TCONS_00006253 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006253
Unique NameTCONS_00006253
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length917

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006253 ID=TCONS_00006253|Name=TCONS_00006253|organism=Clytia hemisphaerica|type=transcript|length=917bp
CTGAAACTTTCATTTTTGTTCCCTTATGACGAAATTTTGAATCCCTCggg
attctttttttttttaatttttatttttggtacCTTTAGACGAGTTTTAG
CGCAAAAAGAGGGAAgattaaaatctaattttacaattgggcctatgagt
AACGCCGAGGATACTGAAGTTGGGCCATTGGGGATATACCCGTTcggttt
tgagaaaaatgatttttaaccTATAAGCAAAGAGCTTTATATTATGAAAT
CCAAAGAGGGTACCACTGATACAGGGATGTTAGCTTTTTTTATGTTACAT
AATCTCTTAATTCAACGCAAGAAAATATTTCCGCTCTTCTCCAGATCCCT
TTCTtcttgaataaagaaatatgaaaaataagcgctccattttgtttgtt
ttagctTTGCATGTTTGCATTGTAGATAAACAATTGTTGTTTCGTGCTAT
AAAATGGGTGTTCCGAATCACCATCCCCATCAGTTGTTCAATATAAACAT
AATCGAGCAAGATGAAGCTGTTACTATTTTGCTTGCTGCTTTTTGTGGCG
GCGTCCAGAGgTGAAGAGAAGAGTTCAAATGTTGTAGATTCTGATTTTGC
ATTCGATGCACGTTATGAAATCGAGGCTGAGAAGAATGATATTTTGGACG
AAGTTGAAGAGGATGAggttttgaatgaaaatgaagacattgatGATGAA
GATGTGAGAGATTTggatgaagaagatgaagatgaagatgagatAGAAGA
TGATGTGGAGCTTGATGAGGATGAAACTGATGAACTCCAAGAATATGAAG
AAGCTCCTCTTCAAGATCCAGCACCATTATTCATTCGAATTCCCACTCCG
AGAATTCCAATTCCAAGAATTCCTACTCCGAGAATTCCCACTCCGAGAAT
ACCCACTCCGAGAATNN
Run BLAST on NCBI

protein sequence of TCONS_00006253-protein

>TCONS_00006253-protein ID=TCONS_00006253-protein|Name=TCONS_00006253-protein|organism=Clytia hemisphaerica|type=polypeptide|length=135bp
MKLLLFCLLLFVAASRGEEKSSNVVDSDFAFDARYEIEAEKNDILDEVEE
DEVLNENEDIDDEDVRDLDEEDEDEDEIEDDVELDEDETDELQEYEEAPL
QDPAPLFIRIPTPRIPIPRIPTPRIPTPRIPTPRX
Run BLAST on NCBI

