TCONS_00006267 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006267
Unique NameTCONS_00006267
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2988

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006267 ID=TCONS_00006267|Name=TCONS_00006267|organism=Clytia hemisphaerica|type=transcript|length=2988bp
GTTTAGTTCCGGAAAGTCGATTAGCTGCGACACTTTAAGTCACTCATTGA
TGCACGTTGGGATTCACTATCAAGCTGGCTTTCTTGTCATTGTAACGGGT
CGCAATGGTTTTATCTTGCGGTATAAAGCCTATTCATTTATGGTGTCACG
GCAAAACGGGATCAGTTTTATTATCAGATAAAGAAAGTTTGGAGTTTACC
ATCTCAAAGAGTCCGTTCGACCATCGACGTTCTAAGAGTAGTTGCAATAT
CACAACTGTCAACACAGCTGAAAGCACTCCACAGAAAGATGAGAAGCGTC
AATCACGTCGCATGAGCGATACCATCTTGTCCGATAAACCAGCTCCCCAT
CACACTCATTCACCTTCCAAACGATTTATTCGTAAAATCTTTTCGCCGAT
GGTTTGCGGtgtgccgtcacccgaccgccGCNATTCACCTTCCAAACGAT
TTATTCGTAAAATCTTTTCACCGATGGTTTGCGGcgtgccgtcacccgac
cgccGTCACCTTTTCACCAACAATGGTTCGCTACTCAGTCTCGGTTCGTA
CGATTCGGCTTCCGTAATCTCCGACCACGAACAAGACGCGTATCCGCAAC
TCTTCGATTTCGGATCACACGAACTCATGGAAGAAATGACGTTGATTGAT
AAAGAACTTCTTGTCAGGATTCCGTGGGGTGAACTCTCAATACTGGGATG
gatgtccactgataagTACATCATTGCACCGAACATTATGAAGATGGTGG
AATTCTTCAATCGAGTTGTGATGATGGTCACCACAAGTATTCTCTCCGAA
GAAAATGTCTACAGAAGAGCGAAAATCATTCAGAAAGCCATCAAGTTGGC
TTTGAAATTTCGATACCAGAAGAACTTTAATTCTTTGAAAGCAGTCTTGG
GAGGTTTGCAATGCACTCCAATCTTTCGACTGAAACAGACATGGAAACAA
GTACCCTCTAGATATAGAAGAGTGTTTCGTGAATTGTCCGAACTAATGAG
CGAAGAAAACAACTTTTACAATTACCGCATGGTGCTACGTGAATCGATGG
AGAAACCACCCTGTATTCCGTTCCTTGGAAACTTCTTGACAACGGTTGCA
CATACACACGCTTTTGTTTCCGTTAATTATAAGTACAAGAAAGACTCCGC
GATTGAGAGCGGAGGAGAGAGTGATAGTAACCGAACTTCGCCCTCCCCAA
CGAGTTCACCTCATGAAGGTGAAGATGAAAGCTCGAATAAAAATTCAGAA
TTAGATAAACAAATAGACCCTTGTCTGAGGAGCTCCACTTCAAAGATCCA
TTCAGCGAGCCACATGAGAACGGATTCGGATGATAGCGGTGTCGTGTTAA
ATGTTCATAGGTTAAGTCGATCCTCAGATGATTTGGAAACTAGCCCAAGG
GAGGAGAGCCTTAGCTCACCTGATGATGATGGGAGAGTACGTTTTCATGA
AGAAGTTTTCGATAAAAAGAATTCCCAACAAGAAGATGAAGAATGTTTTT
GCCCGTCTAatcaagaaactgaaaaagCGAAAAAACCACGATTCTCAGAT
ACTGATTTACCATCAACCACAACCACGTCCTCGACCCCAAATCCGACGCG
AACGCAACTTTCAGTGTGTCCCCGACACCGACGCAGCGTCAGTGAAATTA
TCATGTCACCGACCAGACATCACAGTCGTAGCATAAGCGATGCTGGCATA
CGTAACGCAAATGATATAAACAATGTTATAAATAATAGACCGGTTGCCGG
CAAAGAAAACAGCGGACTTTATACTTGTGAATTGCAATTCTGGAAGTACC
AAATAAATGCAGTGCAATACAAAATCATACCTAAATCATACATACGTCGC
TATTTAATGAACTGTCCCTATAACACGGAAGAGGAAAATTATAAACTATC
ATTAAAACGTGAACCACCTGCGCCAAGGTgaataagtacatattttttaa
aCGAATTTTAACCAATTTTTGGATACCAGCCAGCtatgtaaaatttttat
