TCONS_00006235 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006235
Unique NameTCONS_00006235
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length987

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006235 ID=TCONS_00006235|Name=TCONS_00006235|organism=Clytia hemisphaerica|type=transcript|length=987bp
ATTCCAGCGAACAGTCAAACTGACACTATTCTTTTTTTACTGTTCAggta
aattaaaaagataagcAATAATAAGAAAATGAAACTGGAATAGAAAATGT
AGGTTTCAAGTTGCCTTGGGCTGCTACTGCAAGGCAACTGTGCCAAGCTC
TTTGGAAATTACATCAATCTTAGCTAAAACAGTTGGCATCAACTCTCATC
TGGATTTTCTTCAACACATTGACTATTTGTTAAATGGGTTATCATACTTA
CAAATTAATAATATGTATAATATGTTTGCTATTATGTTTTGAATGGTGTT
GTGTTGAGGGACTTGCTGTCATATGGGATCCTTATCACCCATTattcTCA
TGCAAGGATCCTGTCGTAAATGTGAAAGAAACTGATTTGTTGAAATTTGT
ATGCCCAGATAAAGATATCTCGTCCAAACCAAATGCACATTCTTCAACCC
TTCATGAAGTAGCTTATCTTCTAGACTACACAAAAGAACAAGATTATGCA
AATTGCGATGCTAGAGATCATCTATCTGTATTACTAAACTGTACAGCCGC
ATATAGAACTACACAACATCGCATCACTCAAAATGCTCTTTCACCTGATG
CACCCTCTTTCACACCTGGAAAGACATATTATGTGATAGcCACAAGCTTT
CAAACATCAAATAACATCAACAATCTTGTTGGTGGTAGTTGTAATTATTC
TCAAGATGGAGCACATaatttgaaactcaaaattcaTGTTTGTGATGGCT
CAGATTCGTCATGCTCTGTGTGTGATAACGAAGCTTGTTTGTACAAAGAT
TGTGGCAAATCATGTGGCAATTGGACCAATGGGTATACTTTCAAACGTGA
TGGAGGATGTTTCAGTGTGGAGAAAAGATTATGCAATAATACTTTACTTG
GTATAACAAATCATGAAGAGCAGAGGGAGGTAGCTTTAGATTGCTATGAA
AATTGCTCAACTTGGGAATTGAATAACTATTTCAAGA
Run BLAST on NCBI

transcript from alignment at sc0000066:262586..269348+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006235 ID=TCONS_00006235|Name=TCONS_00006235|organism=Clytia hemisphaerica|type=transcript|length=6763bp|location=Sequence derived from alignment at sc0000066:262586..269348+ (Clytia hemisphaerica)
ATTCCAGCGAACAGTCAAACTGACACTATTCTTTTTTTACTGTTCAggta
aattaaaaagataagcAATAATAAGAAAATGAAACTGGAATAGAAAATGT
AGGTTTCAAGTTGCCTTGGGCTGCTACTGCAAGGCAACTGTGCCAAGCTC
TTTGGAAATTACATCAATCTTAGCTAAAACAGTGAGTAGAATTACCTCGA
CTTTAATTATCTCTCCTCATAATTTTATTGCTTAATTCTTTTCATCTCCA
TTGCCAACTTTAATTAGTCTGTTTAATGACTTGTATACATGATTCATTTT
TGACTGTCTCTGTGAGTTTGAGAAAAAGTCTATATTTGTCCTAGTGTAAC
ACGAAAGAGTTTTATAAATTTAGGGTGttgaataatgtttttttttcgat
tttttttcgctAAATACAAatgattaaaatttttgtttgtttacttcCCG
GTCCAACCTTGCTATCAGTTTCGACCCtctgaaaaatttttgatttataa
atttATCTTGCTTTTTTGTCAATTACTACGTCAATACTTTATCTATACTA
TTTCAAAGACTGCCTTTTCATTCTCCCGTGATATACCTatgtttcttatg
aaaaaatcattgagTTACTAATAGTAAGATGACATTTATGAAATACTTTT
AATCATtaataataacaaaaaagtATGACTTTTAGATGATACATTAAGTC
ACATTTaaatgaaatcaacatcaataaatactttttttaataattttgtc
