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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006282 ID=TCONS_00006282|Name=TCONS_00006282|organism=Clytia hemisphaerica|type=transcript|length=916bp
gggacgtaattcgcgaaattaaattccgtgaaacacaccaaaattgtaaa
tcgcgaaattaaattccgcaaaattcaattttttttcttcttcttttatt
ttgttgtttttgaccaggtgtcAGGCGCTTCCCGCGATCACGGTATAATT
GTGTATACCGCGATCGCGGGATCTGGTATTGAGCGTTAGCTGTATTTCCA
CCGCGTGTTACTAAATGGATTATACGCTTTATATAGGTAATTTTCGCAAG
CTCTAATTAACTGGTTTCCCTTCTTCGATAAATTTGGGAGATAATAGTCC
acggaaaaaaaaatctatgcacggaaatttgaaatataaacaGTCAAACA
TTGCAGAGATAATACGACTCAgtgattatttttctttaaacttaCACCGC
GATCGCGGCATAGCAATGGAACGTCTTCAATCAATAATACTGCGATCGCg
ggaaaaaaaatcacaaaaacaaaacaaaaccaacACTGACAAACAACAAC
CACTGCAGTTCAAGAAGCATACAtcaaatttttaaagaaaaatggacTCA
CTATCAGAAGACCCGTATCAACCGACCATCAATGCGTCAAttgaaagtga
cgaatttggaTCGCCGAGCATTGGTCGACAACTCTTGCCCCCGCTATCAT
CGTCATTTAACTTGGGGTCAAATGAAGAAATGCCGAGCATACAAATGTTG
ATTGCAGATATCCTGTCAAAGGATAGTTCAGACACACCAAACTTGTCCCA
AACCATCCAACTATTGTCAGACGACGCAGGCGCGGCAAACCTGTCTCAAA
CCGTTCAACCATCGTCAAACGATGCAGGCGCGGCAAACCTGCCCAAAACC
GTTCAACCATCGTCAAACGATGCAGGCGCGGCAAACCTGCCCAAAACCGT
TCAACCATCGTCAAAC Run BLAST on NCBI protein sequence of TCONS_00006282-protein >TCONS_00006282-protein ID=TCONS_00006282-protein|Name=TCONS_00006282-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
MDSLSEDPYQPTINASIESDEFGSPSIGRQLLPPLSSSFNLGSNEEMPSI
QMLIADILSKDSSDTPNLSQTIQLLSDDAGAANLSQTVQPSSNDAGAANL
PKTVQPSSNDAGAANLPKTVQPSSN Run BLAST on NCBI transcript from alignment at sc0000066:762422..763822+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006282 ID=TCONS_00006282|Name=TCONS_00006282|organism=Clytia hemisphaerica|type=transcript|length=1401bp|location=Sequence derived from alignment at sc0000066:762422..763822+ (Clytia hemisphaerica)
gggacgtaattcgcgaaattaaattccgtgaaacacaccaaaattgtaaa
tcgcgaaattaaattccgcaaaattcaattttttttcttcttcttttatt
ttgttgtttttgaccaggtgtcAGGCGCTTCCCGCGATCACGGTATAATT
GTGTATACCGCGATCGCGGGATCTGGTATTGAGCGTTAGCTGTATTTCCA
CCGCGTGTTACTAAATGGATTATACGCTTTATATAGGTAATTTTCGCAAG
CTCTAATTAACTGGTTTCCCTTCTTCGATAAATTTGGGAGATAATAGTCC
acggaaaaaaaaatctatgcacggaaatttgaaatataaacaGTCAAACA
TTGCAGAGATAATACGACTCAgtgattatttttctttaaacttaCACCGC
GATCGCGGCATAGCAATGGAACGTCTTCAATCAATAATACTGCGATCGCg
ggaaaaaaaatcacaaaaacaaaacaaaaccaacACTGACAAACAACAAC
CACTGCAGTTCAAGAAGCATACAtcaaatttttaaaggttggtaATACtt
ttctattgttattttctatTGTTAAGTACACTCCTTTTCTTTGATAAGGA
CCTTTCTAATAACGAGCCTTTTTTATGATAGATAGGGTTTGATACATAAA
AAATGTGGAttaaagttaagaacacttaGAATTCTGtccaaatttctgat