tattatgaATTCTATAGACGTAGTATTCTTAGATTTTTGAGGCCTTTTAA
ATTGCTGATCTTTTTTTTCCGCAAGGTATCACATTATTCTTTTACTGCTT
TAGgtttaaaatttcttctttttctttttttaaattttctttttgagatt
tttttgatattattgagaattaatatttttgttttggttttattCTTATc
tctttgtttttgatatttttattatttgttttCTTTGTAGTTTAACCTCA
GCTTTATTTCACTCAACTTCATTTAGATCCTTCACTTGTCATCGTAGGTC
CGATCGGATCAATTCTCTTGACAATTTATGCACTCCATCTGTTTccaggc
acgacgcaacgggtatGGCAggtaccagattttcacaaaaaaaccctgaa
atttccctcttcgtcggtaaaatcgctaaaaattgCTTAAATTTTCTCAT
TCGTAGATATAAAAAGAATCCGTCGTTCCTGGTTTCTGTACACCCCAAGT
GGATTAGTTTTTATTTGGTGTTTGTTTTACTTCGTAAGTGAAAAGTATTT
TTTGCGGGAAAAAATatggtaccttatcggggaaaacttcgttggggaaa
agtgacgacattttggccaagtgatgaatatttttccccgacgaaatNCG
GGGAAAACTTCGTttgggaaaagtgacgaaattttggccaagtgacgaat
atttttccccgatgaaaattttcgacgaagttttccccgataaggtacat
cTTATTACCGTCAAAATAGATTCTTTCTGTTTCATATCCTATTTGTCGtt
ctagaaatttttatttaagaTTCAACAGTACATattattatttaaaattt
ttgctgttaTTTTTTTCCTTTGCCTTAACTGATGGCAACTTTGGTGTAAA
TTAGAAGCATAACAAACTGTATTTTTGTATATAATTTAGGCGAAAACTAA
GAAAAATAtctataaattttcaaaactagaaaatgaaa
Run BLAST on NCBI

transcript from alignment at sc0000066:387034..398158+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006267 ID=TCONS_00006267|Name=TCONS_00006267|organism=Clytia hemisphaerica|type=transcript|length=11125bp|location=Sequence derived from alignment at sc0000066:387034..398158+ (Clytia hemisphaerica)
GTTTAGTTCCGGAAAGTCGATTAGCTGCGACACTTTAAGTCACTCATTGA
TGCACGTTGGGATTCACTATCAAGCTGGCTTTCTTGTCATTGTAACGGGT
CGCAATGGTTTTATCTTGCGGTATAAAGCCTATTCATTTATGGTGTCACG
GCAAAACGGGATCAGTTTTATTATCAGGTACTTTGGGTTTACTTTCATCC
TTCAAAGTGCAAGGCATTATTCTTCTTTAACATATTCATTCATCAATATG
CTTGGACCAATTACTTTCACTTAGAAAACTTATCAATCCCAATTGTAGTG
TTACATGTTACATTTCGTTCAATCTGCTAAACTATAAACAAAGAAATTCT
CCGACTGACCaatacacattttttcttttattagaaccaagtttataaga
acattgaggctgaatttcgtcgaaaaattaagaacatcgtaagaacatgc
ccagcctcagtttggaaaaaaatgacaagaaactacaatttttcctcttt
tcgagcagttttaaacaaacttaggaatggattttctaaatcgagagtca
aatattgtccaaattttactaatttcaagtgctctttattttgcatgata
ttgtcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNAACgcatctaagaacatttcaggctgaaaattgct
aaaaaaataagcacatccaggctcagccaaattttaggtgttctaataaa
aaaaaaaacgtgtaacaagGAAAGATTCCCATGTGCATTTTTGCCACTAG
TTCAATAGTTCCTAATTTTTTAATTGTCAACCACTGCGAACCAATTCAGT
TGGTTTTTACTAAAGCAAAGTGATTACCTCGCTGCCAGGACAAATATACC
CATAGATCCCCTAGCAACAATTATCTTCAGTCTAAAAAACAATGGAATAA
AATGTTGCCAATTAGTTCTACTATCAACACTGGgtttcctattcataaaa