transcript from alignment at sc0000066:310263..312227+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006253 ID=TCONS_00006253|Name=TCONS_00006253|organism=Clytia hemisphaerica|type=transcript|length=1965bp|location=Sequence derived from alignment at sc0000066:310263..312227+ (Clytia hemisphaerica)
CTGAAACTTTCATTTTTGTTCCCTTATGACGAAATTTTGAATCCCTCggg
attctttttttttttaatttttatttttggtacCTTTAGACGAGTTTTAG
CGCAAAAAGAGGGAAgattaaaatctaattttacaattgggcctatgagt
AACGCCGAGGATACTGAAGTTGGGCCATTGGGGATATACCCGTTcggttt
tgagaaaaatgatttttaaccTATAAGCAAAGAGCTTTATATTATGAAAT
CCAAAGAGGGTACCACTGATACAGGGATGTTAGCTTTTTTTATGTTACAT
AATCTCTTAATTCAACGCAAGAAAATATTTCCGCTCTTCTCCAGATCCCT
TTCTtcttgaataaagaaatatgaaaaataagcgctccattttgtttgtt
ttagctTTGCATGTTTGCATTGTAGATAAACAATTGTTGTTTCGTGCTAT
AAAATGGGTGTTCCGAATCACCATCCCCATCAGTTGTTCAATATAAACAT
AATCGAGCAAGGTAAGTTAATTCTTTTGTGGATCTTTTTTTCtggtgaaa
tttttcaattttacgaTTGTGCATGAAAGTGATATTCTAACATTCGCATG
CATCAACTGCAGCCATCTTACCGCACATTTTTATTCCTTGGATATGAAGT
CTGACTGAAGTTCATCTTTTTTGTCCAGTCTACTTTAATTTCATTAGGAC
TAAGACATTTGATTGGATTGGGAATTATAAATATGAGTGAAATAAATAGG
AATATAATTCTGAGTAATTCACCTGATGATAGGTGAGGGTTTTACTGCAG
AGTTTTATTTGTAATTAACGCATCCCCAAATCAAGGTTAATTCCTAATTT
TTACTCTTTGCATTTCCAGATGAAGCTGTTACTATTTTGCTTGCTGCTTT
TTGTGGCGGCGTCCAGAGGTGAGCCAAAATCTTCCACGATACGAAATTCA
CATGTCAAAATAGAAATATAGAAATTTCTAATACTTTCAATTGACTTTCT
TTAGAGTCTTAGAGGGCTATCTTATCAATTTTTAATCGTGAAATAAAATT
GGTTTTGAATATCGTTATTTTTGACTAATCTCCACCCCCAAAGCCGCTTG
CAccagttttttattttagtgatgGACAGATAAACAGATTAAAAGCTTTT
GTCATAAAAAGGCAAAtaaagggactgggttcgagtttgattCAATGCCT
GATATTTCTCTCACATTTAATTGAGGTTctcaaaacacttttttcaggTG
AAGAGAAGAGTTCAAATGTTGTAGATTCTGATTTTGCATTCGATGCACGT
TATGAAATCGAGGCTGAGAAGAATGATATTTTGGACGAAGTTGAAGAGGA
TGAggttttgaatgaaaatgaagacattgatGATGAAGATGTGAGAGATT
TggatgaagaagatgaagatgaagatgagatAGAAGATGATGTGGAGCTT
GATGAGGATGAAACTGATGAACTCCAAGAATATGAAGAAGGTAGGAATGA
AGTTCCTTTCTAGAAATCACTGGTTAGCGAAACTTTGTGACTGTAACTTC
GTTTTATAAGAATCGCAAGGCTCAAATTTGAAAgtcttttcttttgatat
tgcTGATCCACAAAACTTTGTTCAATTATTTCTTCAGTCAGTGGGAAAGA
GTCGACATTGTCTTCCACTTTTTCACATGTCTTACTCAGAGAgattatca
aaattttctctaacAATAGATGATGCAGTAGAGTCAAAATTCAAACTGAA
GTATTTTCCCGCCTTATGCTTTTAGAAATAGTCTGGGTATCAGCGTTATA
TCTTCAGGATTTACGTATttcaaataaattattttttcatccaTTTTTCA
GCTCCTCTTCAAGATCCAGCACCATTATTCATTCGAATTCCCACTCCGAG
AATTCCAATTCCAAGAATTCCTACTCCGAGAATTCCCACTCCGAGAATAC
CCACTCCGAGAATNN

