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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006254 ID=TCONS_00006254|Name=TCONS_00006254|organism=Clytia hemisphaerica|type=transcript|length=925bp
NNTTCCGAGGGTTGCCGAAACCTGATTGGGTGAAACAAGACTCACGCAAG
AGATATCAAGGACCAACACGAATGAGGGGTTTCATTCAACTTCCCACCAT
CAGTAGTGTTATTGTGGAATTTAAAATCGAATCTCAAGGCTGTGAAGATC
CTGGAAAAGTTGGCTGTGGACAAGCGCGAGTTTATTTGAACAATCAGCCA
CAAAATCATGCACTCGTTCAAAGAGGATTGAGTTTCGTTACTCTGAACCC
CACTACAGgagCAATAACTGGCAAACGAGCTTTCGACATCCACGGACACC
CACATTGTGTTCATCTCTTCAACTGGATCAAAAGTCTTCCGCGAGGCACA
ATCGTATTGGGAGCCGGTCAAGATGAATATGCTCGCTCGTACAATGCCGA
CTGTGATAAAGCGCTCGCTCTCATCAACGGTAAAAAACCCGTCAATTTCG
GATACAGAGGATCTTTTGCAATCGCTGGTTATCGAGGCACACCGAAACCT
AGTTGGGCGAAACAAGATTCGCGACTCAGAGGCAAGGGTCCAACATTCCT
TCAAGGTCGAATCGCTTTTCCTGTTGCATAATCATACACCAAAATTTAAA
TGTTGTTACGAGACATTATATTTATGAATTATTTAGGTTGATGTTCATAT
GAGTCAACCCATAGTTGTATTACATGACCGTTTTAAtgcgaaaaattaga
aatacaTCATATGACGTATCTCCCACTGCTTACAcatcattttcaaacaa
aagaaagaatatCCCTAGTAATAGCACTAATTTCTATTCTATTATTAATT
CTGCTTCGTCAGCATAAGAGGCGCGCCTTCTTTCTATATAATAAAAGGTG
TGACAGTTTCATTTCAACTcgtatagaaaaaagaaaatatcactCATACG
TTTTGTTCTAGTTTTCAATTcattt Run BLAST on NCBI protein sequence of TCONS_00006254-protein >TCONS_00006254-protein ID=TCONS_00006254-protein|Name=TCONS_00006254-protein|organism=Clytia hemisphaerica|type=polypeptide|length=192bp
FRGLPKPDWVKQDSRKRYQGPTRMRGFIQLPTISSVIVEFKIESQGCEDP
GKVGCGQARVYLNNQPQNHALVQRGLSFVTLNPTTGAITGKRAFDIHGHP
HCVHLFNWIKSLPRGTIVLGAGQDEYARSYNADCDKALALINGKKPVNFG
YRGSFAIAGYRGTPKPSWAKQDSRLRGKGPTFLQGRIAFPVA Run BLAST on NCBI transcript from alignment at sc0000066:319407..321533+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006254 ID=TCONS_00006254|Name=TCONS_00006254|organism=Clytia hemisphaerica|type=transcript|length=2127bp|location=Sequence derived from alignment at sc0000066:319407..321533+ (Clytia hemisphaerica)
NNTTCCGAGGGTTGCCGAAACCTGATTGGGTGAAACAAGACTCACGCAAG
AGATATCAAGGACCAACACGAATGAGGGGTTTCATTCAACTTCCCACCAT
CAGTAGTGGTAATTACTCATCTTAATTTCATATTGATTTTTAGAGCACAC
GACTGTATGAATATTCTCAGTTGCCTAATAAACGGTAATGAAGGGAAGAC
CTAATTACTGGGGGGATGGAAGTTGTACCTTTAAATAtcccccaaaataa
ggtaattatagaCTAAAACCTTGCTATTTGTAGCAAAAATAATAACTACT