gcCATATTGGCTTTTGTGAAAGGTCAttttaattagattttcatTGATAT
GTTTTCTCTTTTAATAGCACTTCCTATATTTAGTATGTCTTCATGTTGTT
ACAATTTTCGTTTGAATTATGTATCTTATGGTAGAATGTGGTATTTAGAC
TGTGATAATAACATTACTTCTTCAAACATCTCATGGAAATTTTACGATTA
ACCTTTTATTATTATGGTATGTAACATGTTCAATTATTTCATCATTTACT
TGcttaacttttcaaatttaattcttCTGTACCATGTTTATGAAGTAGTC
AGCCTGAAAATGCTCAGCGATATTCTTGATTCGAAGATTCAACATCTCTT
CTTGTCTGCAAAGGACGATTTGAAAATTAACtccttttttctctttttca
ctTTTGATAGTCAGAATTCAGTCTCATTTTCAACCAATTTCAACCAAGAA
GGTTCTATTTTTATCTTGAGTTGAGAAGCTTTTTGGATTTTCTTGTAAAC
CACCACAGTCGAGTGTTGAAAGAAAAGTGAGAAGTTATTGAACTTTTTGG
TTTTAAGAATGACAGACTTCAGTTTAGTTGTAATTTTTATGAAAACCCTC
TCTCGATTTCTTAGGTTGCTTAACTTGAAAAGTTCTGACGTGagagaatt
tcttttcaaaacataaCAGAATCAAGTGGGtgtgttgaaaaaatttcttc
catACTATTTTAGTTGCTAAGATTTTCTTGGGAGTAAAAGTAAAAGGTCA
TCTTTATAAAGTAAACTTAATCTCGACAACATGGGCGTGTGTAATTATTT
CATTGTAGCTGCATTTATGAGGTTACTACTGGTTTTGAAGAATAGATTGT
TACTGTTTGATTATTCACTTAATATGAAGAACGAAAANTTATGAGGTTAC
TGGTTTTGAAGAATAGATTGTTACTGTTTGATTATTCACTTTGTTATGAA
GAACGAAAATTTTGTAATCTTTATTTTTCCGACGTCGTTAATTGATCCAT
TTCTGACGTAATTATTATGACGGAGAAATGAGTCGTCGATAATTATTCAA
CTTTGAGCTTCCAAAACAGGAATTTTCTCAATTCCTCACTTGAGCTTGTT
GaaatttcaaaccaaaacaCATTCTTAGACTCCAGATGGGATTTATAAAG
GAATTAGTCAGTTTGTGTAATATTTAGAAGAAAAACATCTGAGCCAAGTC
GTCGATTGGCTTTGTAGGATCTTTcggaagatttttttttttattcaagg
tGACTTTTTATTGTGTCAATAACATTATGTGTTCGGTTGTTTTTACGTCG
ATTAAAACGTGATATCTTTGGTCAGTTTGTTGGACTACTAgtgtgtctga
aaaaaatattcggAAATTATTCTCAAATTATGAAATACGATAGTTTGGCA
AGGTGCATTTGAAGACAATGGTTTTAAGTTTAAAATTACGTTCTATAATT
GATTCGATACATAACTTTGAACTTGCTGGAAAACCTTTGTTACCTTATTT
TAGAGATTAACAACTGAAGATTGGACCTCATTTTCTCTCCCTCTttaagt
tctttttttttcacctgAAGTATTCTTAGTGAATTCGAAACTAAAGGGTT
TTCAAAATAGTCTGCGTGGGTTGGAAGAAAGTGACATTTTCTGTGGTAGA
AACTTTTCACACCGAGAAAAGGGCTAAACATGGTCCTATTAAATTAGAGA
TAAATTGATAGGAACAACAAGGAATATTATTGTGATAAAAGTCGGTTGAA
CTAATCTTCAAagtaaaattagtaaaaaagaaatatgaagGAGAACCAAT
TGCAGAAGAGTTATGAGATGTACCAGCCACAGTGTATACCATACATCAGA
ATATGTAGTGGTGATGATGAGCTTCCTGGTGAAGTTGATTCTCCAGATAC
TCCTTCGCCACAATTGAAACGACGATCGACGCATTGGTATCGCGTGGAAG
GTGAGAATCAAACCAATAAGGTATAGCTGACGGCAAATCTTCACCTTTTT
CCATTCTCGAGCGCCAAAAGGTATTGATGATATAAGAATTGCACCGCATT
TCGGATGATGGATTGAATCCAACGCTTTCTTTGATAATTGTGTGTCTCAT
CCTTCGAGATTAGTTGTAATGGTTACTTTTAATCCagcaatttttttgga
aatcacaCGACCACGCAATTTATCTAGGGTCATAGGTGTCCATACTAGAA
GATATTATTTCTATTCTTGCAAATAGACAAAAAGTTTAGTTCTGCCGAAA
AAGCCGAAAAATTTTGTGTGAAGTGCAATTCTATTTTTTCTGTAGGATTT
