TCONS_00006268 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006268
Unique NameTCONS_00006268
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2875

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006268 ID=TCONS_00006268|Name=TCONS_00006268|organism=Clytia hemisphaerica|type=transcript|length=2875bp
GATTCTCCAGATACTCCTTCGCCACAATTGAAACGACGATCGACGCATTG
GTATCGCGTGGAAGATAAAGAAAGTTTGGAGTTTACCATCTCAAAGAGTC
CGTTCGACCATCGACGTTCTAAGAGTAGTTGCAATATCACAACTGTCAAC
ACAGCTGAAAGCACTCCACAGAAAGATGAGAAGCGTCAATCACGTCGCAT
GAGCGATACCATCTTGTCCGATAAACCAGCTCCCCATCACACTCATTCAC
CTTCCAAACGATTTATTCGTAAAATCTTTTCGCCGATGGTTTGCGGtgtg
ccgtcacccgaccgccGCNATTCACCTTCCAAACGATTTATTCGTAAAAT
CTTTTCACCGATGGTTTGCGGcgtgccgtcacccgaccgccGTCACCTTT
TCACCAACAATGGTTCGCTACTCAGTCTCGGTTCGTACGATTCGGCTTCC
GTAATCTCCGACCACGAACAAGACGCGTATCCGCAACTCTTCGATTTCGG
ATCACACGAACTCATGGAAGAAATGACGTTGATTGATAAAGAACTTCTTG
TCAGGATTCCGTGGGGTGAACTCTCAATACTGGGATGgatgtccactgat
aagTACATCATTGCACCGAACATTATGAAGATGGTGGAATTCTTCAATCG
AGTTGTGATGATGGTCACCACAAGTATTCTCTCCGAAGAAAATGTCTACA
GAAGAGCGAAAATCATTCAGAAAGCCATCAAGTTGGCTTTGAAATTTCGA
TACCAGAAGAACTTTAATTCTTTGAAAGCAGTCTTGGGAGGTTTGCAATG
CACTCCAATCTTTCGACTGAAACAGACATGGAAACAAGTACCCTCTAGAT
ATAGAAGAGTGTTTCGTGAATTGTCCGAACTAATGAGCGAAGAAAACAAC
TTTTACAATTACCGCATGGTGCTACGTGAATCGATGGAGAAACCACCCTG
TATTCCGTTCCTTGGAAACTTCTTGACAACGGTTGCACATACACACGCTT
TTGTTTCCGTTAATTATAAGTACAAGAAAGACTCCGCGATTGAGAGCGGA
GGAGAGAGTGATAGTAACCGAACTTCGCCCTCCCCAACGAGTTCACCTCA
TGAAGGTGAAGATGAAAGCTCGAATAAAAATTCAGAATTAGATAAACAAA
TAGACCCTTGTCTGAGGAGCTCCACTTCAAAGATCCATTCAGCGAGCCAC
ATGAGAACGGATTCGGATGATAGCGGTGTCGTGTTAAATGTTCATAGGTT
AAGTCGATCCTCAGATGATTTGGAAACTAGCCCAAGGGAGGAGAGCCTTA
GCTCACCTGATGATGATGGGAGAGTACGTTTTCATGAAGAAGTTTTCGAT
AAAAAGAATTCCCAACAAGAAGATGAAGAATGTTTTTGCCCGTCTAatca
agaaactgaaaaagCGAAAAAACCACGATTCTCAGATACTGATTTACCAT
CAACCACAACCACGTCCTCGACCCCAAATCCGACGCGAACGCAACTTTCA
GTGTGTCCCCGACACCGACGCAGCGTCAGTGAAATTATCATGTCACCGAC
CAGACATCACAGTCGTAGCATAAGCGATGCTGGCATACGTAACGCAAATG
ATATAAACAATGTTATAAATAATAGACCGGTTGCCGGCAAAGAAAACAGC
GGACTTTATACTTGTGAATTGCAATTCTGGAAGTACCAAATAAATGCAGT
GCAATACAAAATCATACCTAAATCATACATACGTCGCTATTTAATGAACT
GTCCCTATAACACGGAAGAGGAAAATTATAAACTATCATTAAAACGTGAA
CCACCTGCGCCAAGGTgaataagtacatattttttaaaCGAATTTTAACC
AATTTTTGGATACCAGCCAGCtatgtaaaatttttattattatgaATTCT
