|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006299 ID=TCONS_00006299|Name=TCONS_00006299|organism=Clytia hemisphaerica|type=transcript|length=2601bp
GTATTGTTTCCCCTTAAACAATAGGCTCCTTTCTTCCCACTTACAAAAGT
TTAAAATAGATtgtgaatttaaaaaagatgaTATGAAGTTCAACTCTGAT
CGCCTTTcggtctttcttttctttctttccaaATCCTCGGGAGAAGGTGG
ATAAATTACTGACCGCAAAGTTTTTGCAACTGACCCAAGGTTACAGCAGA
GAAAGGGAGATCTCTCATTTTATCATACTCAAGAGATTAAGAAGATTCTC
AGTCCAACAATTGCTTGAGATTTTGTTATACACAAATAAATTTGTTCATT
GTGTTCAATGTATTGCGAGAAGCAAGGTGCTGGCCTGCTGCGTATATAAA
TTGGTAGGGTCGAAAAAGCTGAAGTTATTTCGCTCTCATACTGCTGGCCA
GTGAATATCAACTGAATGCAAAGAGAAAAGAGGAGTTTAAACATTCACTG
TTTTCGAAGGCGTGTGAACACATCAACTTATTGGTGCAGTGGGAAGCTTA
CAGCGTGTGCAGAGTCAACGGTGCTGTTCCTAAGAATTACAACATCAAGC
AGCTTCGCGGAGTAAGCGGCACTGAGATTGAACAGTTTACAACCTCTAAC
TTAATATAAACATTGAGCACCAGACGTCGCACCGCGATGAGTGATACTTA
TGATAGCGCATATCGTGGTTTGAGGCAAAACACTTCGACAGCAGTTGGAC
AGATCGCAACTACTTTATACAATGGATTGCAAGGCGCCACCAACAACAAC
ACAACTTACCACAACACATCGCTACACTCCAATTGTGGTGCTTCTTCGGC
CGCAGCGCTCGCTTCGAATTATCTTTCACACACAGACTACATGTCACCTA
CATCCCACTTAACACCGAAGCAAGACTCAACAACCGCTCATCATTTATCA
CAGAGTCTTACCAACAGCGCCACAAATCTCCCATACTATGACTCCATGAG
TGCCAACACCTCCAACACAACTGGTTTTGGAGTATCCTCGGGCAAATACT
CGCCACACTCTTACCGATCTTCGTCGTCATCTTCTTACTCACAttaccaa
aaccaaaacaacaaCCAATTGACCAACAACCATAGTTTGAATGGAGGTGC
GTCTACAACAACCGATCTCTCATCCAACACGCATCCATACTACTCCTCCT
TCATACCACCTCCACCGACCACCAGATCTTCGTATCCAACATCCAGCTTT
GCACATTCACCTTACTCTCTAGATTCTGATTTCTGTGGACGTACAGCTCG
CTATGGTTCCAATTCACCAGGTAGTCTCCATAACCAATACCTTGATCAAT
CACTTCTTCACCAAGTCACCGCACCAGGGATGTTCTATCCATACATTCGA
CCACATCCTGGCAGCAACTATATCATGACGTGTATGTGGATTGAACAGCA
TGGTTTCGCCAAACTCAAACCGTGCGGACGTCAATTCACAACGATGCAAG
ATATCGTCAACCATCTCAATGAAGAACACGTCCAAACCGCCGATACTGGA
AATGGTTTATACGTCTGTCAATGGCAAAATTGTCCGCGCAATGGTCTACC
GTTCAAAGCCAAGTACAAATTAGTCAATCATCTACGTGTGCATACCGGAG
AGAAACCGTTTCCATGCCCGTTTCCCGGTTGTGGGAAATTATTCGCCCGA
TCGGAGAACTTGAAGATTCACAAGAGGACGCATACGGGTGAGCGTCCTTT
TTTATGTGAATTCAGCGGCTGTGGGCGCCGTTTCGCTAATTCTTCCGATC
GTAAGAAACACTCACACGTTCACACTTCTGATAAGCCGTACACTTGTCGA
ATCAGCACATGCAACAAAAGTTATACACACCCTTCTTCACTTCGTAAACA
CACCAAATTGCACGGGGAAGGTTCTGACTCTGAAGCTGGAAGTCCACTTC
CAGGAGAAATGTCCCCTGAACAACAACTCAACGACTTAAAATCTGAACAT
TTAGACCATGGCACTGGAAATGCATCCCTTCTGACGGCATCTTAACGCAC
CCATGGAACACCCATCCACCCATCCGCCCGTCTGATCGCCTCAAGTTCAT
CAATGGAAGAAAGGGTGCAAAAAGAATGAAACAAAGACTTTTGGGTAACT
TTAATTcttattaaatgaaaaatgtaaatatgTAATATAGCGCAATGGAT
GATGAATCGTTATTTAGTATctttatttcttatttaaagtatttttgctT