AGGTTGGCATCAACTCTCATCTGGATTTTCTTCAACACATTGACTATTTG
TTAAATGGGTTATCATACTTACAAATTAATAATATGTATAATATGTTTGC
TATTATGTTTTGAATGGTGTTGTGTTGAGGGACTTGCTGTCATATGGGAT
CCTTATCACCCATTGTAAGTATTAACATTAGGTAATGTTCATGCCCCTTT
GAACTATTTAGAAATACTTGGATTTTTTCATCTTGATGGTTCTTAGAAAA
TAGCTAGTTAGGGTCCATCAGTTCTCCCTTGCTTTCCAGATTACCTCTAG
GGCAAAAAGGTAATAGGTAGATTATCGATGGCAAGCATACAGCATATCAT
TGGAGACTTTTGCTAGAATGAATTCCACTTTTGGTTGACCAAATATTCTG
ATTTCTGCTCGGGTAGCCATTATccctttctttatttttctttcagattc
TCATGCAAGGATCCTGTCGTAAATGTGAAAGAAACTGATTTGTTGAAATT
TGTATGCCCAGATAAAGATATCTCGTCCAAACCAAATGCACATTCTTCAA
CCCTTCATGAAGTAGCTTATCTTCTAGACTACACAAAAGAACAAGATTAT
GCAAATTGCGATGCTAGAGGTATCAAATTGTGTATTGAAAGAATAAGGTT
TTTCTGCTTCAAGAAGAAGAAACTACCCTGAAGGAACTATTTTCGTGGAG
AATTATTTTTGGAGGATACCACCCAAGTTAGACTTCATTTCGAAATAGAA
ATTTAACAAGCAtaactttcttcttcttcttataatcattttctgggaaa
tttaaaatttcaactaTTGCCTTATCTCCCCTGATTTTGGTTTGAATCTC
ATCACTCCAACAAGTGTGCTAAATGAATCAATATTATTTTGACACTACAA
TGCATGATaataatgtcttcttttttcatatCTAGATCATCTATCTGTAT
TACTAAACTGTACAGCCGCATATAGAACTACACAACATCGCATCACTCAA
AATGCTCTTTCACCTGATGCACCCTCTTTCACACCTGGAAAGACATATTA
TGTGATAGGCAAGGGAAAGTTTTATTCATGTCTTGTGTAGGCCATTCATA
AGGGTGTTTACATCCCTCATGGCGACTGAGTATCGGAAATTAGCCCCTTT
TTATCATGGTACgcagaattcaaaaaaaatcttgacAGAATCGAGAAAAT
TTAGGCCTGCTCTTTTAGACAGAAAATTAGGCTTTTAGGCCGGATGATTT
GGATGATAAATTTCGTCATTTTGCATTGTATGGTCAAATCCTTTCTTGTC
AAAGAAATTATCGATGGTAAAATTTTGGTTTTCATTAAATGATAACCTGG
CAGAAATTGGGGAAAAATGATAAATGGTGGAAGAAGATACCCTCTGAAGC
CTCCCTCATGCTCCCTGCTATCTAAAGTACTCATTACAggaacttttttt
tctatttctagcCACAAGCTTTCAAACATCAAATAACATCAACAATCTTG
TTGGTGGTAGTTGTAATTATTCTCAAGATGGAGCACATaatttgaaactc
aaaattcaTGTTTGTGATGGCTCAGATTCGTCATGCTCTGTGTGTGATAA
CGAAGCTTGTTTGTACAAAGGTAATagtgggctattccagaaaaaaaata
tactccctatgttgaggagatctATTTCAGGAAAGGTGACCCCTggattt
cttttaaatttttcaggaccccGTTGGATTTGTTTTCccattttttggac
caccctgtaTTTTCGAGCTTGTTTTACTGACtctggattttcaacctcat
tttactgacagATTTTTACACTCAAAAAGCCAGaccttcttttgattttt
ttattttccaagcCACTCTGGTCGTCACATCTCTTCAACATAAGGAGtgc
agactatttctggaatagttTCTGGAATAATTTAAAAGAAACTTTTATGG
ATATAAAAGCTGTCCGTTTTACGTTGAATCTAGACCAAAtcagttctttt
aaaaatctaagccattttttatcaaaatattcttCGTCCTTCATGGCtac
atcaatttttcaataatccTTATGTAATTGTTGTGACGAGATCGTATGTT
TTTATACCTTGTGTTGACAATAATCCACCCTTCGAATCCTTTTTCAGATT
GTGGCAAATCATGTGGCAATTGGACCAATGGGTATACTTTCAAACGTGAT
GGAGGATGTTTCAGTGTGGAGAAAAGATTATGCAATAATACTTTACTTGG
TATAACAAATCATGAAGAGCAGAGGGAGGTAGCTTTAGGTAAACCATTTT
ACTCAGATTTATTTGTTTCACCTTAACAGAGGGTTTTGACATCCTcttaa