ATAGACGTAGTATTCTTAGATTTTTGAGGCCTTTTAAATTGCTGATCTTT
TTTTTCCGCAAGGTATCACATTATTCTTTTACTGCTTTAGgtttaaaatt
tcttctttttctttttttaaattttctttttgagatttttttgatattat
tgagaattaatatttttgttttggttttattCTTATctctttgtttttga
tatttttattatttgttttCTTTGTAGTTTAACCTCAGCTTTATTTCACT
CAACTTCATTTAGATCCTTCACTTGTCATCGTAGGTCCGATCGGATCAAT
TCTCTTGACAATTTATGCACTCCATCTGTTTccaggcacgacgcaacggg
tatGGCAggtaccagattttcacaaaaaaaccctgaaatttccctcttcg
tcggtaaaatcgctaaaaattgCTTAAATTTTCTCATTCGTAGATATAAA
AAGAATCCGTCGTTCCTGGTTTCTGTACACCCCAAGTGGATTAGTTTTTA
TTTGGTGTTTGTTTTACTTCGTAAGTGAAAAGTATTTTTTGCGGGAAAAA
ATatggtaccttatcggggaaaacttcgttggggaaaagtgacgacattt
tggccaagtgatgaatatttttccccgacgaaatNCGGGGAAAACTTCGT
ttgggaaaagtgacgaaattttggccaagtgacgaatatttttccccgat
gaaaattttcgacgaagttttccccgataaggtacatcTTATTACCGTCA
AAATAGATTCTTTCTGTTTCATATCCTATTTGTCGttctagaaattttta
tttaagaTTCAACAGTACATattattatttaaaatttttgctgttaTTTT
TTTCCTTTGCCTTAACTGATGGCAACTTTGGTGTAAATTAGAAGCATAAC
AAACTGTATTTTTGTATATAATTTAGGCGAAAACTAAGAAAAATAtctat
aaattttcaaaactagaaaatgaaa
Run BLAST on NCBI

transcript from alignment at sc0000066:390020..398158+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006268 ID=TCONS_00006268|Name=TCONS_00006268|organism=Clytia hemisphaerica|type=transcript|length=8139bp|location=Sequence derived from alignment at sc0000066:390020..398158+ (Clytia hemisphaerica)
GATTCTCCAGATACTCCTTCGCCACAATTGAAACGACGATCGACGCATTG
GTATCGCGTGGAAGGTGAGAATCAAACCAATAAGGTATAGCTGACGGCAA
ATCTTCACCTTTTTCCATTCTCGAGCGCCAAAAGGTATTGATGATATAAG
AATTGCACCGCATTTCGGATGATGGATTGAATCCAACGCTTTCTTTGATA
ATTGTGTGTCTCATCCTTCGAGATTAGTTGTAATGGTTACTTTTAATCCa
gcaatttttttggaaatcacaCGACCACGCAATTTATCTAGGGTCATAGG
TGTCCATACTAGAAGATATTATTTCTATTCTTGCAAATAGACAAAAAGTT
TAGTTCTGCCGAAAAAGCCGAAAAATTTTGTGTGAAGTGCAATTCTATTT
TTTCTGTAGGATTTTACGCTGCTTCTCGAAATCAAGGATAACCGTAAGAA
TATTTGGTTAGGTTTCATAGGTTTCCGATCAATCCTTAGTTACAATTTTT
AACTGATTCCGATTTTAATATGATTTATTTAAAACAATAGTAAACAAAAT
TCTAAACATTCTTTGATTGTTCTGACTTTTGTTAGTGATCGTATAATTCT
CATGATAATCAAGTTTACTTGGTAAATACTCAAAGTTGCGtgacttttat
aagaacagccttgaattcttttttgaattctttaTTGGTCCTGATTTTCT
TTTCTGGTGAAGAGCTACTGGCTGGGTGGTAACCTTGGTGAGAGTTGTGA
TCTTTTTGGTTTCGATAACCTACCCttgtcatttgatttgaaaatactGG
CCGTAGAATTATACGTGCATGCTTTTGAAGAACAGTGTTTTTTGCCACAT
TATGTGATACGTCGTAAGTGTAGCGATTCTCCACTtgcgtaaaatatttt
tcacttccCAACTCAAACTTATGTAATGTGCTGTAATCGCAACCTTCAAC
