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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006279 ID=TCONS_00006279|Name=TCONS_00006279|organism=Clytia hemisphaerica|type=transcript|length=1449bp
TATATTCATTCTTGATGGAGGTTCATTTGAGTCCTGAAAAAACTGTGCAA
CGAAGATTGGAGGGACAAGGGAACGGATTCTTTTGGATTTTTACCTAATC
TCAGACTAAAAGAAGAAAGTATGTTaggttttttttaactgatatgtTCT
AGTACGTTAAGTCCCTTTCAAGATGAAACCATCCCCTTTTTAAAATCCCC
CTTTCTTCacgtttttatttgtttcatcTTCAGGGATTTAAGATCACCCT
ATAAATAGCTTacttcatcaaaaaaaaaaataataataataatacaacAC
AATGGCAACTGCAGTCGAACAATTAGGCAAGGAACctacaatcaaaacaa
aatctgCTCAAATCAAGACACTCATCCACAAACAGATCATTGACGTTGGG
GAGGATGTGTTTAAACGAACCAGTGAGAGACAACAGCAATTATTCGATGA
TTATCTCCTCAAACACGAATCAAATCTTCTCCAAAAACTcgatcaacaaa
aacaaaaagctttGAACGACCAGCGACAAAAACACCATGCAGATCtcaaa
agaatcaaagatgaataTTTGAAACTGCAGGAGGCGGCAATCAAAGAGCA
AGGAAAACGCGTAGAGAAACTGATGAATGAAAGAACTGATCGTTTACTGG
AGAAAAAACAACTCGATGGTCAACGCAGACTTGATGAAGCCCTGGTAGAA
GCGAGGGAAAAATTCAACAGTGAAAAGAAGGAATGTATAGACAACCTGAT
TCGAAAACTTCAAAAGGAATTCGATCAGAGGATGAAAGAAGAGCAAAATC
TTCACAAGGAGAACGTCCGAACTTTAAACGGTGAATGGAAAACTAAACTG
CAGAAAAACAATGAGGATAACGCAGTGAAGCTGTTGGATGAGCTGGAAAA
ACAACGCTTAGAACTTGATGAATATCACGTCAAAGAGACCAAACGACAGA
TGGACGCTCTTGAAACACTTCACCAAGGAGAATTAGCGGATTGCGAGAAA
GACATTcaagaaaagaagaaggaaaacgAGGAGTTGTCAGAAGAAATCGT
GAAACTGAAAGGTGATTTAGGAGAGATGAAACATTCTATGAGACTTGTTA
TGGAGACGTTTCGTGATTTCATCGAATCTTGTGAAGGTTTTGGTGAAGGA
CAAGCAGACTTTGTACTGGATCATCTGATACcccaaaaaattgaagaatt
tctAAGAAATTAATCTCTTGGTGTTTCTTCGCTCtgatttgaatttcaat
tattGAACGTGTGTTGTGTAAATAAAATGAGactgactttttattttttt
atatctgATAAATTTGACATACTGTACATAACCAAAGTATAATAAGTGTG
ATTTTACGAATAAATTAATGATCAAACcttattatttgatttttttaaca
tcTTAAGGCCCCTTCATCATCGATTGCACCAGGAAAATCTCCTGCTTCG Run BLAST on NCBI transcript from alignment at sc0000066:742792..748458+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006279 ID=TCONS_00006279|Name=TCONS_00006279|organism=Clytia hemisphaerica|type=transcript|length=5667bp|location=Sequence derived from alignment at sc0000066:742792..748458+ (Clytia hemisphaerica)
TATATTCATTCTTGATGGAGGTTCATTTGAGTCCTGAAAAAACTGTGCAA
CGAAGATTGGAGGGACAAGGGAACGGATTCTTTTGGATTTTTACCTAATC
TCAGACTAAAAGAAGAAAGTATGTTaggttttttttaactgatatgtTCT
AGTACGTTAAGTCCCTTTCAAGATGAAACCATCCCCTTTTTAAAATCCCC
CTTTCTTCacgtttttatttgtttcatcTTCAGGGATTTAAGATCACCCT
ATAAATAGCTTacttcatcaaaaaaaaaaataataataataatacaacAC
AATGGCAACTGCAGTCGAACAATTAGGCAAGGAACctacaatcaaaacaa
aatctgCTCAAATCAAGACACTCATCCACAAACAGATCATTGGTAAGTTG