TGCTATTCTTTATTTTGATCGCCTTATGCTTGCCTTACTCTATTTCAAGT
GAGTTATTTTAGGGGACTAGCCTACGCTTATGAGCCAAAtacttttttag
agtttttcttttaaaaacgcGGGGTTCGTTTCACCGTACTTATCTTTAGC
GACAATTTCGGCAAAAATTACCACAGAGCCGTAGGTTGGCCTATTAAATG
ATGCAATAAttcttcactttttaaaaaaacaacaacaacatcttAAGTTT
CACAATTGGTCTCTTTATTCTGCATTTTATTTATcgtcgtttttttttta
ctttattttattCTAATATGAATTCACACTTTGTACACCTTGTAATTTTA
TTTATGATAGTtgtattttgcatttttaaaaagaaatatctTAAATTCtc
a Run BLAST on NCBI transcript from alignment at sc0000066:214603..217203- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006299 ID=TCONS_00006299|Name=TCONS_00006299|organism=Clytia hemisphaerica|type=transcript|length=2601bp|location=Sequence derived from alignment at sc0000066:214603..217203- (Clytia hemisphaerica)
GTATTGTTTCCCCTTAAACAATAGGCTCCTTTCTTCCCACTTACAAAAGT
TTAAAATAGATTGTGAATTTAAAAAAGATGATATGAAGTTCAACTCTGAT
CGCCTTTCGGTCTTTCTTTTCTTTCTTTCCAAATCCTCGGGAGAAGGTGG
ATAAATTACTGACCGCAAAGTTTTTGCAACTGACCCAAGGTTACAGCAGA
GAAAGGGAGATCTCTCATTTTATCATACTCAAGAGATTAAGAAGATTCTC
AGTCCAACAATTGCTTGAGATTTTGTTATACACAAATAAATTTGTTCATT
GTGTTCAATGTATTGCGAGAAGCAAGGTGCTGGCCTGCTGCGTATATAAA
TTGGTAGGGTCGAAAAAGCTGAAGTTATTTCGCTCTCATACTGCTGGCCA
GTGAATATCAACTGAATGCAAAGAGAAAAGAGGAGTTTAAACATTCACTG
TTTTCGAAGGCGTGTGAACACATCAACTTATTGGTGCAGTGGGAAGCTTA
CAGCGTGTGCAGAGTCAACGGTGCTGTTCCTAAGAATTACAACATCAAGC
AGCTTCGCGGAGTAAGCGGCACTGAGATTGAACAGTTTACAACCTCTAAC
TTAATATAAACATTGAGCACCAGACGTCGCACCGCGATGAGTGATACTTA
TGATAGCGCATATCGTGGTTTGAGGCAAAACACTTCGACAGCAGTTGGAC
AGATCGCAACTACTTTATACAATGGATTGCAAGGCGCCACCAACAACAAC
ACAACTTACCACAACACATCGCTACACTCCAATTGTGGTGCTTCTTCGGC
CGCAGCGCTCGCTTCGAATTATCTTTCACACACAGACTACATGTCACCTA
CATCCCACTTAACACCGAAGCAAGACTCAACAACCGCTCATCATTTATCA
CAGAGTCTTACCAACAGCGCCACAAATCTCCCATACTATGACTCCATGAG
TGCCAACACCTCCAACACAACTGGTTTTGGAGTATCCTCGGGCAAATACT
CGCCACACTCTTACCGATCTTCGTCGTCATCTTCTTACTCACATTACCAA
AACCAAAACAACAACCAATTGACCAACAACCATAGTTTGAATGGAGGTGC
GTCTACAACAACCGATCTCTCATCCAACACGCATCCATACTACTCCTCCT
TCATACCACCTCCACCGACCACCAGATCTTCGTATCCAACATCCAGCTTT
GCACATTCACCTTACTCTCTAGATTCTGATTTCTGTGGACGTACAGCTCG
CTATGGTTCCAATTCACCAGGTAGTCTCCATAACCAATACCTTGATCAAT
CACTTCTTCACCAAGTCACCGCACCAGGGATGTTCTATCCATACATTCGA
CCACATCCTGGCAGCAACTATATCATGACGTGTATGTGGATTGAACAGCA
TGGTTTCGCCAAACTCAAACCGTGCGGACGTCAATTCACAACGATGCAAG
ATATCGTCAACCATCTCAATGAAGAACACGTCCAAACCGCCGATACTGGA
AATGGTTTATACGTCTGTCAATGGCAAAATTGTCCGCGCAATGGTCTACC
GTTCAAAGCCAAGTACAAATTAGTCAATCATCTACGTGTGCATACCGGAG
AGAAACCGTTTCCATGCCCGTTTCCCGGTTGTGGGAAATTATTCGCCCGA
