
TCONS_00006302-exon-sc0000066-1575043694:288463..288768TCONS_00006302-exon-sc0000066-1575043694:288463..288768Clytia hemisphaericaexon
TCONS_00006302-exon-sc0000066-1575043694:287561..288274TCONS_00006302-exon-sc0000066-1575043694:287561..288274Clytia hemisphaericaexon
TCONS_00006302-exon-sc0000066-1575043694:284851..285344TCONS_00006302-exon-sc0000066-1575043694:284851..285344Clytia hemisphaericaexon
TCONS_00006302-exon-sc0000066-1510915933:289389..290736TCONS_00006302-exon-sc0000066-1510915933:289389..290736Clytia hemisphaericaexon
TCONS_00006302-exon-sc0000066-1510915933:289043..289218TCONS_00006302-exon-sc0000066-1510915933:289043..289218Clytia hemisphaericaexon
TCONS_00006302-exon-sc0000066-1510915933:288463..288768TCONS_00006302-exon-sc0000066-1510915933:288463..288768Clytia hemisphaericaexon
TCONS_00006302-exon-sc0000066-1510915933:287561..288274TCONS_00006302-exon-sc0000066-1510915933:287561..288274Clytia hemisphaericaexon
TCONS_00006302-exon-sc0000066-1510915933:284851..285344TCONS_00006302-exon-sc0000066-1510915933:284851..285344Clytia hemisphaericaexon
TCONS_00006302-exon-sc0000066-1491911889:289389..290736TCONS_00006302-exon-sc0000066-1491911889:289389..290736Clytia hemisphaericaexon
TCONS_00006302-exon-sc0000066-1491911889:289043..289218TCONS_00006302-exon-sc0000066-1491911889:289043..289218Clytia hemisphaericaexon
TCONS_00006302-exon-sc0000066-1491911889:288463..288768TCONS_00006302-exon-sc0000066-1491911889:288463..288768Clytia hemisphaericaexon
TCONS_00006302-exon-sc0000066-1491911889:287561..288274TCONS_00006302-exon-sc0000066-1491911889:287561..288274Clytia hemisphaericaexon
TCONS_00006302-exon-sc0000066-1491911889:284851..285344TCONS_00006302-exon-sc0000066-1491911889:284851..285344Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000066supercontigsc0000066:284851..290736 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0877852	0.146735	0.0104483	0.0849175	0.979819	0.804626	0.292392	0.427934	1.75399	0.00144988	0.000624225	6.83059	9.00117	4.7362	14.0296	12.3969	2.78294	4.82121	0.253851	0.436797	0.233878	0.205518	0	0.0016296	0.163366	0.0908127	0.719695	0	0.042583	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006302 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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