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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006259 ID=TCONS_00006259|Name=TCONS_00006259|organism=Clytia hemisphaerica|type=transcript|length=2448bp
TAGAAGTTTTGTTCGAACAAGGGACAAGATCTTTTCATCGATACGTCTTC
CAGATAAATGGCGAAAATATAGCAGCTCCACCGAAATTGATCATCGAAAC
TTTCGAAAGGAAATGGTTCAGAATGGACCATCTATCACAAAACACCATTC
AATCACAACAGATCTTAGCGGAGACCAGAGCATACCGGACCGTGTGGTCG
TTAACGTGTCCGGACTGAAATTCGAAACTCTGTCCGAAACATTGGAACAG
TATCCAGAATCACTCCTTGGCAATGAAGACAAACGAAAAGCTTATTTTGA
CGAAGCacgaaatgaatattttttcgaTCGTAATCGACCTGCGTTTGAcg
ctattttattttattatcaaTCAGGTGGCAAATTATTAAGACCACCTAAC
GTCCCTATGGATGTATTTGCTGATGAGATTAGATTTTATGAACTTGGTGA
CGAGATTCTTCAACGTGTAGAACGCGAAGAAGGCTATATAGAAGAAGAAG
AACCAATTTTCCCTGAACGGGAATGGCAGAGAAAAATATGGGAGCTTTTT
GAATATCCAGACACTTCAATTGGAGCAAGAATTGTTGCAGTTATTTCAGT
GTGCATCATCACCATATCTATTGTAACCTTTTGTATTGAGACACTTCCGC
AGTTCAGATATGAGAAATTCAATTGTACAAAAATGGGGAATGGTTCGACA
GTTTGTCAAGAGAGAGAAATTCGAGATGATAAAGCTATGCCATGGTTTGG
TATCGAATCAGCGTGTATTGTTTGGTTTACATTTGAATATATCATGAGAT
TCATTTCTTCACCACAAAAGTTAGTCTTCGCAAGATCTTTCTTAAATTTG
ATAGATGTTATTGCAATTATTCCTTATTATATCACGCTACCAATGAAAAC
ATCCAATGTATCTTCACTCGGAGTATTGAGGGTCATTCGATTAGTACGTG
TGTTTAGAATTTTCAAGTTATCACGACATTCTCGTGGCTTACAGATCTTG
GGACATACTTTACGTGCCAGTTTACGTGAATTGGGATTGCTCATCTTTTT
CTTGCTCATTGGTGTCATCCTCTTCTCTTCGGCCGTTTATTATGCTGAAG
GTGGCgagaaaaagactttcaaatCCATTCCTGATGCTTTTTGGTGGGCT
GTGGTTACCATGACGACTGTGGGTTATGGAGACATGAAGCCTGAATCCGC
ATGGGGAAAGATTGTTGGTAGCCTGTGCGCTATTTCTGGTGTCTTAACCA
TTGCTTTGCCCGTTCCTGTCATTGTCTCCAATTTCAATTATTTCTACCAT
CGTGAGAACGAGCTTAGAGCAGCCGAAGCATCACGTaaagaaaaggagaa
aaaagaacAAGAACAGCGACAGAAAGAACAgaaagaacaagaagaaggag
aagcAGAAGAAGAAACGCTATTGGTGGATGGAAAAACCAAATTACCTAAC
GATACTCGAAGTAATGGTCTACACGCTATCAATCGTAATGATGAGAAAGA
GCTCACGCTTAGTAAGGAGGATATAAATGATAACAAAACAAGCGGTCATC
ATTTTATCGAGAATAACCATCCAGATATTCGACTCAATATTAATGGTGAA
GAGGAACACGACCAATTACTCGTTAAAACCTTCAAAGGGTCCAAAGAGAA
TATCAACTTTGAGACCGGGTTATGAATAAGTGAGTTCTACTAAAAGTGAa
aggttttcaaaaaatgtgtgtaTGCCTTATATAAGATAAGGCTGCGTACA
CACGCTGTAAGGTGGTGTATTCACATCTAGCTCTGATTCTTCAAGAGTGC
TGAACCCGAACCGAGAGAAAAATGAACTGCGCATTTTAAATTATaacgat
ttaatttttttaagttacCCTTAAATTAACTGTATATTATTAAAGGCTTG
CTGTCTACAGCTTACAGATGGACAAATAAATCCGCGGCGAATGGATATGG
ACGAATGAATGAATGGCCTGTATTTTTTTACCTACTACTATTACGTTACG
AAAGAACAGTTTCTATAACGACGCCTGGTCGAAAGAGCtgacaaacaaaa
aacaatgaaGTTAATTGACATGTAAAATCAACCGTTATAATTTTAAGAAA