GATACATTCTCTGCTGCTTAagactaaaaaaaaaacagcataAAAACACG
CATTTTAGGGGTCAATCAGTTGAGCACtttctttgatatcttttgaatgG
AATTTTTTATCACAGTGTTGCTGATCTACGATTTCAAGtttcatttttgt
gaaaatagtAATTATAGCGTATATATAGTAGTATTGTGCTGTGATCCTCA
GCTCCACTGAGGCCTAGTCCTATATTATAGGAAggtatatattatattat
agtAATTATAGCGCTATTCTacaagaatttcatttttttctttttccttt
tccttcacttttttgaacgaaattgaaaaacaaactaGTGGAAATATAAG
CGCatttaaatatcttttcaacgatacCAACCTTTTTATTATACGACAAA
TGCTCAAAAATTTATGGCTAAAAAATAAAGACACCACACACCTTTTTGAC
ACAGATATAAATactcaaaagttttaaaaacaggaAAATAAAGAATATTA
GTTTCCTTAAGCCAGGTCCCTAAAAACTTGATGTGTGCGATTTCGCCGAA
ATGTTGAATTGTTAGTTTgttgacttttttatttcagatatTTTTAACAA
GGATCCCATAATACCATAACATTGACGTCCTCAAAATTAACTGGGTGAAA
ATTGACAATTGTCTCTTAGTGTATTGTTGACCATGATTATTTACTTTCCA
CAGACGTTGGGGAGGATGTGTTTAAACGAACCAGTGAGAGACAACAGCAA
TTATTCGATGATTATCTCCTCAAACACGAATCAAATCTTCTCCAAAAACT
cgatcaacaaaaacaaaaagctttGAACGACCAGCGACAAAAACACCATG
CAGATCtcaaaagaatcaaagatgaataTTTGAAACTGCAGGTAAATCTT
CTAAATCCATCGAGTTTCAATATGCTAGTGAAGAAAGCAAGGAAAGTCTC
ACATCTTTTTATGTATTTCACAGCTCTTGAAAGTGTCATGTTCTTCATTT
TGAAAGCTTGAAATCATAATTTTGTCAGATTTTCttatcatgtttttgat
gatttataAGCCTGTGATTTTTGTTCCTTAAATTCTGTTCTCATTGAAAT
TTATGGTTCAATCTGTGTTTGAAATAGGAGGCGGCAATCAAAGAGCAAGG
AAAACGCGTAGAGAAACTGATGAATGAAAGAACTGATCGTTTACTGGAGA
AAAAACAACTCGATGGTCAACGCAGACTTGATGAAGCCCTGGTAGAAGCG
AGGGAAAAATTCAACAGTGAAAAGAAGGAATGTATAGACAACCTGATTCG
AAAACTTCAAAAGGAATTCGATCAGAGGATGAAAGAAGAGCAAAATCTTC
ACAAGGAGAACGTCCGAACTTTAAACGGTGAATGGAAAACTAAACTGCAG
GTATTTGAAATGATCTCTGTTCAtcgtttatatattttttttcatgcaGG
TATGGAGGGTTAAAACAGAAAAGTTTGTCCTATCTGATACATCACCAGGG
AGAACAGCCCAATTTTCCATTAATATTTCTGTAACATCTTTAGTCGATAA
AAGAGGGTGGGGTACGTAGGTAAAAATAGGTGCCAACGATAAGGGTCGGT
CTTTTAGCTTTTAAAGTCGGTAACAAAGTAACGGTTGCAAAAACAAGTCA
AAATACTTTAAGtttacaaactttcgcgagcagaaaccttcgcgaggtcg
aaaaatcgcaaaatttgcgacatttactttcgcgaatttgagaaaaaagt
gtttttcgctagcataaactttcgcgaatcgttagataaaaatgagaatt
tttgaataaaaattgccttaaaagtgaaaaatattccttaaatcagctaa
agacggttgctcttcaactttaaaaaggcattaaatgataacaatatgcc
gaaaatttgatatttattatgatttcgaggttttatagtttttcaattat
tttgagattttttcgcgagcataaactttcgcgaattgccctgataagaa
ttttcaaagccATGTACTTTGGCGAAAAAGGCTAAagttcgcgaaaatcg
cgaaagtttctgctcgcgaaagtttgtacgcctaaagtagtctGTAGGGA
TCCCCCTTTTGGTTCTTTTTAAGGACCATGAAAAGTCAAtaaaatctctc
taagggtaggagGTCCCCGCAGTGGTAATACTggtcacgatatcacgcaa
atttttgtcttcaagcACAATCAcacaaatcagcaaaaaaattggataat
tcaattcaattcaaaaatgatttatttgcctgcataatttaaactaaaat
ttacaatatGTGAAAAAATTACAATATAATTAGGTTGGGGAGCAGGCCAG