TACGCTGCTTCTCGAAATCAAGGATAACCGTAAGAATATTTGGTTAGGTT
TCATAGGTTTCCGATCAATCCTTAGTTACAATTTTTAACTGATTCCGATT
TTAATATGATTTATTTAAAACAATAGTAAACAAAATTCTAAACATTCTTT
GATTGTTCTGACTTTTGTTAGTGATCGTATAATTCTCATGATAATCAAGT
TTACTTGGTAAATACTCAAAGTTGCGtgacttttataagaacagccttga
attcttttttgaattctttaTTGGTCCTGATTTTCTTTTCTGGTGAAGAG
CTACTGGCTGGGTGGTAACCTTGGTGAGAGTTGTGATCTTTTTGGTTTCG
ATAACCTACCCttgtcatttgatttgaaaatactGGCCGTAGAATTATAC
GTGCATGCTTTTGAAGAACAGTGTTTTTTGCCACATTATGTGATACGTCG
TAAGTGTAGCGATTCTCCACTtgcgtaaaatatttttcacttccCAACTC
AAACTTATGTAATGTGCTGTAATCGCAACCTTCAACCTTATGCTTCACCT
Tgaccaaaaaaaatattatcttttttaagaaccagaaaacttttttgatg
ctTAGCTATTCTTTTTCTTGCCACTTTGAACCTTACGTGaaccttaaatt
gttcttattttcagggGAAAAAATGAGTTATTTGAGACTTTGTAATATTT
CTAATGTCCTTGACATTCACTCATTTCAGACTAACGTTTGTTCATAAATT
GATCTCATTTATCTATCGTGTTTGAGCTTcattctttgttcttataaaat
agttCTAATAAGAAACAtattccttaaaaatgaagaatcAGTAAAAAATA
TGGCACGAAAGCAAAATTTGGGTTTAATCCCACTGAATAACaatcatcaa
atattttttagagTTTCGATGGTTTTTTTTGTGACCTTTCTTGATATCTT
TTCGTATTTTAGGGGGGAATTGAATAATTTTAGGCGTTTCACCACCCTAG
TTCTACTCTTTTAATCCTTAATTTGGTTGTGCTTTTCCAACTCAGTGTTT
CTCTCAAACTATACgctttttttataggaataatctgagcctcagatttc
ggAAATTACTAACAAggtactgattttaacagattttaaacccGTTTTAA
CTATTAAGTGAAGCAACtaagcgtattaagaacatAGTAAAAACATTtga
tcctgaaaatttcaaaaaattaaagaacagCCCagtctgagccaaaattt
actggttcttataaaaaagcgtttattcttaaaaaaagagtgtactgGAA
ATTTTCTACTGGGCGTTGTTTCAAGTTTGACCTTTTGCAGTAGATTTCGT
TTCATTCCGttgttttatttgaaaacacAACGGTTCGTGAAGGTATGAAT
ACTTGCTCCCATTTCattgacatcaatttttgtaTCCAAAATAAAGTATC
AAGTTTCATAACATCAAGCTTCCTGTTTTATCTAAACTTGTTAACAGGCA
TCATAAAGTTGGAACAAGTTTAGAAATATGTCTTGAGGTGTATTTTGGGT
GGACATCTTTACAGATCTTTAATGAAATTATCGTAAATAATAGATCATGA
TCATGGATTGGTCAGTTTTATGCAGTTGAGACTACAAAAATACTCGCGAA
AGCTTATCGAGTTGTACAGAGAAAGTATACTTTTGGACAAAGTATAGCCT
TAGTTTGTTTTATGGGGTTGGAAGGATTGTTTCAAATGTTATACAACCGG
ATCTTGACATACACGTTTttcaagaacaaactatttaagaacatacGGCT
TTGATGgcgaaaatattaagaacaagcttaGAACATTTTGAAACTTAACG
GACTCTAAAAAATATCCAATTTCTTGGAAATAAACCAAAATACTTACAAA
CCCGTCTagatgagaacattttaagaacatatataggctttaaactcaaa
agctaagaacatctgaaTGTTCTGGatgttttataaaaaacgtgtattat
aaTACTTGACAtattaaatttcatcataaacTCATTGCATCCGTCTCTTC
TTCATTTTGCCACTATGATTGCCAGTAATGAGCCAAGTNTAAACTCATTG
CACCCGTCTCTTCTTCACTATGATTGCCAGTAATGAGCCAAGGATTAATT
ATAAATGGCCAGCAAACTTTTCCGGACGCCTCGTTAAGGATTATTAGTTG
TCATGGTGATAAACGGGATTAAGTATCTGCTTCCTCCTTAAGTTTTACGT
TGATTGGGTTTATTATCTCTAGGTGCGCGTTGTGTGTTTACTGTTTACTC