CTTCTTTTGACAGccgaaaatcttttcaaaaattaataaacctTTACCTT
TTCGCACCCTCTAagataaaataataaaagacAATTTCTATACACTCGTG
TTGTCATTCGTTTTTCAGTTATTGTGGAATTTAAAATCGAATCTCAAGGC
TGTGAAGATCCTGGAAAAGTTGGCTGTGGACAAGCGCGAGTTTATTTGAA
CAATCAGCCACAAAATCATGCACTCGTTCAAAGAGGATTGAGTTTCGTTA
CTCTGAACCCCACTACAGGTATGTTTtgtagtttttggacctacctcgga
ggttcTATGAATTAACCCATTTCCGTCCGTTTGCCCGTTcttctgttacc
agcttttcgcTTTTCTCAGAATCGACTCAacgtttttttctgattttttt
gcacaatgatgcaaaatggcaatactaCCCGGGAACAGGCGACTTTCGAG
AAAAATTtggggttttttagactttgtgtaAAACTGCTACATTAGtttat
tctgatttttttgcataaagacaGAAGGCAAAGTAACTGAAGAGGTTTTC
CCGGTTTTCTTTTggctttaaaaatcgaattcTTTTATTTTGGGGAATTT
CCTTCTGTCATTTTTAGGggaaatgagcatttctcgcgattggcttggta
ttttttctgatttttcgcaCAATTACGTCTAATGGTGATGTTTAAAAAAT
CTGGTGAAAcctgattttccgaaaaataattttctgggCAAAGTTGGGCC
AAAAGGTAGAAGAAACAGGGTTTTTTTGGACACGGATCTAGAAATACAGG
ATTAcactttacgttttttgttttcaaggagCAATAACTGGCAAACGAGC
TTTCGACATCCACGGACACCCACATTGTGTTCATCTCTTCAACTGGATCA
AAAGTCTTCCGCGAGGGTAAGTGTTCACAGTTTTTCTAATTGCAAAGTTA
ATTTAGTGAGTTTGACCGTAAAACATTCGAACTGTTCGAAAAGGGGCAAA
AATGTTGTAGATTTCAACACGCATAGTATTGATTTTCGGgttaattttgt
tatttttttcgccCGCCCGTGGTTTGCGCTAACTTTACATTTATATTTAA
GAGTTTGTTCTTTTAACCATGGTAAGTGCAACCAACAATAGGAAATCGGG
AAATAGGCGGGAAAGTAATTTAAAAATGTAGTATTTCACTAAATTTTGCC
GATGACTTcactttatataatttgaccataatttgatttttatttcagCA
CAATCGTATTGGGAGCCGGTCAAGATGAATATGCTCGCTCGTACAATGCC
GACTGTGATAAAGCGCTCGCTCTCATCAACGGTAAAAAACCCGTCAATTT
CGGATACAGAGGATCTTTTGCAATCGCTGGTTATCGAGGCACACCGAAAC
CTAGTTGGGCGAAACAAGATTCGCGACTCAGAGGCAAGGGTCCAACATTC
CTTCAAGGTCGAATCGCTTTTCCTGTTGCATAATCATACACCAAAATTTA
AATGTTGTTACGAGACATTATATTTATGAATTATTTAGGTTGATGTTCAT
ATGAGTCAACCCATAGTTGTATTACATGACCGTTTTAAtgcgaaaaatta
gaaatacaTCATATGACGTATCTCCCACTGCTTACAcatcattttcaaac
aaaagaaagaatatCCCTAGTAATAGCACTAATTTCTATTCTATTATTAA
TTCTGCTTCGTCAGCATAAGAGGCGCGCCTTCTTTCTATATAATAAAAGG
TGTGACAGTTTCATTTCAACTcgtatagaaaaaagaaaatatcactCATA
CGTTTTGTTCTAGTTTTCAATTcattt Coding sequence (CDS) from alignment at sc0000066:319407..321533+ >TCONS_00006254 ID=TCONS_00006254|Name=TCONS_00006254|organism=Clytia hemisphaerica|type=CDS|length=2316bp|location=Sequence derived from alignment at sc0000066:319407..321533+ (Clytia hemisphaerica)
TTCCGAGGGTTGCCGAAACCTGATTGGGTGAAACAAGACTCACGCAAGAG