ataaaatcttttaaggaggtgtttgaaaaaatgcaaatttttattttaac
cttTCTGGCAAGTAAAAAGGTATGGTTTAAAAACTGTTTagcattttttt
tctaaatgaaTTCCTGGGAAAGATGTAAATTAATGATACCAGCCGTGGCA
TTATTGAAAAGGTCTGCTCCTCGATTACAACATGACACAAGCTTTTTTTA
ACCACAAGTGATCAGGGGCTATGACCTACAGTGTTTCATATGGTAAAAAT
GAGCTATAATCTATTTGTCCATTTTTTACGAATAACTTTAAGGTATATAA
TTATATAAATATGTATAAATCTAAAATGTCCGAAACCCATACAAAGTGCT
CCAAGCAATAGATTTCTTTTCCAGATTGCTATGAAAATTGCACAACTTGG
GAATTGAATAACTATTTCAAGAAGAATGACTTGTGTTATGTTTCACAACT
TCGTTACTGTAACGACTCTGTCAATAAAGATTGGAATAAAGTTAATTATC
GTGAATTTAAACTAGGTATGGTTTAACTTTGATTTAAATTTAATAAAGGA
TTAAATAGAGTGccaaacttgatttttttttaattggccATGTTATTCAA
AAACATAGTGTtaaattttttgaacttttttattgttaaaactctaaaga
aaaacgttttcttttatttcagcaaaagatttttggtaaaaaacCTGATG
CTAGATGTTTAAAATTAGAtggaattcaaaaaaatttattcattttttgt
gacgtatttgtggtaaaaaatctgaaaaagttaggtaaattcaaaagctt
ttactgaaatgaaataaaagttattttttactCATAACTTTCTGGAATGG
CtgatttaaaccaaaatatataaaaactgTTAACTTGTTCAATTGCATTT
ACTTTAAAACCAATCCTAAACTTCACATTTCACAGATTGCTACACCAATT
GCACAGAGTGGGGGACTAGTAAccatttcaagaaaaataatttatgtttt
GTAACGCAAAGACGTTTTTGTAATGACACTTTCactaatcaaataaacaa
agttGAATATCATGAAATTCAGCAAGGTAAAATTAAAGTTTAGATATAAT
TAATCATGAAGATTTTGATTACTTTATCTGTTATTAACCTTTTAACCTAT
TAAAACATTATAAATTGTCTCGCAAACACGATTAAAGTCAACTGCAGGCC
TCCCAGCCGTCCTGTATTTCCTGTATTTCATGTATTCTgatattttccta
tttttttcctgttttttccTATATTTCATCAAATATTCCTGTATTTTCCT
GTATTTTCAGACCAGCTTTAGCCAAAAGTTTTAATTTAAATCAACGAAGC
CTGTCACAAATCTCTGCATCGTTACATTGGAATCTCTTTCAGTTTTAAAC
AGTTAAACTAACAGTTCACCACTCATTTACCATTAAATTTTGAACAGTCT
TTTTATAgcctttgcttgttttttagaTTACTAAAAAGAAATGACTAAAC
AAAGTATAATAAATCATGGGAGGAAAGTCATGACTGGCTAGGTCAAGTGA
AGGAGGATAAGCGCTCAGCTAGATGTAATATTTGTAataaagttttcaaa
tgtagcAATGGTGGAATTTCAGATGTtcatttgtgagtggaacaatttaa
aatcaaaaagtcttttaaaaaattctaaaaatgaagatgaaaatgaagaa
gaaaaaaatgaagatcttgtagaaaagtgctataaccaTCATTTTCACTT
aagtgaatccttaatcatcgaacgtcatcactgtgaaaaaatttctagaa
aataataattcagtcaaaagatatcaaacaaagctataagctgattgacg
tctaaaaaccctgttttctgctgttttctgctgttttttggggttaatca
cttattaactttgtatcataactttatattgaataaatatttcagtgaaa
ttttttcacactgatgacctcctaagatcaaagaatctctccagtgaaaa
tgaaagttatagcacttttatacaagatcttcatttttttcttcttcatt
ttcatcttcatttttggattttttaaaagactttttgattttaaattgtt
ccactcacaaatatctctccaacgataccaaatttatgaagattgaagaa
ttccttcaaaagttataggtaaaagagaaaagagtgcacacttatcgtga
acagactttagaagCTATCACTAAAACTAAGAACATAAACAGAGATGAAC
TAATCAGTGCTCAAACTAAAATAAGTATGGGATTGAAAAGAAAACCAGAA
CTTTCATTGGAATTGAGTGAAGTAGAGAAAAAGATGAAGACTTGAACTGT