tacttaatttttcgaaaaagaaatcgaaTTTTATGCTTCACTGCAGGGAA
AAATTATGAATCAAGAATTTATTTGAAATGAATAACTTATTactaatatt
tatttttcttactttgcagtgttttttttcttgttacCATTTTTAGTGTA
AAAAGTttaatcaaatattttcaaatagttCCCAAACCACTTGGAAACCA
TGTTAGAATAATTGACTACGTTCAATGGTTCAATGCCAGCTGGGATACAA
GTACACATTTTTATAAACCGACCATAAAATTGCTTTTAAATGGAAAACAT
CCTTTGATTTTGGAAATTCTGGgattttttcttatatttaaaTTTATG Run BLAST on NCBI transcript from alignment at sc0000066:342884..346154+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006259 ID=TCONS_00006259|Name=TCONS_00006259|organism=Clytia hemisphaerica|type=transcript|length=3271bp|location=Sequence derived from alignment at sc0000066:342884..346154+ (Clytia hemisphaerica)
TAGAAGTTTTGTTCGAACAAGGGACAAGATCTTTTCATCGATACGTCTTC
CAGGTAGAACCtgaatgagaaaataatttcttctgtttttaaaattttta
ctcGATGTCTCCTTAACATCTTATTATACTGGTTGAAGAAAACGGTCTCT
TcgaaaaatctttgtttttttttcttcaattttcttctcATGTTTATGAG
TtggacatttttttgacttgCTAATAAACCTTTATTCCTGGTACTTTTCA
TCTTCCTCATATTATATATAAGGgtttttttcaacaatttttttctttaa
aaaaaaaacttttcacttaTGAATAATTCACATCTTCTGTTTCTTCTATC
AATTATTTAAAACGtaatataagaaaaattttccagCGAATAACTCGTCT
GTTAttatcttaaaagaaaaatcaaatttgtctTTTATTCGAGAAAAATA
TGGCATAGTTGTGTGTGAGGAGAGTTCTTTTTAACCTTGACAAGTTTACA
TTTCTTCATCTCTAACTGCCTTCCAACTTTTTCATTCGTATTCCAATACA
TTTTCCTATGATTTGGCAaaaactattttataaaaaacgttttattattt
tctctcTTATTCTCTGTATCTTATCTTTAGATAAATGGCGAAAATATAGC
AGCTCCACCGAAATTGATCATCGAAACTTTCGAAAGGAAATGGTTCAGAA
TGGACCATCTATCACAAAACACCATTCAATCACAACAGATCTTAGCGGAG
ACCAGAGCATACCGGACCGTGTGGTCGTTAACGTGTCCGGACTGAAATTC
GAAACTCTGTCCGAAACATTGGAACAGTATCCAGAATCACTCCTTGGCAA
TGAAGACAAACGAAAAGCTTATTTTGACGAAGCacgaaatgaatattttt
tcgaTCGTAATCGACCTGCGTTTGAcgctattttattttattatcaaTCA
GGTGGCAAATTATTAAGACCACCTAACGTCCCTATGGATGTATTTGCTGA
TGAGATTAGATTTTATGAACTTGGTGACGAGATTCTTCAACGTGTAGAAC
GCGAAGAAGGCTATATAGAAGAAGAAGAACCAATTTTCCCTGAACGGGAA
TGGCAGAGAAAAATATGGGAGCTTTTTGAATATCCAGACACTTCAATTGG
AGCAAGAATTGTTGCAGTTATTTCAGTGTGCATCATCACCATATCTATTG
TAACCTTTTGTATTGAGACACTTCCGCAGTTCAGATATGAGAAATTCAAT
TGTACAAAAATGGGGAATGGTTCGACAGTTTGTCAAGAGAGAGAAATTCG
AGATGATAAAGCTATGCCATGGTTTGGTATCGAATCAGCGTGTATTGTTT
GGTTTACATTTGAATATATCATGAGATTCATTTCTTCACCACAAAAGTTA
GTCTTCGCAAGATCTTTCTTAAATTTGATAGATGTTATTGCAATTATTCC
TTATTATATCACGCTACCAATGAAAACATCCAATGTATCTTCACTCGGAG
TATTGAGGGTCATTCGATTAGTACGTGTGTTTAGAATTTTCAAGTTATCA
CGACATTCTCGTGGCTTACAGATCTTGGGACATACTTTACGTGCCAGTTT
ACGTGAATTGGGATTGCTCATCTTTTTCTTGCTCATTGGTGTCATCCTCT