CTTATGCTTCACCTTgaccaaaaaaaatattatcttttttaagaaccaga
aaacttttttgatgctTAGCTATTCTTTTTCTTGCCACTTTGAACCTTAC
GTGaaccttaaattgttcttattttcagggGAAAAAATGAGTTATTTGAG
ACTTTGTAATATTTCTAATGTCCTTGACATTCACTCATTTCAGACTAACG
TTTGTTCATAAATTGATCTCATTTATCTATCGTGTTTGAGCTTcattctt
tgttcttataaaatagttCTAATAAGAAACAtattccttaaaaatgaaga
atcAGTAAAAAATATGGCACGAAAGCAAAATTTGGGTTTAATCCCACTGA
ATAACaatcatcaaatattttttagagTTTCGATGGTTTTTTTTGTGACC
TTTCTTGATATCTTTTCGTATTTTAGGGGGGAATTGAATAATTTTAGGCG
TTTCACCACCCTAGTTCTACTCTTTTAATCCTTAATTTGGTTGTGCTTTT
CCAACTCAGTGTTTCTCTCAAACTATACgctttttttataggaataatct
gagcctcagatttcggAAATTACTAACAAggtactgattttaacagattt
taaacccGTTTTAACTATTAAGTGAAGCAACtaagcgtattaagaacatA
GTAAAAACATTtgatcctgaaaatttcaaaaaattaaagaacagCCCagt
ctgagccaaaatttactggttcttataaaaaagcgtttattcttaaaaaa
agagtgtactgGAAATTTTCTACTGGGCGTTGTTTCAAGTTTGACCTTTT
GCAGTAGATTTCGTTTCATTCCGttgttttatttgaaaacacAACGGTTC
GTGAAGGTATGAATACTTGCTCCCATTTCattgacatcaatttttgtaTC
CAAAATAAAGTATCAAGTTTCATAACATCAAGCTTCCTGTTTTATCTAAA
CTTGTTAACAGGCATCATAAAGTTGGAACAAGTTTAGAAATATGTCTTGA
GGTGTATTTTGGGTGGACATCTTTACAGATCTTTAATGAAATTATCGTAA
ATAATAGATCATGATCATGGATTGGTCAGTTTTATGCAGTTGAGACTACA
AAAATACTCGCGAAAGCTTATCGAGTTGTACAGAGAAAGTATACTTTTGG
ACAAAGTATAGCCTTAGTTTGTTTTATGGGGTTGGAAGGATTGTTTCAAA
TGTTATACAACCGGATCTTGACATACACGTTTttcaagaacaaactattt
aagaacatacGGCTTTGATGgcgaaaatattaagaacaagcttaGAACAT
TTTGAAACTTAACGGACTCTAAAAAATATCCAATTTCTTGGAAATAAACC
AAAATACTTACAAACCCGTCTagatgagaacattttaagaacatatatag
gctttaaactcaaaagctaagaacatctgaaTGTTCTGGatgttttataa
aaaacgtgtattataaTACTTGACAtattaaatttcatcataaacTCATT
GCATCCGTCTCTTCTTCATTTTGCCACTATGATTGCCAGTAATGAGCCAA
GTNTAAACTCATTGCACCCGTCTCTTCTTCACTATGATTGCCAGTAATGA
GCCAAGGATTAATTATAAATGGCCAGCAAACTTTTCCGGACGCCTCGTTA
AGGATTATTAGTTGTCATGGTGATAAACGGGATTAAGTATCTGCTTCCTC
CTTAAGTTTTACGTTGATTGGGTTTATTATCTCTAGGTGCGCGTTGTGTG
TTTACTGTTTACTCAAGGTAGCGATTGATTTGTTACGCTCTTCCCTTATT
GCTTAATGGCAAGCAACTGCATCTTTTCACACTAGCGTTTTAGAACGCAT
TTTTGTTATGCTTTATCTTTATCTATTTTTTGGAGGTCATGAAATTCGAC
TTGTttacaatttgattttttcgttGTTTTGTCAAGTTGCTTTCAAAATA
AGATGTCACAACTAGATTTTCTGTCGCTTGAGTTCGTGAtaaaaagtttt
cttcaaagaagtaagAATAGACTTCGATTATTTTGGAAAGCCATTTATGT
CCACCTTACTTCGTTAAGGCATAATAGGCAGTTAATGCAGTAGTTTGTTA
TTATTTATTTGCCAACTACAAAGTAAAATATAGTGGTAGTTCAAGTGTAt
aagcattttttataagaagcagCAGATTTTTCTCTAATgatcttattttc