GCTCTGACCATCCATATAGAGGTTACCCGACTAATCAATGGGGTGACTAC
CTGGTTGCAAGTATATGTTTGGGATTTTAATAATAGGGGAGGGATTATTA
CACAACAACACATAAAAGTACCGATAGAACAAAAAAGATATTTAACAATT
AGAactgtaaaaatgaaaaataaaattttaatcaatttttcaaataagtc
tcaacttaaaaaaaggaaagtttCTCAAAGTTGATGAAGTACAGGTAAGG
ACATAATCAGAGTTAGCTGTGTAGGAGATTATCGGCTCTTTTGTTAAGCA
GATACAGAGACAGTGAACTTAGGTCTTCTTTTGAGTGCAATATTAGTTGG
TTCCAATTTAATATCGATTGGTATTTTACGGACTTTAAGCCATAGTTCAA
GGTGTTAGCTTTGGGACGTTCTAGGAGCTTCAGgttcatttttcttgttt
gatatGCATGAGAAAAGACTTTGAAATCAAAGGATTCCTGTAGTGCTGGT
GGAGAGATTTTGTTAATAGTTTGGTGTACAAGTTTGATGTTACACTTGAA
CACAGTTTGAGCGATTGTAGGTATACCAGTGTTTTCAAAAAGTTGAGAGG
TTTCAGCGTCAAAGTTAGAAAAAGCGAGGATGCGAAGACATCGTTTTTGG
AGTCGGCCAATTCTTGAGTTTTGAGTCAATCCTTGGCCCCAGACAATCTT
TGCGTAGAGCATAGTAAAGAGTTTTTATGACAGAAACAGGAACAAAATAA
CGAAGCTTAGCAAGTATACCATTTGCCATGCCAAGTTCTTTTGCTAGATG
GTCAAAATGAGAGTTCCAGGTTAGAAATTCATCGAGAAATAGCCCAAGGT
GTTTTACGCAAGTTGAGAGTTTAAGTTCGAAGTCATCGAGCTTTAACTTC
ATTGAATAGGGAACGGGCTTAAATGTCTGCTACGGAAGAGCAACACTTCT
GTTTTCAATACATTGAGTGAGATTTTATTCGCTCGGAGCCAAGAGGAGAG
TCGTGCAAGGTCAGAATTGACTTTGGTTTCTAGAGACTGAAGGTCAGAAT
CAGAGGAGAGGAGACAggtatcatcagcaaaaagATTCGTTTGACTATTT
TGAAGAACATAATGAAGATCATTAATATAGATGAGAAAGAGAATAGGTCC
AAGGACAGATCCTTGAGGGACTCCGTGATTAACAGGGCGTTTAAAAGAGT
CCACGCCAGAAACAGAGACGTATTGTTGTCGGTCTGTAAGATATGAACGA
AACCATTGATTAGATAAACCCCTCACACCATAATGTTTAAGTTTAGACAG
TAGTATTTCATGGTCGACCGTGTCAAAAGCTTTTTGCAAGTCGATGAATA
CCCCGCAAGAGTAAAGTCCTTTGTCTATGTTNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCAAGAA
AAGAGACTAAtctaaattttattattttttcgaataTCTTATCGATGTTT
GATAGTAGAGATATTGGGCGATAATTATTAACATCATGAGCGGAGCCCTT
ATGTTTAAAAATTGGAATTACTTTAGCCGTCTTGAGAGGAGTGAAGAATT
TACCTGTCTGTAGCGAGTTATTGAAAAGCTTTGAGATGATTTCTGACACC
TCTGctaaaacagtttttaatactTTAGAGGGTATGCTATAAGGACCGTC
AGCTTTAGGTTTAAGATTCAAATTTAAGATTTAGGTTTAATCACGCACCC
CTTTGAAAATGtccaaatcacgtatcacggttcaaaattttttgaaagca
cgatcacgttttgatcAGGAGGGAGCAGAatcacgaaaaaaaattgcaaa
tcacgtaatcacgctgcagaaaaaagtccctatcacgtcatcacgcaAAC
CGTTTGGGGGCCTCGGTTAGGAAATTTTACGAAATAAATTATTTCTCTAG
GGGTCACTTTTTCGCTAAAActtctctctaagggttacttTTCGGAGGTC
CAGTCCGCATATACTCGACATTCTCCAACCCCAGTACCCCCTACCGGAAA
ATGTACAGAATTTGCAAGTAAGCAGCTGACGTCATTATATATGGCGTGCT
TTACTTGCTTGATGTGAAATCGGCTCTAATGTATGTGTTTTAATAAGGTC
TTCTGATTTATTTTGGTTCAGAAAAACAATGAGGATAACGCAGTGAAGCT
GTTGGATGAGCTGGAAAAACAACGCTTAGAACTTGATGAATATCACGTCA
AAGAGACCAAACGACAGATGGACGCTCTTGAAACACTTCACCAAGGAGAA
TTAGCGGATTGCGAGAAAGACATTcaagaaaagaagaaggaaaacgAGGA