CTGAACTCTTCTTCTCGTCgttattttgtttgtatttgCTTTTTTAGTTG
ATATTTGTTGTCAGGTTTTAGGTAAAGTAAGACTAGCGTGAATATACTCT
AGAACTGTCACATTTTATTCAGATTTGTTTGTTCTATTTTCGCCTCATTT
ACATGATGGTACTTTGATACTTATTAATATTTTTGGCTTTTTACCCGTTC
TCACTGCTTAAGATTCAGTCATTTTAGGCGTAGCTCTTTAATTgcactta
ttttttttttttttttagcctCCTTGatcttaaaaaaattgttcttataa
aaaagatcttcctcaatgaaatcatgaactCCAACCAAGTTGTTGTTAAT
ATCTTTCACTAGCtttaggctggacttaaaaaattgttggtttgccgtca
cccgaccgaccctacctcgaaacctgccgacccaaaaaaatttattgcca
ttttaaagacgatttgttttccttcaaaaacttcaaacaataaaaaatca
aaactcgtatcttgtttgtctcaagcaaaaatcgtaaattccctgctagc
gcTCTTCTgttttccattcaaaattacctaaatgtaaacaagctgttaac
ccttccatggactaaaatttcataaatcgccaaaataaaaaagaattccG
AGCGActgacccacctccaaaatctagggtcgggtgacggcaaaccaaca
attttttaagtccagccttacTATTATAGTATATTGATTTACCGATTTTT
TAGGGCTGTTTTATACATGAAAGTGCTGAGAAAGTCCTgtattttgattg
aaagaatTGGAAAATCCTGTTTTTTTGATACGATTTGTCCTGtattttcc
tgtatttttgaattttttcgtCCTGTATTCCTGTTTTATTTTACATAATT
GAGGCTGGGAGGCCTGCAACTGGATTAAacccttttttcaattttttgcc
atATATTTGGCTTCATTGCAGATTAAACTAAAGAGAAGTCGTTCTTTCAA
ATTTCAACTGTTTCTATTCAaccttttgctttttttttaaccaaaagtgA
TCAGTGATCAGGGGCTGTAACCTAAAGTGTTTCATATGGCTAAAAATGAG
CTTTTCAGAGTTGAAACATCACACTCGGGGTCAAATTAAGGGttagaaat
ctattttttcgtttttttacgAATAACTTTAAAGTTTGAGATTATTTGAA
TATGTAAAGATTTAAAAACTATAAAACCCATACAAAGTGCTCCAAGCAAT
AGATTTCTTTTCCAGATTGCTATGAAAATTGCTCAACTTGGGAATTGAAT
AACTATTTCAAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003571XLOC_003571Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006235-exon-sc0000066-1491911889:262586..262766TCONS_00006235-exon-sc0000066-1491911889:262586..262766Clytia hemisphaericaexon
TCONS_00006235-exon-sc0000066-1510915933:262586..262766TCONS_00006235-exon-sc0000066-1510915933:262586..262766Clytia hemisphaericaexon
TCONS_00006235-exon-sc0000066-1575043694:262586..262766TCONS_00006235-exon-sc0000066-1575043694:262586..262766Clytia hemisphaericaexon
TCONS_00006235-exon-sc0000066-1491911889:263338..263499TCONS_00006235-exon-sc0000066-1491911889:263338..263499Clytia hemisphaericaexon
TCONS_00006235-exon-sc0000066-1510915933:263338..263499TCONS_00006235-exon-sc0000066-1510915933:263338..263499Clytia hemisphaericaexon
TCONS_00006235-exon-sc0000066-1575043694:263338..263499TCONS_00006235-exon-sc0000066-1575043694:263338..263499Clytia hemisphaericaexon
TCONS_00006235-exon-sc0000066-1491911889:263782..263954TCONS_00006235-exon-sc0000066-1491911889:263782..263954Clytia hemisphaericaexon