cattttctatGCTTCTACGGCTAcacggtttttttttttataaggaacct
tagctttgctctgagcctggagttccttatttttacagaaaatttcagcc
tcaaagttccttatgagttccttatttacatagctgctaagttttgataa
ccatctcttactgttccttaaagcttgatttcttattctcagcctgagca
gttccttaacaatttcttattttttggaccattttcagcctcgagttcct
tataaacgtgttccttatataaaaaaaaacgtgtatatgagTAGGTTTCA
GGAAAATATTAGCTTTGCAAACTTCTGAATATTAATCCTCATTTTTTTCT
ATCAACCTTCAGATAAAGAAAGTTTGGAGTTTACCATCTCAAAGAGTCCG
TTCGACCATCGACGTTCTAAGAGTAGTTGCAATATCACAACTGTCAACAC
AGCTGAAAGCACTCCACAGAAAGATGAGAAGCGTCAATCACGTCGCATGA
GCGATACCATCTTGTCCGATAAACCAGCTCCCCATCACAGTAAGTGTCCG
ACAAAATAATAATCAATTTGAATACTTCTGTTAGTGCCAAAACGACAAAA
CGGTTCTTTCCTCTAGAGTCATTTTTCGTTCTAGGTTTCTCTTtgtaatt
caaattttgactgCTTGTTCatgatttttcattcaaaaaatattaagaac
agtgGGAGGCTTTCGATTTTGAAGTAGATTTTTAATTGGTCTAGTTATTC
TACACTGATAATTGCTTTTGATTATCCGATTACTGGGACCAGTCAACCAG
caaataaattttgtaattGATTCTTCACGTGGTCCTTTTCATTTTACCTC
AACTAaatttttacacgtttttttatacaagaacaaactatataagaaca
taaggcttcgatggccaaaatattaagaacaaattaagaacattttaagg
ctttacagacacaaaatggccatatttcttaagaaaatggacaaaaatgc
tcacaaaatcttcaaaataagaacacgtgAAGAAcagttttaggcttaaa
actcaaaaagttaagaacatcccaagacttctaaacttttggatgttctt
ataaaaaaacgtgtaatagcATTCTCTATGGTTACTAAGAAGATGTGTTA
TCTCAGTAGCGTAGAAATGtcttgaaatttcatttttcactaTTCATTGA
TTGCTATATTTCTTTTGTCGAGACATTCATTTGTACAGACGTCATTTTAA
ATGGTCGCGTAATTAATTTCTCAATAATTTGTTTGATTCCTGTGGGTCCT
GGTTTCAAACGGTTTGGGGAGTTGCCAGGTTAAACCTTATATATTGTTAT
TGAACATGTAAAAAGATAGAACAAAAATGTTTCGCCCACGTGGAGGAAAG
ATATAAGGAACAACTCAATTTCAGATGAAATAGATTTTGTTGTGTATCTT
TTGAATATTGATTGATCAAGATTTGGACTTTCCTCTGAAAATAACATGTT
AGTAACATTGTAACATGAGCATGATGTGACTAAGATCTTTCACGGCTCTC
TTTATTTCTGACcattaacattttcttttttccttacAGCTCATTCACCT
TCCAAACGATTTATTCGTAAAATCTTTTCGCCGATGGTTTGCGGtgtgcc
gtcacccgaccgccGCNATTCACCTTCCAAACGATTTATTCGTAAAATCT
TTTCACCGATGGTTTGCGGcgtgccgtcacccgaccgccGTCACCTTTTC
ACCAACAATGGTTCGCTACTCAGTCTCGGTTCGTACGATTCGGCTTCCGT
AATCTCCGACCACGAACAAGACGCGTATCCGCAACTCTTCGATTTCGGAT
CACACGAACTCATGGAAGAAATGACGTTGATTGATAAAGAACTTCTTGTC
AGGATTCCGTGGGGTGAACTCTCAATACTGGGATGgatgtccactgataa
ggtactAGAAATAAGGGTTTATCGAAAATCTATCGGAGAAATGTAATTTA
TTTAAACTAAGTTTTTTTAACAGAAGATTTTTTTCTAAGGTTGGAACGTC
CAAACAGGGGACTCTTCATCATTAACTTATATGACTAGGATCTCTTGGTA
AAGCAGCAGACTTTTTTCCACTGCCCATGGCTTCCTTTTGAGGGTTTTTC
gattaagtctaaaaatgttcttattggATTTCAGTTTTGGTGCGATCTGC
