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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006258 ID=TCONS_00006258|Name=TCONS_00006258|organism=Clytia hemisphaerica|type=transcript|length=2624bp
AAATAAGTCGAATAATGAAGCTAACTTacgttatttgaaaaaaaagtcgt
AATTTGTAActctagaaaaaaaaaatatatgaagaCTCTATTTGCAAGTC
TAAAATGACGTTCTATTTTCGTGTTGAATAGCCTGGGTAGTGTGAATGGT
GCGATCGATCGAATCTGATGTCTATCTTTGAGCAAACATTTTTACCTTAA
TCAATAATATATTGATTTCTCTTTATTTGATAAATGGCGAAAATATAGCA
GCTCCACCGAAATTGATCATCGAAACTTTCGAAAGGAAATGGTTCAGAAT
GGACCATCTATCACAAAACACCATTCAATCACAACAGATCTTAGCGGAGA
CCAGAGCATACCGGACCGTGTGGTCGTTAACGTGTCCGGACTGAAATTCG
AAACTCTGTCCGAAACATTGGAACAGTATCCAGAATCACTCCTTGGCAAT
GAAGACAAACGAAAAGCTTATTTTGACGAAGCacgaaatgaatatttttt
cgaTCGTAATCGACCTGCGTTTGAcgctattttattttattatcaaTCAG
GTGGCAAATTATTAAGACCACCTAACGTCCCTATGGATGTATTTGCTGAT
GAGATTAGATTTTATGAACTTGGTGACGAGATTCTTCAACGTGTAGAACG
CGAAGAAGGCTATATAGAAGAAGAAGAACCAATTTTCCCTGAACGGGAAT
GGCAGAGAAAAATATGGGAGCTTTTTGAATATCCAGACACTTCAATTGGA
GCAAGAATTGTTGCAGTTATTTCAGTGTGCATCATCACCATATCTATTGT
AACCTTTTGTATTGAGACACTTCCGCAGTTCAGATATGAGAAATTCAATT
GTACAAAAATGGGGAATGGTTCGACAGTTTGTCAAGAGAGAGAAATTCGA
GATGATAAAGCTATGCCATGGTTTGGTATCGAATCAGCGTGTATTGTTTG
GTTTACATTTGAATATATCATGAGATTCATTTCTTCACCACAAAAGTTAG
TCTTCGCAAGATCTTTCTTAAATTTGATAGATGTTATTGCAATTATTCCT
TATTATATCACGCTACCAATGAAAACATCCAATGTATCTTCACTCGGAGT
ATTGAGGGTCATTCGATTAGTACGTGTGTTTAGAATTTTCAAGTTATCAC
GACATTCTCGTGGCTTACAGATCTTGGGACATACTTTACGTGCCAGTTTA
CGTGAATTGGGATTGCTCATCTTTTTCTTGCTCATTGGTGTCATCCTCTT
CTCTTCGGCCGTTTATTATGCTGAAGGTGGCgagaaaaagactttcaaat
CCATTCCTGATGCTTTTTGGTGGGCTGTGGTTACCATGACGACTGTGGGT
TATGGAGACATGAAGCCTGAATCCGCATGGGGAAAGATTGTTGGTAGCCT
GTGCGCTATTTCTGGTGTCTTAACCATTGCTTTGCCCGTTCCTGTCATTG
TCTCCAATTTCAATTATTTCTACCATCGTGAGAACGAGCTTAGAGCAGCC
GAAGCATCACGTaaagaaaaggagaaaaaagaacAAGAACAGCGACAGAA
AGAACAgaaagaacaagaagaaggagaagcAGAAGAAGAAACGCTATTGG
TGGATGGAAAAACCAAATTACCTAACGATACTCGAAGTAATGGTCTACAC
GCTATCAATCGTAATGATGAGAAAGAGCTCACGCTTAGTAAGGAGGATAT
AAATGATAACAAAACAAGCGGTCATCATTTTATCGAGAATAACCATCCAG
ATATTCGACTCAATATTAATGGTGAAGAGGAACACGACCAATTACTCGTT
AAAACCTTCAAAGGGTCCAAAGAGAATATCAACTTTGAGACCGGGTTATG
AATAAGTGAGTTCTACTAAAAGTGAaaggttttcaaaaaatgtgtgtaTG
CCTTATATAAGATAAGGCTGCGTACACACGCTGTAAGGTGGTGTATTCAC
ATCTAGCTCTGATTCTTCAAGAGTGCTGAACCCGAACCGAGAGAAAAATG
AACTGCGCATTTTAAATTATaacgatttaatttttttaagttacCCTTAA
ATTAACTGTATATTATTAAAGGCTTGCTGTCTACAGCTTACAGATGGACA
AATAAATCCGCGGCGAATGGATATGGACGAATGAATGAATGGCCTGTATT
TTTTTACCTACTACTATTACGTTACGAAAGAACAGTTTCTATAACGACGC