TCGGAGAACTTGAAGATTCACAAGAGGACGCATACGGGTGAGCGTCCTTT
TTTATGTGAATTCAGCGGCTGTGGGCGCCGTTTCGCTAATTCTTCCGATC
GTAAGAAACACTCACACGTTCACACTTCTGATAAGCCGTACACTTGTCGA
ATCAGCACATGCAACAAAAGTTATACACACCCTTCTTCACTTCGTAAACA
CACCAAATTGCACGGGGAAGGTTCTGACTCTGAAGCTGGAAGTCCACTTC
CAGGAGAAATGTCCCCTGAACAACAACTCAACGACTTAAAATCTGAACAT
TTAGACCATGGCACTGGAAATGCATCCCTTCTGACGGCATCTTAACGCAC
CCATGGAACACCCATCCACCCATCCGCCCGTCTGATCGCCTCAAGTTCAT
CAATGGAAGAAAGGGTGCAAAAAGAATGAAACAAAGACTTTTGGGTAACT
TTAATTCTTATTAAATGAAAAATGTAAATATGTAATATAGCGCAATGGAT
GATGAATCGTTATTTAGTATCTTTATTTCTTATTTAAAGTATTTTTGCTT
TGCTATTCTTTATTTTGATCGCCTTATGCTTGCCTTACTCTATTTCAAGT
GAGTTATTTTAGGGGACTAGCCTACGCTTATGAGCCAAATACTTTTTTAG
AGTTTTTCTTTTAAAAACGCGGGGTTCGTTTCACCGTACTTATCTTTAGC
GACAATTTCGGCAAAAATTACCACAGAGCCGTAGGTTGGCCTATTAAATG
ATGCAATAATTCTTCACTTTTTAAAAAAACAACAACAACATCTTAAGTTT
CACAATTGGTCTCTTTATTCTGCATTTTATTTATCGTCGTTTTTTTTTTA
CTTTATTTTATTCTAATATGAATTCACACTTTGTACACCTTGTAATTTTA
TTTATGATAGTTGTATTTTGCATTTTTAAAAAGAAATATCTTAAATTCTC
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006299-exon-sc0000066-1575043694:214603..217203 | TCONS_00006299-exon-sc0000066-1575043694:214603..217203 | Clytia hemisphaerica | exon |
| TCONS_00006299-exon-sc0000066-1510915933:214603..217203 | TCONS_00006299-exon-sc0000066-1510915933:214603..217203 | Clytia hemisphaerica | exon |
| TCONS_00006299-exon-sc0000066-1491911889:214603..217203 | TCONS_00006299-exon-sc0000066-1491911889:214603..217203 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000066 | supercontig | sc0000066:214603..217203 - |
Blast
BLAST of TCONS_00006299 vs. Swiss-Prot (Human)
Match: ZIC4 (Zinc finger protein ZIC 4 OS=Homo sapiens GN=ZIC4 PE=2 SV=3) HSP 1 Score: 256.144 bits (653), Expect = 6.075e-77 Identity = 119/190 (62.63%), Postives = 141/190 (74.21%), Query Frame = 1
Query: 1321 APGMFYPYIRPHPGSNYIMTCMWIEQHGFAKLKPCGRQFTTMQDIVNHLNEEHVQTADTGNGLYVCQWQNCPRNGLPFKAKYKLVNHLRVHTGEKPFPCPFPGCGKLFARSENLKIHKRTHTGERPFLCEFSGCGRRFANSSDRKKHSHVHTSDKPYTCRISTCNKSYTHPSSLRKHTKLHGEGSDSEAG 1890
PG F+ Y+R P ++ C W+ G A C + F+TM ++V H+ EHV + N ++C W+ CPR G PFKAKYKLVNH+RVHTGEKPFPCPFPGCGK+FARSENLKIHKRTHTGE+PF CEF GC RRFANSSDRKKHSHVHTSDKPYTC++ C+K YTHPSSLRKH K+HG +G
Sbjct: 112 GPGAFFRYMR-QPIKQELI-CKWLAADGTATPSLCSKTFSTMHELVTHVTVEHVGGPEQAN--HICFWEECPRQGKPFKAKYKLVNHIRVHTGEKPFPCPFPGCGKVFARSENLKIHKRTHTGEKPFRCEFEGCERRFANSSDRKKHSHVHTSDKPYTCKVRGCDKCYTHPSSLRKHMKVHGRSPPPSSG 297
The following BLAST results are available for this feature:
|