TGAAAAAAGTCCACTGAGCCTTAAATATTCTTAGAATGTTAAAATTTAGT
CTTTATTCATAAATTTGTCCAAATCTTTTCGGTTCAGTACATCATTGCAC
CGAACATTATGAAGATGGTGGAATTCTTCAATCGAGTTGTGATGATGGTC
ACCACAAGTATTCTCTCCGAAGAAAATGTCTACAGAAGAGCGAAAATCAT
TCAGAAAGCCATCAAGGTGAGTGCTTATGTATGTACCAGTTACAGTCGAC
TTTCAATAGTTTGAACCTCTTATAATATTAGTACCTTTAAAAGAATCTTG
GACTTTCCATCTTGTACTTCATTTCAATTCATCTATACGTTAACCAGCTC
TCTTGACTTGTATATTTTCGCTTAATTCATGAATTTAACTGCATCTTTTA
TCGGCTACCATCTTCGATAAAATACTGCGATTCTATGAAAAATGTTCTAC
TAACTGTCTTTCTTCTTCTAGTTGGCTTTGAAATTTCGATACCAGAAGAA
CTTTAATTCTTTGAAAGCAGTCTTGGGAGGTTTGCAATGCACTCCAATCT
TTCGACTGAAACAGACATGGAAACAAGTACCCTCTAGATATAGAAGGTAA
GCCATTTTTTGTGAtaggttttcttttttgaccCTTGAACTCCTTGGGAG
TTTTTGACAATTTGCGCTTTAAGTTTTTTATTAAACGGTTACTCGGGGCT
ATATGTACCAAATGGTCGAAATCGACTTTTCTGTCTACAAACATCTTTAt
tatttctttattattttccAGAGTGTTTCGTGAATTGTCCGAACTAATGA
GCGAAGAAAACAACTTTTACAATTACCGCATGGTGCTACGTGAATCGATG
GAGAAACCACCCTGTATTCCGTTCCTTGGAAACTTCTTGACAACGGTTGC
ACATACACACGCTTTTGTTTCCGTTAATTATAAGTACAAGAAAGACTCCG
CGATTGAGAGCGGAGGAGAGAGTGATAGTAACCGAACTTCGCCCTCCCCA
ACGAGTTCACCTCATGAAGGTGAAGATGAAAGCTCGAATAAAAATTCAGA
ATTAGATAAACAAATAGACCCTTGTCTGAGGAGCTCCACTTCAAAGATCC
ATTCAGCGAGCCACATGAGAACGGATTCGGATGATAGCGGTGTCGTGTTA
AATGTTCATAGGTTAAGTCGATCCTCAGATGATTTGGAAACTAGCCCAAG
GGAGGAGAGCCTTAGCTCACCTGATGATGATGGGAGAGTACGTTTTCATG
AAGAAGTTTTCGATAAAAAGAATTCCCAACAAGAAGATGAAGAATGTTTT
TGCCCGTCTAatcaagaaactgaaaaagCGAAAAAACCACGATTCTCAGA
TACTGATTTACCATCAACCACAACCACGTCCTCGACCCCAAATCCGACGC
GAACGCAACTTTCAGTGTGTCCCCGACACCGACGCAGCGTCAGTGAAATT
ATCATGTCACCGACCAGACATCACAGTCGTAGCATAAGCGATGCTGGCAT
ACGTAACGCAAATGATATAAACAATGTTATAAATAATAGACCGGTTGCCG
GCAAAGAAAACAGCGGACTTTATACTTGTGAATTGCAATTCTGGAAGTAC
CAAATAAATGCAGTGCAATACAAAATCATACCTAAATCATACATACGTCG
CTATTTAATGAACTGTCCCTATAACACGGAAGAGGAAAATTATAAACTAT
CATTAAAACGTGAACCACCTGCGCCAAGGTgaataagtacatatttttta
aaCGAATTTTAACCAATTTTTGGATACCAGCCAGCtatgtaaaattttta
ttattatgaATTCTATAGACGTAGTATTCTTAGATTTTTGAGGCCTTTTA
AATTGCTGATCTTTTTTTTCCGCAAGGTATCACATTATTCTTTTACTGCT
TTAGgtttaaaatttcttctttttctttttttaaattttctttttgagat
ttttttgatattattgagaattaatatttttgttttggttttattCTTAT
ctctttgtttttgatatttttattatttgttttCTTTGTAGTTTAACCTC
AGCTTTATTTCACTCAACTTCATTTAGATCCTTCACTTGTCATCGTAGGT
CCGATCGGATCAATTCTCTTGACAATTTATGCACTCCATCTGTTTccagg
cacgacgcaacgggtatGGCAggtaccagattttcacaaaaaaaccctga