CTGGTCGAAAGAGCtgacaaacaaaaaacaatgaaGTTAATTGACATGTA
AAATCAACCGTTATAATTTTAAGAAAtacttaatttttcgaaaaagaaat
cgaaTTTTATGCTTCACTGCAGGGAAAAATTATGAATCAAGAATTTATTT
GAAATGAATAACTTATTactaatatttatttttcttactttgcagtgttt
tttttcttgttacCATTTTTAGTGTAAAAAGTttaatcaaatattttcaa
atagttCCCAAACCACTTGGAAACCATGTTAGAATAATTGACTACGTTCA
ATGGTTCAATGCCAGCTGGGATACAAGTACACATTTTTATAAACCGACCA
TAAAATTGCTTTTAAATGGAAAACATCCTTTGATTTTGGAAATTCTGGga
ttttttcttatatttaaaTTTATG Run BLAST on NCBI transcript from alignment at sc0000066:342635..346154+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006258 ID=TCONS_00006258|Name=TCONS_00006258|organism=Clytia hemisphaerica|type=transcript|length=3520bp|location=Sequence derived from alignment at sc0000066:342635..346154+ (Clytia hemisphaerica)
AAATAAGTCGAATAATGAAGCTAACTTacgttatttgaaaaaaaagtcgt
AATTTGTAActctagaaaaaaaaaatatatgaagaCTCTATTTGCAAGTC
TAAAATGACGTTCTATTTTCGTGTTGAATAGCCTGGGTAGTGTGAATGGT
GCGATCGATCGAATCTGATGTCTATCTTTGAGCAAACATTTTTACCTTAA
TCAATAATATATTGATTTCTCTTTATTTGGTAAGAATAAGACAATAGAGT
AGAAGTTTTGTTCGAACAAGGGACAAGATCTTTTCATCGATACGTCTTCC
AGGTAGAACCtgaatgagaaaataatttcttctgtttttaaaatttttac
tcGATGTCTCCTTAACATCTTATTATACTGGTTGAAGAAAACGGTCTCTT
cgaaaaatctttgtttttttttcttcaattttcttctcATGTTTATGAGT
tggacatttttttgacttgCTAATAAACCTTTATTCCTGGTACTTTTCAT
CTTCCTCATATTATATATAAGGgtttttttcaacaatttttttctttaaa
aaaaaaacttttcacttaTGAATAATTCACATCTTCTGTTTCTTCTATCA
ATTATTTAAAACGtaatataagaaaaattttccagCGAATAACTCGTCTG
TTAttatcttaaaagaaaaatcaaatttgtctTTTATTCGAGAAAAATAT
GGCATAGTTGTGTGTGAGGAGAGTTCTTTTTAACCTTGACAAGTTTACAT
TTCTTCATCTCTAACTGCCTTCCAACTTTTTCATTCGTATTCCAATACAT
TTTCCTATGATTTGGCAaaaactattttataaaaaacgttttattatttt
ctctcTTATTCTCTGTATCTTATCTTTAGATAAATGGCGAAAATATAGCA
GCTCCACCGAAATTGATCATCGAAACTTTCGAAAGGAAATGGTTCAGAAT
GGACCATCTATCACAAAACACCATTCAATCACAACAGATCTTAGCGGAGA
CCAGAGCATACCGGACCGTGTGGTCGTTAACGTGTCCGGACTGAAATTCG
AAACTCTGTCCGAAACATTGGAACAGTATCCAGAATCACTCCTTGGCAAT
GAAGACAAACGAAAAGCTTATTTTGACGAAGCacgaaatgaatatttttt
cgaTCGTAATCGACCTGCGTTTGAcgctattttattttattatcaaTCAG
GTGGCAAATTATTAAGACCACCTAACGTCCCTATGGATGTATTTGCTGAT
GAGATTAGATTTTATGAACTTGGTGACGAGATTCTTCAACGTGTAGAACG
CGAAGAAGGCTATATAGAAGAAGAAGAACCAATTTTCCCTGAACGGGAAT
GGCAGAGAAAAATATGGGAGCTTTTTGAATATCCAGACACTTCAATTGGA
GCAAGAATTGTTGCAGTTATTTCAGTGTGCATCATCACCATATCTATTGT
AACCTTTTGTATTGAGACACTTCCGCAGTTCAGATATGAGAAATTCAATT
GTACAAAAATGGGGAATGGTTCGACAGTTTGTCAAGAGAGAGAAATTCGA
GATGATAAAGCTATGCCATGGTTTGGTATCGAATCAGCGTGTATTGTTTG
GTTTACATTTGAATATATCATGAGATTCATTTCTTCACCACAAAAGTTAG