ATATCAAGGACCAACACGAATGAGGGGTTTCATTCAACTTCCCACCATCA
GTAGTGTTATTGTGGAATTTAAAATCGAATCTCAAGGCTGTGAAGATCCT
GGAAAAGTTGGCTGTGGACAAGCGCGAGTTTATTTGAACAATCAGCCACA
AAATCATGCACTCGTTCAAAGAGGATTGAGTTTCGTTACTCTGAACCCCA
CTACAGgagCAATAACTGGCAAACGAGCTTTCGACATCCACGGACACCCA
CATTGTGTTCATCTCTTCAACTGGATCAAAAGTCTTCCGCGAGGCACAAT
CGTATTGGGAGCCGGTCAAGATGAATATGCTCGCTCGTACAATGCCGACT
GTGATAAAGCGCTCGCTCTCATCAACGGTAAAAAACCCGTCAATTTCGGA
TACAGAGGATCTTTTGCAATCGCTGGTTATCGAGGCACACCGAAACCTAG
TTGGGCGAAACAAGATTCGCGACTCAGAGGCAAGGGTCCAACATTCCTTC
AAGGTCGAATCGCTTTTCCTGTTGCATAATTCCGAGGGTTGCCGAAACCT
GATTGGGTGAAACAAGACTCACGCAAGAGATATCAAGGACCAACACGAAT
GAGGGGTTTCATTCAACTTCCCACCATCAGTAGTGTTATTGTGGAATTTA
AAATCGAATCTCAAGGCTGTGAAGATCCTGGAAAAGTTGGCTGTGGACAA
GCGCGAGTTTATTTGAACAATCAGCCACAAAATCATGCACTCGTTCAAAG
AGGATTGAGTTTCGTTACTCTGAACCCCACTACAGgagCAATAACTGGCA
AACGAGCTTTCGACATCCACGGACACCCACATTGTGTTCATCTCTTCAAC
TGGATCAAAAGTCTTCCGCGAGGCACAATCGTATTGGGAGCCGGTCAAGA
TGAATATGCTCGCTCGTACAATGCCGACTGTGATAAAGCGCTCGCTCTCA
TCAACGGTAAAAAACCCGTCAATTTCGGATACAGAGGATCTTTTGCAATC
GCTGGTTATCGAGGCACACCGAAACCTAGTTGGGCGAAACAAGATTCGCG
ACTCAGAGGCAAGGGTCCAACATTCCTTCAAGGTCGAATCGCTTTTCCTG
TTGCATAATTCCGAGGGTTGCCGAAACCTGATTGGGTGAAACAAGACTCA
CGCAAGAGATATCAAGGACCAACACGAATGAGGGGTTTCATTCAACTTCC
CACCATCAGTAGTGTTATTGTGGAATTTAAAATCGAATCTCAAGGCTGTG
AAGATCCTGGAAAAGTTGGCTGTGGACAAGCGCGAGTTTATTTGAACAAT
CAGCCACAAAATCATGCACTCGTTCAAAGAGGATTGAGTTTCGTTACTCT
GAACCCCACTACAGgagCAATAACTGGCAAACGAGCTTTCGACATCCACG
GACACCCACATTGTGTTCATCTCTTCAACTGGATCAAAAGTCTTCCGCGA
GGCACAATCGTATTGGGAGCCGGTCAAGATGAATATGCTCGCTCGTACAA
TGCCGACTGTGATAAAGCGCTCGCTCTCATCAACGGTAAAAAACCCGTCA
ATTTCGGATACAGAGGATCTTTTGCAATCGCTGGTTATCGAGGCACACCG
AAACCTAGTTGGGCGAAACAAGATTCGCGACTCAGAGGCAAGGGTCCAAC
ATTCCTTCAAGGTCGAATCGCTTTTCCTGTTGCATAATTCCGAGGGTTGC
CGAAACCTGATTGGGTGAAACAAGACTCACGCAAGAGATATCAAGGACCA
ACACGAATGAGGGGTTTCATTCAACTTCCCACCATCAGTAGTGTTATTGT
GGAATTTAAAATCGAATCTCAAGGCTGTGAAGATCCTGGAAAAGTTGGCT
GTGGACAAGCGCGAGTTTATTTGAACAATCAGCCACAAAATCATGCACTC
GTTCAAAGAGGATTGAGTTTCGTTACTCTGAACCCCACTACAGgagCAAT
AACTGGCAAACGAGCTTTCGACATCCACGGACACCCACATTGTGTTCATC
TCTTCAACTGGATCAAAAGTCTTCCGCGAGGCACAATCGTATTGGGAGCC
GGTCAAGATGAATATGCTCGCTCGTACAATGCCGACTGTGATAAAGCGCT