AAGGTAGCGATTGATTTGTTACGCTCTTCCCTTATTGCTTAATGGCAAGC
AACTGCATCTTTTCACACTAGCGTTTTAGAACGCATTTTTGTTATGCTTT
ATCTTTATCTATTTTTTGGAGGTCATGAAATTCGACTTGTttacaatttg
attttttcgttGTTTTGTCAAGTTGCTTTCAAAATAAGATGTCACAACTA
GATTTTCTGTCGCTTGAGTTCGTGAtaaaaagttttcttcaaagaagtaa
gAATAGACTTCGATTATTTTGGAAAGCCATTTATGTCCACCTTACTTCGT
TAAGGCATAATAGGCAGTTAATGCAGTAGTTTGTTATTATTTATTTGCCA
ACTACAAAGTAAAATATAGTGGTAGTTCAAGTGTAtaagcattttttata
agaagcagCAGATTTTTCTCTAATgatcttattttccattttctatGCTT
CTACGGCTAcacggtttttttttttataaggaaccttagctttgctctga
gcctggagttccttatttttacagaaaatttcagcctcaaagttccttat
gagttccttatttacatagctgctaagttttgataaccatctcttactgt
tccttaaagcttgatttcttattctcagcctgagcagttccttaacaatt
tcttattttttggaccattttcagcctcgagttccttataaacgtgttcc
ttatataaaaaaaaacgtgtatatgagTAGGTTTCAGGAAAATATTAGCT
TTGCAAACTTCTGAATATTAATCCTCATTTTTTTCTATCAACCTTCAGAT
AAAGAAAGTTTGGAGTTTACCATCTCAAAGAGTCCGTTCGACCATCGACG
TTCTAAGAGTAGTTGCAATATCACAACTGTCAACACAGCTGAAAGCACTC
CACAGAAAGATGAGAAGCGTCAATCACGTCGCATGAGCGATACCATCTTG
TCCGATAAACCAGCTCCCCATCACAGTAAGTGTCCGACAAAATAATAATC
AATTTGAATACTTCTGTTAGTGCCAAAACGACAAAACGGTTCTTTCCTCT
AGAGTCATTTTTCGTTCTAGGTTTCTCTTtgtaattcaaattttgactgC
TTGTTCatgatttttcattcaaaaaatattaagaacagtgGGAGGCTTTC
GATTTTGAAGTAGATTTTTAATTGGTCTAGTTATTCTACACTGATAATTG
CTTTTGATTATCCGATTACTGGGACCAGTCAACCAGcaaataaattttgt
aattGATTCTTCACGTGGTCCTTTTCATTTTACCTCAACTAaatttttac
acgtttttttatacaagaacaaactatataagaacataaggcttcgatgg
ccaaaatattaagaacaaattaagaacattttaaggctttacagacacaa
aatggccatatttcttaagaaaatggacaaaaatgctcacaaaatcttca
aaataagaacacgtgAAGAAcagttttaggcttaaaactcaaaaagttaa
gaacatcccaagacttctaaacttttggatgttcttataaaaaaacgtgt
aatagcATTCTCTATGGTTACTAAGAAGATGTGTTATCTCAGTAGCGTAG
AAATGtcttgaaatttcatttttcactaTTCATTGATTGCTATATTTCTT
TTGTCGAGACATTCATTTGTACAGACGTCATTTTAAATGGTCGCGTAATT
AATTTCTCAATAATTTGTTTGATTCCTGTGGGTCCTGGTTTCAAACGGTT
TGGGGAGTTGCCAGGTTAAACCTTATATATTGTTATTGAACATGTAAAAA
GATAGAACAAAAATGTTTCGCCCACGTGGAGGAAAGATATAAGGAACAAC
TCAATTTCAGATGAAATAGATTTTGTTGTGTATCTTTTGAATATTGATTG
ATCAAGATTTGGACTTTCCTCTGAAAATAACATGTTAGTAACATTGTAAC
ATGAGCATGATGTGACTAAGATCTTTCACGGCTCTCTTTATTTCTGACca
ttaacattttcttttttccttacAGCTCATTCACCTTCCAAACGATTTAT
TCGTAAAATCTTTTCGCCGATGGTTTGCGGtgtgccgtcacccgaccgcc
GCNATTCACCTTCCAAACGATTTATTCGTAAAATCTTTTCACCGATGGTT
TGCGGcgtgccgtcacccgaccgccGTCACCTTTTCACCAACAATGGTTC
GCTACTCAGTCTCGGTTCGTACGATTCGGCTTCCGTAATCTCCGACCACG
AACAAGACGCGTATCCGCAACTCTTCGATTTCGGATCACACGAACTCATG