Coding sequence (CDS) from alignment at sc0000066:310263..312227+

>TCONS_00006253 ID=TCONS_00006253|Name=TCONS_00006253|organism=Clytia hemisphaerica|type=CDS|length=1215bp|location=Sequence derived from alignment at sc0000066:310263..312227+ (Clytia hemisphaerica)
ATGAAGCTGTTACTATTTTGCTTGCTGCTTTTTGTGGCGGCGTCCAGAGg
TGAAGAGAAGAGTTCAAATGTTGTAGATTCTGATTTTGCATTCGATGCAC
GTTATGAAATCGAGGCTGAGAAGAATGATATTTTGGACGAAGTTGAAGAG
GATGAggttttgaatgaaaatgaagacattgatGATGAAGATGTGAGAGA
TTTggatgaagaagatgaagatgaagatgagatAGAAGATGATGTGGAGC
TTGATGAGGATGAAACTGATGAACTCCAAGAATATGAAGAAGCTCCTCTT
CAAGATCCAGCACCATTATTCATTCGAATTCCCACTCCGAGAATTCCAAT
TCCAAGAATTCCTACTCCGAGAATTCCCACTCCGAGAATACCCACTCCGA
GAATNATGAAGCTGTTACTATTTTGCTTGCTGCTTTTTGTGGCGGCGTCC
AGAGgTGAAGAGAAGAGTTCAAATGTTGTAGATTCTGATTTTGCATTCGA
TGCACGTTATGAAATCGAGGCTGAGAAGAATGATATTTTGGACGAAGTTG
AAGAGGATGAggttttgaatgaaaatgaagacattgatGATGAAGATGTG
AGAGATTTggatgaagaagatgaagatgaagatgagatAGAAGATGATGT
GGAGCTTGATGAGGATGAAACTGATGAACTCCAAGAATATGAAGAAGCTC
CTCTTCAAGATCCAGCACCATTATTCATTCGAATTCCCACTCCGAGAATT
CCAATTCCAAGAATTCCTACTCCGAGAATTCCCACTCCGAGAATACCCAC
TCCGAGAATNATGAAGCTGTTACTATTTTGCTTGCTGCTTTTTGTGGCGG
CGTCCAGAGgTGAAGAGAAGAGTTCAAATGTTGTAGATTCTGATTTTGCA
TTCGATGCACGTTATGAAATCGAGGCTGAGAAGAATGATATTTTGGACGA
AGTTGAAGAGGATGAggttttgaatgaaaatgaagacattgatGATGAAG
ATGTGAGAGATTTggatgaagaagatgaagatgaagatgagatAGAAGAT
GATGTGGAGCTTGATGAGGATGAAACTGATGAACTCCAAGAATATGAAGA
AGCTCCTCTTCAAGATCCAGCACCATTATTCATTCGAATTCCCACTCCGA
GAATTCCAATTCCAAGAATTCCTACTCCGAGAATTCCCACTCCGAGAATA
CCCACTCCGAGAATN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003574XLOC_003574Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006253-exon-sc0000066-1491911889:310263..310773TCONS_00006253-exon-sc0000066-1491911889:310263..310773Clytia hemisphaericaexon
TCONS_00006253-exon-sc0000066-1510915933:310263..310773TCONS_00006253-exon-sc0000066-1510915933:310263..310773Clytia hemisphaericaexon
TCONS_00006253-exon-sc0000066-1575043694:310263..310773TCONS_00006253-exon-sc0000066-1575043694:310263..310773Clytia hemisphaericaexon
TCONS_00006253-exon-sc0000066-1491911889:311132..311180TCONS_00006253-exon-sc0000066-1491911889:311132..311180Clytia hemisphaericaexon
TCONS_00006253-exon-sc0000066-1510915933:311132..311180TCONS_00006253-exon-sc0000066-1510915933:311132..311180Clytia hemisphaericaexon
TCONS_00006253-exon-sc0000066-1575043694:311132..311180TCONS_00006253-exon-sc0000066-1575043694:311132..311180Clytia hemisphaericaexon
TCONS_00006253-exon-sc0000066-1491911889:311510..311752TCONS_00006253-exon-sc0000066-1491911889:311510..311752Clytia hemisphaericaexon
TCONS_00006253-exon-sc0000066-1510915933:311510..311752TCONS_00006253-exon-sc0000066-1510915933:311510..311752Clytia hemisphaericaexon
TCONS_00006253-exon-sc0000066-1575043694:311510..311752TCONS_00006253-exon-sc0000066-1575043694:311510..311752Clytia hemisphaericaexon
TCONS_00006253-exon-sc0000066-1491911889:312114..312227TCONS_00006253-exon-sc0000066-1491911889:312114..312227Clytia hemisphaericaexon
TCONS_00006253-exon-sc0000066-1510915933:312114..312227TCONS_00006253-exon-sc0000066-1510915933:312114..312227Clytia hemisphaericaexon
TCONS_00006253-exon-sc0000066-1575043694:312114..312227TCONS_00006253-exon-sc0000066-1575043694:312114..312227Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006253-proteinTCONS_00006253-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000066supercontigsc0000066:310263..312227 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.150329	0.19546	0.0567369	0.111016	0.270304	0.213597	49.7354	56.2721	210.204	143.366	281.762	296.818	93.914	86.1439	62.5704	81.8046	22.8337	22.4784	13.6898	11.9843	0.775184	0.779847	0.172365	0.261174	0.322804	0.0960316	0.687105	1.90657	0.333708	0.28333
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006253 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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