TCTTCGCAAGATCTTTCTTAAATTTGATAGATGTTATTGCAATTATTCCT
TATTATATCACGCTACCAATGAAAACATCCAATGTATCTTCACTCGGAGT
ATTGAGGGTCATTCGATTAGTACGTGTGTTTAGAATTTTCAAGTTATCAC
GACATTCTCGTGGCTTACAGATCTTGGGACATACTTTACGTGCCAGTTTA
CGTGAATTGGGATTGCTCATCTTTTTCTTGCTCATTGGTGTCATCCTCTT
CTCTTCGGCCGTTTATTATGCTGAAGGTGGCgagaaaaagactttcaaat
CCATTCCTGATGCTTTTTGGTGGGCTGTGGTTACCATGACGACTGTGGGT
TATGGAGACATGAAGCCTGAATCCGCATGGGGAAAGATTGTTGGTAGCCT
GTGCGCTATTTCTGGTGTCTTAACCATTGCTTTGCCCGTTCCTGTCATTG
TCTCCAATTTCAATTATTTCTACCATCGGTAAGTTTACAACACTGCCTTA
cttattatttttcactttttactttGCTTCCTCATTTCTTAAGCTTTCCT
AAATATTGAAAATCCTTACTCTAAAAACATTGTATTTCCAAAAGGATGAA
AAAATTTACACCAGTTTTAAGTTTGTTCTTCCTCCCATACTTCCTCTTGC
ATCTTCCTAAAAATTGAACGTGTAATCTGTTGATAAAGATCAGTTATCTG
ATACCACTATTTTTCCTTCTCTAGTGAGAACGAGCTTAGAGCAGCCGAAG
CATCACGTaaagaaaaggagaaaaaagaacAAGAACAGCGACAGAAAGAA
CAgaaagaacaagaagaaggagaagcAGAAGAAGAAACGCTATTGGTGGA
TGGAAAAACCAAATTACCTAACGATACTCGAAGTAATGGTCTACACGCTA
TCAATCGTAATGATGAGAAAGAGCTCACGCTTAGTAAGGAGGATATAAAT
GATAACAAAACAAGCGGTCATCATTTTATCGAGAATAACCATCCAGATAT
TCGACTCAATATTAATGGTGAAGAGGAACACGACCAATTACTCGTTAAAA
CCTTCAAAGGGTCCAAAGAGAATATCAACTTTGAGACCGGGTTATGAATA
AGTGAGTTCTACTAAAAGTGAaaggttttcaaaaaatgtgtgtaTGCCTT
ATATAAGATAAGGCTGCGTACACACGCTGTAAGGTGGTGTATTCACATCT
AGCTCTGATTCTTCAAGAGTGCTGAACCCGAACCGAGAGAAAAATGAACT
GCGCATTTTAAATTATaacgatttaatttttttaagttacCCTTAAATTA
ACTGTATATTATTAAAGGCTTGCTGTCTACAGCTTACAGATGGACAAATA
AATCCGCGGCGAATGGATATGGACGAATGAATGAATGGCCTGTATTTTTT
TACCTACTACTATTACGTTACGAAAGAACAGTTTCTATAACGACGCCTGG
TCGAAAGAGCtgacaaacaaaaaacaatgaaGTTAATTGACATGTAAAAT
CAACCGTTATAATTTTAAGAAAtacttaatttttcgaaaaagaaatcgaa
TTTTATGCTTCACTGCAGGGAAAAATTATGAATCAAGAATTTATTTGAAA
TGAATAACTTATTactaatatttatttttcttactttgcagtgttttttt
tcttgttacCATTTTTAGTGTAAAAAGTttaatcaaatattttcaaatag
ttCCCAAACCACTTGGAAACCATGTTAGAATAATTGACTACGTTCAATGG
TTCAATGCCAGCTGGGATACAAGTACACATTTTTATAAACCGACCATAAA
ATTGCTTTTAAATGGAAAACATCCTTTGATTTTGGAAATTCTGGgatttt
ttcttatatttaaaTTTATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006258-exon-sc0000066-1491911889:342635..342863 | TCONS_00006258-exon-sc0000066-1491911889:342635..342863 | Clytia hemisphaerica | exon |
| TCONS_00006258-exon-sc0000066-1510915933:342635..342863 | TCONS_00006258-exon-sc0000066-1510915933:342635..342863 | Clytia hemisphaerica | exon |
| TCONS_00006258-exon-sc0000066-1575043694:342635..342863 | TCONS_00006258-exon-sc0000066-1575043694:342635..342863 | Clytia hemisphaerica | exon |
| TCONS_00006258-exon-sc0000066-1491911889:343514..344762 | TCONS_00006258-exon-sc0000066-1491911889:343514..344762 | Clytia hemisphaerica | exon |