GAAGAAATGACGTTGATTGATAAAGAACTTCTTGTCAGGATTCCGTGGGG
TGAACTCTCAATACTGGGATGgatgtccactgataaggtactAGAAATAA
GGGTTTATCGAAAATCTATCGGAGAAATGTAATTTATTTAAACTAAGTTT
TTTTAACAGAAGATTTTTTTCTAAGGTTGGAACGTCCAAACAGGGGACTC
TTCATCATTAACTTATATGACTAGGATCTCTTGGTAAAGCAGCAGACTTT
TTTCCACTGCCCATGGCTTCCTTTTGAGGGTTTTTCgattaagtctaaaa
atgttcttattggATTTCAGTTTTGGTGCGATCTGCTGAAAAAAGTCCAC
TGAGCCTTAAATATTCTTAGAATGTTAAAATTTAGTCTTTATTCATAAAT
TTGTCCAAATCTTTTCGGTTCAGTACATCATTGCACCGAACATTATGAAG
ATGGTGGAATTCTTCAATCGAGTTGTGATGATGGTCACCACAAGTATTCT
CTCCGAAGAAAATGTCTACAGAAGAGCGAAAATCATTCAGAAAGCCATCA
AGGTGAGTGCTTATGTATGTACCAGTTACAGTCGACTTTCAATAGTTTGA
ACCTCTTATAATATTAGTACCTTTAAAAGAATCTTGGACTTTCCATCTTG
TACTTCATTTCAATTCATCTATACGTTAACCAGCTCTCTTGACTTGTATA
TTTTCGCTTAATTCATGAATTTAACTGCATCTTTTATCGGCTACCATCTT
CGATAAAATACTGCGATTCTATGAAAAATGTTCTACTAACTGTCTTTCTT
CTTCTAGTTGGCTTTGAAATTTCGATACCAGAAGAACTTTAATTCTTTGA
AAGCAGTCTTGGGAGGTTTGCAATGCACTCCAATCTTTCGACTGAAACAG
ACATGGAAACAAGTACCCTCTAGATATAGAAGGTAAGCCATTTTTTGTGA
taggttttcttttttgaccCTTGAACTCCTTGGGAGTTTTTGACAATTTG
CGCTTTAAGTTTTTTATTAAACGGTTACTCGGGGCTATATGTACCAAATG
GTCGAAATCGACTTTTCTGTCTACAAACATCTTTAttatttctttattat
tttccAGAGTGTTTCGTGAATTGTCCGAACTAATGAGCGAAGAAAACAAC
TTTTACAATTACCGCATGGTGCTACGTGAATCGATGGAGAAACCACCCTG
TATTCCGTTCCTTGGAAACTTCTTGACAACGGTTGCACATACACACGCTT
TTGTTTCCGTTAATTATAAGTACAAGAAAGACTCCGCGATTGAGAGCGGA
GGAGAGAGTGATAGTAACCGAACTTCGCCCTCCCCAACGAGTTCACCTCA
TGAAGGTGAAGATGAAAGCTCGAATAAAAATTCAGAATTAGATAAACAAA
TAGACCCTTGTCTGAGGAGCTCCACTTCAAAGATCCATTCAGCGAGCCAC
ATGAGAACGGATTCGGATGATAGCGGTGTCGTGTTAAATGTTCATAGGTT
AAGTCGATCCTCAGATGATTTGGAAACTAGCCCAAGGGAGGAGAGCCTTA
GCTCACCTGATGATGATGGGAGAGTACGTTTTCATGAAGAAGTTTTCGAT
AAAAAGAATTCCCAACAAGAAGATGAAGAATGTTTTTGCCCGTCTAatca
agaaactgaaaaagCGAAAAAACCACGATTCTCAGATACTGATTTACCAT
CAACCACAACCACGTCCTCGACCCCAAATCCGACGCGAACGCAACTTTCA
GTGTGTCCCCGACACCGACGCAGCGTCAGTGAAATTATCATGTCACCGAC
CAGACATCACAGTCGTAGCATAAGCGATGCTGGCATACGTAACGCAAATG
ATATAAACAATGTTATAAATAATAGACCGGTTGCCGGCAAAGAAAACAGC
GGACTTTATACTTGTGAATTGCAATTCTGGAAGTACCAAATAAATGCAGT
GCAATACAAAATCATACCTAAATCATACATACGTCGCTATTTAATGAACT
GTCCCTATAACACGGAAGAGGAAAATTATAAACTATCATTAAAACGTGAA
CCACCTGCGCCAAGGTgaataagtacatattttttaaaCGAATTTTAACC
AATTTTTGGATACCAGCCAGCtatgtaaaatttttattattatgaATTCT
ATAGACGTAGTATTCTTAGATTTTTGAGGCCTTTTAAATTGCTGATCTTT
TTTTTCCGCAAGGTATCACATTATTCTTTTACTGCTTTAGgtttaaaatt
tcttctttttctttttttaaattttctttttgagatttttttgatattat