TCTCTTCGGCCGTTTATTATGCTGAAGGTGGCgagaaaaagactttcaaa
tCCATTCCTGATGCTTTTTGGTGGGCTGTGGTTACCATGACGACTGTGGG
TTATGGAGACATGAAGCCTGAATCCGCATGGGGAAAGATTGTTGGTAGCC
TGTGCGCTATTTCTGGTGTCTTAACCATTGCTTTGCCCGTTCCTGTCATT
GTCTCCAATTTCAATTATTTCTACCATCGGTAAGTTTACAACACTGCCTT
ActtattatttttcactttttactttGCTTCCTCATTTCTTAAGCTTTCC
TAAATATTGAAAATCCTTACTCTAAAAACATTGTATTTCCAAAAGGATGA
AAAAATTTACACCAGTTTTAAGTTTGTTCTTCCTCCCATACTTCCTCTTG
CATCTTCCTAAAAATTGAACGTGTAATCTGTTGATAAAGATCAGTTATCT
GATACCACTATTTTTCCTTCTCTAGTGAGAACGAGCTTAGAGCAGCCGAA
GCATCACGTaaagaaaaggagaaaaaagaacAAGAACAGCGACAGAAAGA
ACAgaaagaacaagaagaaggagaagcAGAAGAAGAAACGCTATTGGTGG
ATGGAAAAACCAAATTACCTAACGATACTCGAAGTAATGGTCTACACGCT
ATCAATCGTAATGATGAGAAAGAGCTCACGCTTAGTAAGGAGGATATAAA
TGATAACAAAACAAGCGGTCATCATTTTATCGAGAATAACCATCCAGATA
TTCGACTCAATATTAATGGTGAAGAGGAACACGACCAATTACTCGTTAAA
ACCTTCAAAGGGTCCAAAGAGAATATCAACTTTGAGACCGGGTTATGAAT
AAGTGAGTTCTACTAAAAGTGAaaggttttcaaaaaatgtgtgtaTGCCT
TATATAAGATAAGGCTGCGTACACACGCTGTAAGGTGGTGTATTCACATC
TAGCTCTGATTCTTCAAGAGTGCTGAACCCGAACCGAGAGAAAAATGAAC
TGCGCATTTTAAATTATaacgatttaatttttttaagttacCCTTAAATT
AACTGTATATTATTAAAGGCTTGCTGTCTACAGCTTACAGATGGACAAAT
AAATCCGCGGCGAATGGATATGGACGAATGAATGAATGGCCTGTATTTTT
TTACCTACTACTATTACGTTACGAAAGAACAGTTTCTATAACGACGCCTG
GTCGAAAGAGCtgacaaacaaaaaacaatgaaGTTAATTGACATGTAAAA
TCAACCGTTATAATTTTAAGAAAtacttaatttttcgaaaaagaaatcga
aTTTTATGCTTCACTGCAGGGAAAAATTATGAATCAAGAATTTATTTGAA
ATGAATAACTTATTactaatatttatttttcttactttgcagtgtttttt
ttcttgttacCATTTTTAGTGTAAAAAGTttaatcaaatattttcaaata
gttCCCAAACCACTTGGAAACCATGTTAGAATAATTGACTACGTTCAATG
GTTCAATGCCAGCTGGGATACAAGTACACATTTTTATAAACCGACCATAA
AATTGCTTTTAAATGGAAAACATCCTTTGATTTTGGAAATTCTGGgattt
tttcttatatttaaaTTTATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006259-exon-sc0000066-1491911889:342884..342936 | TCONS_00006259-exon-sc0000066-1491911889:342884..342936 | Clytia hemisphaerica | exon |
| TCONS_00006259-exon-sc0000066-1510915933:342884..342936 | TCONS_00006259-exon-sc0000066-1510915933:342884..342936 | Clytia hemisphaerica | exon |
| TCONS_00006259-exon-sc0000066-1575043694:342884..342936 | TCONS_00006259-exon-sc0000066-1575043694:342884..342936 | Clytia hemisphaerica | exon |
| TCONS_00006259-exon-sc0000066-1491911889:343514..344762 | TCONS_00006259-exon-sc0000066-1491911889:343514..344762 | Clytia hemisphaerica | exon |