CGCTCTCATCAACGGTAAAAAACCCGTCAATTTCGGATACAGAGGATCTT
TTGCAATCGCTGGTTATCGAGGCACACCGAAACCTAGTTGGGCGAAACAA
GATTCGCGACTCAGAGGCAAGGGTCCAACATTCCTTCAAGGTCGAATCGC
TTTTCCTGTTGCATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006254-exon-sc0000066-1491911889:319407..319514 | TCONS_00006254-exon-sc0000066-1491911889:319407..319514 | Clytia hemisphaerica | exon |
| TCONS_00006254-exon-sc0000066-1510915933:319407..319514 | TCONS_00006254-exon-sc0000066-1510915933:319407..319514 | Clytia hemisphaerica | exon |
| TCONS_00006254-exon-sc0000066-1575043694:319407..319514 | TCONS_00006254-exon-sc0000066-1575043694:319407..319514 | Clytia hemisphaerica | exon |
| TCONS_00006254-exon-sc0000066-1491911889:319825..319974 | TCONS_00006254-exon-sc0000066-1491911889:319825..319974 | Clytia hemisphaerica | exon |
| TCONS_00006254-exon-sc0000066-1510915933:319825..319974 | TCONS_00006254-exon-sc0000066-1510915933:319825..319974 | Clytia hemisphaerica | exon |
| TCONS_00006254-exon-sc0000066-1575043694:319825..319974 | TCONS_00006254-exon-sc0000066-1575043694:319825..319974 | Clytia hemisphaerica | exon |
| TCONS_00006254-exon-sc0000066-1491911889:320535..320622 | TCONS_00006254-exon-sc0000066-1491911889:320535..320622 | Clytia hemisphaerica | exon |
| TCONS_00006254-exon-sc0000066-1510915933:320535..320622 | TCONS_00006254-exon-sc0000066-1510915933:320535..320622 | Clytia hemisphaerica | exon |
| TCONS_00006254-exon-sc0000066-1575043694:320535..320622 | TCONS_00006254-exon-sc0000066-1575043694:320535..320622 | Clytia hemisphaerica | exon |
| TCONS_00006254-exon-sc0000066-1491911889:320955..321533 | TCONS_00006254-exon-sc0000066-1491911889:320955..321533 | Clytia hemisphaerica | exon |
| TCONS_00006254-exon-sc0000066-1510915933:320955..321533 | TCONS_00006254-exon-sc0000066-1510915933:320955..321533 | Clytia hemisphaerica | exon |
| TCONS_00006254-exon-sc0000066-1575043694:320955..321533 | TCONS_00006254-exon-sc0000066-1575043694:320955..321533 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000066 | supercontig | sc0000066:319407..321533 + |
Blast
The following BLAST results are available for this feature:
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