tgagaattaatatttttgttttggttttattCTTATctctttgtttttga
tatttttattatttgttttCTTTGTAGTTTAACCTCAGCTTTATTTCACT
CAACTTCATTTAGATCCTTCACTTGTCATCGTAGGTCCGATCGGATCAAT
TCTCTTGACAATTTATGCACTCCATCTGTTTccaggcacgacgcaacggg
tatGGCAggtaccagattttcacaaaaaaaccctgaaatttccctcttcg
tcggtaaaatcgctaaaaattgCTTAAATTTTCTCATTCGTAGATATAAA
AAGAATCCGTCGTTCCTGGTTTCTGTACACCCCAAGTGGATTAGTTTTTA
TTTGGTGTTTGTTTTACTTCGTAAGTGAAAAGTATTTTTTGCGGGAAAAA
ATatggtaccttatcggggaaaacttcgttggggaaaagtgacgacattt
tggccaagtgatgaatatttttccccgacgaaatNCGGGGAAAACTTCGT
ttgggaaaagtgacgaaattttggccaagtgacgaatatttttccccgat
gaaaattttcgacgaagttttccccgataaggtacatcTTATTACCGTCA
AAATAGATTCTTTCTGTTTCATATCCTATTTGTCGttctagaaattttta
tttaagaTTCAACAGTACATattattatttaaaatttttgctgttaTTTT
TTTCCTTTGCCTTAACTGATGGCAACTTTGGTGTAAATTAGAAGCATAAC
AAACTGTATTTTTGTATATAATTTAGGCGAAAACTAAGAAAAATAtctat
aaattttcaaaactagaaaatgaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003580XLOC_003580Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006267-exon-sc0000066-1491911889:387034..387210TCONS_00006267-exon-sc0000066-1491911889:387034..387210Clytia hemisphaericaexon
TCONS_00006267-exon-sc0000066-1510915933:387034..387210TCONS_00006267-exon-sc0000066-1510915933:387034..387210Clytia hemisphaericaexon
TCONS_00006267-exon-sc0000066-1575043694:387034..387210TCONS_00006267-exon-sc0000066-1575043694:387034..387210Clytia hemisphaericaexon
TCONS_00006267-exon-sc0000066-1491911889:393532..393708TCONS_00006267-exon-sc0000066-1491911889:393532..393708Clytia hemisphaericaexon
TCONS_00006267-exon-sc0000066-1510915933:393532..393708TCONS_00006267-exon-sc0000066-1510915933:393532..393708Clytia hemisphaericaexon
TCONS_00006267-exon-sc0000066-1575043694:393532..393708TCONS_00006267-exon-sc0000066-1575043694:393532..393708Clytia hemisphaericaexon
TCONS_00006267-exon-sc0000066-1491911889:394759..395120TCONS_00006267-exon-sc0000066-1491911889:394759..395120Clytia hemisphaericaexon
TCONS_00006267-exon-sc0000066-1510915933:394759..395120TCONS_00006267-exon-sc0000066-1510915933:394759..395120Clytia hemisphaericaexon
TCONS_00006267-exon-sc0000066-1575043694:394759..395120TCONS_00006267-exon-sc0000066-1575043694:394759..395120Clytia hemisphaericaexon
TCONS_00006267-exon-sc0000066-1491911889:395457..395585TCONS_00006267-exon-sc0000066-1491911889:395457..395585Clytia hemisphaericaexon