aatttccctcttcgtcggtaaaatcgctaaaaattgCTTAAATTTTCTCA
TTCGTAGATATAAAAAGAATCCGTCGTTCCTGGTTTCTGTACACCCCAAG
TGGATTAGTTTTTATTTGGTGTTTGTTTTACTTCGTAAGTGAAAAGTATT
TTTTGCGGGAAAAAATatggtaccttatcggggaaaacttcgttggggaa
aagtgacgacattttggccaagtgatgaatatttttccccgacgaaatNC
GGGGAAAACTTCGTttgggaaaagtgacgaaattttggccaagtgacgaa
tatttttccccgatgaaaattttcgacgaagttttccccgataaggtaca
tcTTATTACCGTCAAAATAGATTCTTTCTGTTTCATATCCTATTTGTCGt
tctagaaatttttatttaagaTTCAACAGTACATattattatttaaaatt
tttgctgttaTTTTTTTCCTTTGCCTTAACTGATGGCAACTTTGGTGTAA
ATTAGAAGCATAACAAACTGTATTTTTGTATATAATTTAGGCGAAAACTA
AGAAAAATAtctataaattttcaaaactagaaaatgaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003580XLOC_003580Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006268-exon-sc0000066-1491911889:390020..390083TCONS_00006268-exon-sc0000066-1491911889:390020..390083Clytia hemisphaericaexon
TCONS_00006268-exon-sc0000066-1510915933:390020..390083TCONS_00006268-exon-sc0000066-1510915933:390020..390083Clytia hemisphaericaexon
TCONS_00006268-exon-sc0000066-1575043694:390020..390083TCONS_00006268-exon-sc0000066-1575043694:390020..390083Clytia hemisphaericaexon
TCONS_00006268-exon-sc0000066-1491911889:393532..393708TCONS_00006268-exon-sc0000066-1491911889:393532..393708Clytia hemisphaericaexon
TCONS_00006268-exon-sc0000066-1510915933:393532..393708TCONS_00006268-exon-sc0000066-1510915933:393532..393708Clytia hemisphaericaexon
TCONS_00006268-exon-sc0000066-1575043694:393532..393708TCONS_00006268-exon-sc0000066-1575043694:393532..393708Clytia hemisphaericaexon
TCONS_00006268-exon-sc0000066-1491911889:394759..395120TCONS_00006268-exon-sc0000066-1491911889:394759..395120Clytia hemisphaericaexon
TCONS_00006268-exon-sc0000066-1510915933:394759..395120TCONS_00006268-exon-sc0000066-1510915933:394759..395120Clytia hemisphaericaexon
TCONS_00006268-exon-sc0000066-1575043694:394759..395120TCONS_00006268-exon-sc0000066-1575043694:394759..395120Clytia hemisphaericaexon
TCONS_00006268-exon-sc0000066-1491911889:395457..395585TCONS_00006268-exon-sc0000066-1491911889:395457..395585Clytia hemisphaericaexon
TCONS_00006268-exon-sc0000066-1510915933:395457..395585TCONS_00006268-exon-sc0000066-1510915933:395457..395585Clytia hemisphaericaexon
TCONS_00006268-exon-sc0000066-1575043694:395457..395585TCONS_00006268-exon-sc0000066-1575043694:395457..395585Clytia hemisphaericaexon