TCONS_00006235-exon-sc0000066-1510915933:263782..263954TCONS_00006235-exon-sc0000066-1510915933:263782..263954Clytia hemisphaericaexon
TCONS_00006235-exon-sc0000066-1575043694:263782..263954TCONS_00006235-exon-sc0000066-1575043694:263782..263954Clytia hemisphaericaexon
TCONS_00006235-exon-sc0000066-1491911889:264271..264393TCONS_00006235-exon-sc0000066-1491911889:264271..264393Clytia hemisphaericaexon
TCONS_00006235-exon-sc0000066-1510915933:264271..264393TCONS_00006235-exon-sc0000066-1510915933:264271..264393Clytia hemisphaericaexon
TCONS_00006235-exon-sc0000066-1575043694:264271..264393TCONS_00006235-exon-sc0000066-1575043694:264271..264393Clytia hemisphaericaexon
TCONS_00006235-exon-sc0000066-1491911889:264797..264955TCONS_00006235-exon-sc0000066-1491911889:264797..264955Clytia hemisphaericaexon
TCONS_00006235-exon-sc0000066-1510915933:264797..264955TCONS_00006235-exon-sc0000066-1510915933:264797..264955Clytia hemisphaericaexon
TCONS_00006235-exon-sc0000066-1575043694:264797..264955TCONS_00006235-exon-sc0000066-1575043694:264797..264955Clytia hemisphaericaexon
TCONS_00006235-exon-sc0000066-1491911889:265483..265623TCONS_00006235-exon-sc0000066-1491911889:265483..265623Clytia hemisphaericaexon
TCONS_00006235-exon-sc0000066-1510915933:265483..265623TCONS_00006235-exon-sc0000066-1510915933:265483..265623Clytia hemisphaericaexon
TCONS_00006235-exon-sc0000066-1575043694:265483..265623TCONS_00006235-exon-sc0000066-1575043694:265483..265623Clytia hemisphaericaexon
TCONS_00006235-exon-sc0000066-1491911889:269301..269348TCONS_00006235-exon-sc0000066-1491911889:269301..269348Clytia hemisphaericaexon
TCONS_00006235-exon-sc0000066-1510915933:269301..269348TCONS_00006235-exon-sc0000066-1510915933:269301..269348Clytia hemisphaericaexon
TCONS_00006235-exon-sc0000066-1575043694:269301..269348TCONS_00006235-exon-sc0000066-1575043694:269301..269348Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000066supercontigsc0000066:262586..269348 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.475805	0.934322	0.197938	1.19533	37.8567	34.436	9.42854	6.63857	17.0643	12.6883	10.8647	13.9724	7.6975	5.50795	5.47881	5.87212	4.32867	9.67353	2.62202	16.1768	6.22033	4.9037	3.00681	4.71398	9.98569	6.9484	2.54468	3.99388	0.853323	4.08602
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006235 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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