TCONS_00006267-exon-sc0000066-1510915933:395457..395585TCONS_00006267-exon-sc0000066-1510915933:395457..395585Clytia hemisphaericaexon
TCONS_00006267-exon-sc0000066-1575043694:395457..395585TCONS_00006267-exon-sc0000066-1575043694:395457..395585Clytia hemisphaericaexon
TCONS_00006267-exon-sc0000066-1491911889:395841..395965TCONS_00006267-exon-sc0000066-1491911889:395841..395965Clytia hemisphaericaexon
TCONS_00006267-exon-sc0000066-1510915933:395841..395965TCONS_00006267-exon-sc0000066-1510915933:395841..395965Clytia hemisphaericaexon
TCONS_00006267-exon-sc0000066-1575043694:395841..395965TCONS_00006267-exon-sc0000066-1575043694:395841..395965Clytia hemisphaericaexon
TCONS_00006267-exon-sc0000066-1491911889:396141..398158TCONS_00006267-exon-sc0000066-1491911889:396141..398158Clytia hemisphaericaexon
TCONS_00006267-exon-sc0000066-1510915933:396141..398158TCONS_00006267-exon-sc0000066-1510915933:396141..398158Clytia hemisphaericaexon
TCONS_00006267-exon-sc0000066-1575043694:396141..398158TCONS_00006267-exon-sc0000066-1575043694:396141..398158Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000066supercontigsc0000066:387034..398158 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	4.03999	4.01889	1.10805e-08	1.93088e-10	0.474093	2.76347e-10	0	0	0	0	0	0	0	0	0	0	4.83154	7.04013	0	0.307123	0.939194	1.12213	0	0	0.644596	1.46408
Blast
[Close]
BLAST of TCONS_00006267 vs. Swiss-Prot (Human)
Match: RGRF1 (Ras-specific guanine nucleotide-releasing factor 1 OS=Homo sapiens GN=RASGRF1 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 5.924e-20
Identity = 52/160 (32.50%), Postives = 90/160 (56.25%), Query Frame = 3 
Query:  621 ELMEEMTLIDKELLVRIPWGELSILGWMSTDKYIIAPNIMKMVEFFNRVVMMVTTSILSEENVYRRXXXXXXXXXXXXXFRYQKNFNSLKAVLGGLQCTPIFRLKQTWKQVPSRYRRVFRELSELMSEENNFYNYRMVLRESMEKPPCIPFLGNFLTTVA 1100
            E+ E++TL+D  +  +IP+ E    GWM  +K    P IMK  + FN +  ++ + I+  E++  R   I+K + +A   R   N+N++  +   +  + IFRLK+TW +V  + + +  +L +L+S E  F N R  L+     PPC+P+LG +LT +A
Sbjct: 1041 EIAEQLTLLDHLVFKKIPYEEFFGQGWMKLEKNERTPYIMKTTKHFNDISNLIASEIIRNEDINARVSAIEKWVAVADICRCLHNYNAVLEITSSMNRSAIFRLKKTWLKVSKQTKALIDKLQKLVSSEGRFKNLREALKNC--DPPCVPYLGMYLTDLA 1198
The following BLAST results are available for this feature:
BLAST of TCONS_00006267 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RGRF15.924e-2032.50Ras-specific guanine nucleotide-releasing factor 1... [more]
back to top