| TCONS_00006258-exon-sc0000066-1510915933:343514..344762 | TCONS_00006258-exon-sc0000066-1510915933:343514..344762 | Clytia hemisphaerica | exon |
| TCONS_00006258-exon-sc0000066-1575043694:343514..344762 | TCONS_00006258-exon-sc0000066-1575043694:343514..344762 | Clytia hemisphaerica | exon |
| TCONS_00006258-exon-sc0000066-1491911889:345009..346154 | TCONS_00006258-exon-sc0000066-1491911889:345009..346154 | Clytia hemisphaerica | exon |
| TCONS_00006258-exon-sc0000066-1510915933:345009..346154 | TCONS_00006258-exon-sc0000066-1510915933:345009..346154 | Clytia hemisphaerica | exon |
| TCONS_00006258-exon-sc0000066-1575043694:345009..346154 | TCONS_00006258-exon-sc0000066-1575043694:345009..346154 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000066 | supercontig | sc0000066:342635..346154 + |
Blast
BLAST of TCONS_00006258 vs. Swiss-Prot (Human)
Match: KCNA2 (Potassium voltage-gated channel subfamily A member 2 OS=Homo sapiens GN=KCNA2 PE=1 SV=2) HSP 1 Score: 370.933 bits (951), Expect = 1.173e-117 Identity = 244/411 (59.37%), Postives = 307/411 (74.70%), Query Frame = 1
Query: 307 SITKHHSITTDLSGDQSIPDRVVVNVSGLKFETLSETLEQYPESLLGNEDKRKAYFDEARNEYFFDRNRPAFDAILFYYQSGGKLLRPPNVPMDVFADEIRFYELGDEILQRVXXXXXXXXXXXXXXXXXXWQRKIWELFEYPDTSIGARXXXXXXXXXXXXXXXXXXXETLPQFRYEKFNCTKMG-------NGSTVCQEREIRDDKAMPWFGIESACIVWFTFEYIMRFISSPQKLVFARSFLNLIDVIAIIPYYITL----------PMKTSNVSSLGXXXXXXXXXXXXXXKLSRHSRGLQILGHTLRASLREXXXXXXXXXXXXXXXSSAVYYAEGGEKKT-FKSIPDAFWWAVVTMTTVGYGDMKPESAWGKIVGSLCAISGVLTIALPVPVIVSNFNYFYHREN 1485
++ H T D D +RVV+N+SGL+FET +TL Q+PE+LLG+ KR YFD RNEYFFDRNRP+FDAIL+YYQSGG+L RP NVP+D+F++EIRFYELG+E ++ +EGYI+EEE PE E+QR++W LFEYP++S ARI+A++SV +I ISIV+FC+ETLP FR E + G N + Q+ D P+F +E+ CI+WF+FE+++RF + P K F + +N+ID++AIIPY+ITL + SL +LRVIRLVRVFRIFKLSRHS+GLQILG TL+AS+RELGLLIFFL IGVILFSSAVY+AE E+++ F SIPDAFWWAVV+MTTVGYGDM P + GKIVGSLCAI+GVLTIALPVPVIVSNFNYFYHRE
Sbjct: 14 ALPGHPQDTYDPEADHECCERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDIFSEEIRFYELGEEAMEMFREDEGYIKEEERPLPENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLPIFRDENEDMHGSGVTFHTYSNSTIGYQQSTSFTD---PFFIVETLCIIWFSFEFLVRFFACPSKAGFFTNIMNIIDIVAIIPYFITLGTELAEKPEDAQQGQQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADERESQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRET 421
The following BLAST results are available for this feature:
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