ttttataGAATAAAAGTATAAAACTTAAGACAATGGGTATATTATTTAGT
AAAACAACATTTTAGTCtattaaaaaaagttaacaTATGGCCACCACCAG
GGTTCGAACCTCGACGTTCGGCATGCGATGGTTTACGGGTCGGTGCTTTA
ACCACTGCACCACGAGTCCGTGTGCTTCAGACTCTGTATGATTTAGATTA
GTCTTGTTTTTTGTTATAATCCAGTACAATAATGAATAAAACATGTTCAT
TTAGTCAAAATAGATACATTAGAGGGGATGCTGCATGTGTTtcgtttgtt
attttttttacgttttctttagaaaaatggacTCACTATCAGAAGACCCG
TATCAACCGACCATCAATGCGTCAAttgaaagtgacgaatttggaTCGCC
GAGCATTGGTCGACAACTCTTGCCCCCGCTATCATCGTCATTTAACTTGG
GGTCAAATGAAGAAATGCCGAGCATACAAATGTTGATTGCAGATATCCTG
TCAAAGGATAGTTCAGACACACCAAACTTGTCCCAAACCATCCAACTATT
GTCAGACGACGCAGGCGCGGCAAACCTGTCTCAAACCGTTCAACCATCGT
CAAACGATGCAGGCGCGGCAAACCTGCCCAAAACCGTTCAACCATCGTCA
AACGATGCAGGCGCGGCAAACCTGCCCAAAACCGTTCAACCATCGTCAAA
C Coding sequence (CDS) from alignment at sc0000066:762422..763822+ >TCONS_00006282 ID=TCONS_00006282|Name=TCONS_00006282|organism=Clytia hemisphaerica|type=CDS|length=375bp|location=Sequence derived from alignment at sc0000066:762422..763822+ (Clytia hemisphaerica)
atggacTCACTATCAGAAGACCCGTATCAACCGACCATCAATGCGTCAAt
tgaaagtgacgaatttggaTCGCCGAGCATTGGTCGACAACTCTTGCCCC
CGCTATCATCGTCATTTAACTTGGGGTCAAATGAAGAAATGCCGAGCATA
CAAATGTTGATTGCAGATATCCTGTCAAAGGATAGTTCAGACACACCAAA
CTTGTCCCAAACCATCCAACTATTGTCAGACGACGCAGGCGCGGCAAACC
TGTCTCAAACCGTTCAACCATCGTCAAACGATGCAGGCGCGGCAAACCTG
CCCAAAACCGTTCAACCATCGTCAAACGATGCAGGCGCGGCAAACCTGCC
CAAAACCGTTCAACCATCGTCAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006282-exon-sc0000066-1491911889:762422..762958 | TCONS_00006282-exon-sc0000066-1491911889:762422..762958 | Clytia hemisphaerica | exon |
| TCONS_00006282-exon-sc0000066-1510915933:762422..762958 | TCONS_00006282-exon-sc0000066-1510915933:762422..762958 | Clytia hemisphaerica | exon |
| TCONS_00006282-exon-sc0000066-1575043694:762422..762958 | TCONS_00006282-exon-sc0000066-1575043694:762422..762958 | Clytia hemisphaerica | exon |
| TCONS_00006282-exon-sc0000066-1491911889:763444..763822 | TCONS_00006282-exon-sc0000066-1491911889:763444..763822 | Clytia hemisphaerica | exon |
| TCONS_00006282-exon-sc0000066-1510915933:763444..763822 | TCONS_00006282-exon-sc0000066-1510915933:763444..763822 | Clytia hemisphaerica | exon |
| TCONS_00006282-exon-sc0000066-1575043694:763444..763822 | TCONS_00006282-exon-sc0000066-1575043694:763444..763822 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000066 | supercontig | sc0000066:762422..763822 + |
Blast
The following BLAST results are available for this feature:
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