| TCONS_00006259-exon-sc0000066-1510915933:343514..344762 | TCONS_00006259-exon-sc0000066-1510915933:343514..344762 | Clytia hemisphaerica | exon |
| TCONS_00006259-exon-sc0000066-1575043694:343514..344762 | TCONS_00006259-exon-sc0000066-1575043694:343514..344762 | Clytia hemisphaerica | exon |
| TCONS_00006259-exon-sc0000066-1491911889:345009..346154 | TCONS_00006259-exon-sc0000066-1491911889:345009..346154 | Clytia hemisphaerica | exon |
| TCONS_00006259-exon-sc0000066-1510915933:345009..346154 | TCONS_00006259-exon-sc0000066-1510915933:345009..346154 | Clytia hemisphaerica | exon |
| TCONS_00006259-exon-sc0000066-1575043694:345009..346154 | TCONS_00006259-exon-sc0000066-1575043694:345009..346154 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000066 | supercontig | sc0000066:342884..346154 + |
Blast
BLAST of TCONS_00006259 vs. Swiss-Prot (Human)
Match: KCNA2 (Potassium voltage-gated channel subfamily A member 2 OS=Homo sapiens GN=KCNA2 PE=1 SV=2) HSP 1 Score: 370.933 bits (951), Expect = 2.407e-118 Identity = 244/411 (59.37%), Postives = 307/411 (74.70%), Query Frame = 2
Query: 131 SITKHHSITTDLSGDQSIPDRVVVNVSGLKFETLSETLEQYPESLLGNEDKRKAYFDEARNEYFFDRNRPAFDAILFYYQSGGKLLRPPNVPMDVFADEIRFYELGDEILQRVXXXXXXXXXXXXXXXXXXWQRKIWELFEYPDTSIGARXXXXXXXXXXXXXXXXXXXETLPQFRYEKFNCTKMG-------NGSTVCQEREIRDDKAMPWFGIESACIVWFTFEYIMRFISSPQKLVFARSFLNLIDVIAIIPYYITL----------PMKTSNVSSLGXXXXXXXXXXXXXXKLSRHSRGLQILGHTLRASLREXXXXXXXXXXXXXXXSSAVYYAEGGEKKT-FKSIPDAFWWAVVTMTTVGYGDMKPESAWGKIVGSLCAISGVLTIALPVPVIVSNFNYFYHREN 1309
++ H T D D +RVV+N+SGL+FET +TL Q+PE+LLG+ KR YFD RNEYFFDRNRP+FDAIL+YYQSGG+L RP NVP+D+F++EIRFYELG+E ++ +EGYI+EEE PE E+QR++W LFEYP++S ARI+A++SV +I ISIV+FC+ETLP FR E + G N + Q+ D P+F +E+ CI+WF+FE+++RF + P K F + +N+ID++AIIPY+ITL + SL +LRVIRLVRVFRIFKLSRHS+GLQILG TL+AS+RELGLLIFFL IGVILFSSAVY+AE E+++ F SIPDAFWWAVV+MTTVGYGDM P + GKIVGSLCAI+GVLTIALPVPVIVSNFNYFYHRE
Sbjct: 14 ALPGHPQDTYDPEADHECCERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDIFSEEIRFYELGEEAMEMFREDEGYIKEEERPLPENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLPIFRDENEDMHGSGVTFHTYSNSTIGYQQSTSFTD---PFFIVETLCIIWFSFEFLVRFFACPSKAGFFTNIMNIIDIVAIIPYFITLGTELAEKPEDAQQGQQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADERESQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRET 421
The following BLAST results are available for this feature:
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