GTTGTCAGAAGAAATCGTGAAACTGAAAGGTGATTTAGGAGAGATGAAAC
ATTCTATGAGACTTGTTATGGAGACGTTTCGTGATTTCATCGAATCTTGT
GAAGGTTTTGGTGAAGGACAAGCAGACTTTGTACTGGATCATCTGATACc
ccaaaaaattgaagaatttctAAGAAATTAATCTCTTGGTGTTTCTTCGC
TCtgatttgaatttcaattattGAACGTGTGTTGTGTAAATAAAATGAGa
ctgactttttatttttttatatctgATAAATTTGACATACTGTACATAAC
CAAAGTATAATAAGTGTGATTTTACGAATAAATTAATGATCAAACcttat
tatttgatttttttaacatcTTAAGGCCCCTTCATCATCGATTGCACCAG
GAAAATCTCCTGCTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006279-exon-sc0000066-1491911889:742792..743183 | TCONS_00006279-exon-sc0000066-1491911889:742792..743183 | Clytia hemisphaerica | exon |
| TCONS_00006279-exon-sc0000066-1510915933:742792..743183 | TCONS_00006279-exon-sc0000066-1510915933:742792..743183 | Clytia hemisphaerica | exon |
| TCONS_00006279-exon-sc0000066-1575043694:742792..743183 | TCONS_00006279-exon-sc0000066-1575043694:742792..743183 | Clytia hemisphaerica | exon |
| TCONS_00006279-exon-sc0000066-1491911889:743895..744082 | TCONS_00006279-exon-sc0000066-1491911889:743895..744082 | Clytia hemisphaerica | exon |
| TCONS_00006279-exon-sc0000066-1510915933:743895..744082 | TCONS_00006279-exon-sc0000066-1510915933:743895..744082 | Clytia hemisphaerica | exon |
| TCONS_00006279-exon-sc0000066-1575043694:743895..744082 | TCONS_00006279-exon-sc0000066-1575043694:743895..744082 | Clytia hemisphaerica | exon |
| TCONS_00006279-exon-sc0000066-1491911889:744319..744591 | TCONS_00006279-exon-sc0000066-1491911889:744319..744591 | Clytia hemisphaerica | exon |
| TCONS_00006279-exon-sc0000066-1510915933:744319..744591 | TCONS_00006279-exon-sc0000066-1510915933:744319..744591 | Clytia hemisphaerica | exon |
| TCONS_00006279-exon-sc0000066-1575043694:744319..744591 | TCONS_00006279-exon-sc0000066-1575043694:744319..744591 | Clytia hemisphaerica | exon |
| TCONS_00006279-exon-sc0000066-1491911889:747863..748458 | TCONS_00006279-exon-sc0000066-1491911889:747863..748458 | Clytia hemisphaerica | exon |
| TCONS_00006279-exon-sc0000066-1510915933:747863..748458 | TCONS_00006279-exon-sc0000066-1510915933:747863..748458 | Clytia hemisphaerica | exon |
| TCONS_00006279-exon-sc0000066-1575043694:747863..748458 | TCONS_00006279-exon-sc0000066-1575043694:747863..748458 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000066 | supercontig | sc0000066:742792..748458 + |
Blast
The following BLAST results are available for this feature:
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