TCONS_00006268-exon-sc0000066-1491911889:395841..395965TCONS_00006268-exon-sc0000066-1491911889:395841..395965Clytia hemisphaericaexon
TCONS_00006268-exon-sc0000066-1510915933:395841..395965TCONS_00006268-exon-sc0000066-1510915933:395841..395965Clytia hemisphaericaexon
TCONS_00006268-exon-sc0000066-1575043694:395841..395965TCONS_00006268-exon-sc0000066-1575043694:395841..395965Clytia hemisphaericaexon
TCONS_00006268-exon-sc0000066-1491911889:396141..398158TCONS_00006268-exon-sc0000066-1491911889:396141..398158Clytia hemisphaericaexon
TCONS_00006268-exon-sc0000066-1510915933:396141..398158TCONS_00006268-exon-sc0000066-1510915933:396141..398158Clytia hemisphaericaexon
TCONS_00006268-exon-sc0000066-1575043694:396141..398158TCONS_00006268-exon-sc0000066-1575043694:396141..398158Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000066supercontigsc0000066:390020..398158 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.3496	0	0	0	13.3561	11.2034	9.74631	5.94003	8.64673	20.8991	11.4773	16.8802	3.01662	3.69735	0.0318244	0.258559	4.44623	2.18614	2.85173	5.8429	2.38963	1.43384	1.05602	0.488161	0.1783	4.75195e-05	0.351443	0.840773	0.33415	1.81304
Blast
[Close]
BLAST of TCONS_00006268 vs. Swiss-Prot (Human)
Match: RGRF1 (Ras-specific guanine nucleotide-releasing factor 1 OS=Homo sapiens GN=RASGRF1 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 6.691e-20
Identity = 52/160 (32.50%), Postives = 90/160 (56.25%), Query Frame = 1 
Query:  508 ELMEEMTLIDKELLVRIPWGELSILGWMSTDKYIIAPNIMKMVEFFNRVVMMVTTSILSEENVYRRXXXXXXXXXXXXXFRYQKNFNSLKAVLGGLQCTPIFRLKQTWKQVPSRYRRVFRELSELMSEENNFYNYRMVLRESMEKPPCIPFLGNFLTTVA 987
            E+ E++TL+D  +  +IP+ E    GWM  +K    P IMK  + FN +  ++ + I+  E++  R   I+K + +A   R   N+N++  +   +  + IFRLK+TW +V  + + +  +L +L+S E  F N R  L+     PPC+P+LG +LT +A
Sbjct: 1041 EIAEQLTLLDHLVFKKIPYEEFFGQGWMKLEKNERTPYIMKTTKHFNDISNLIASEIIRNEDINARVSAIEKWVAVADICRCLHNYNAVLEITSSMNRSAIFRLKKTWLKVSKQTKALIDKLQKLVSSEGRFKNLREALKNC--DPPCVPYLGMYLTDLA 1198
The following BLAST results are available for this feature:
BLAST of TCONS_00006268 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RGRF16.691e-2032.50Ras-specific guanine nucleotide-releasing factor 1... [more]
back to top