|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006219 ID=TCONS_00006219|Name=TCONS_00006219|organism=Clytia hemisphaerica|type=transcript|length=4272bpRun BLAST on NCBI protein sequence of TCONS_00006219-protein >TCONS_00006219-protein ID=TCONS_00006219-protein|Name=TCONS_00006219-protein|organism=Clytia hemisphaerica|type=polypeptide|length=723bp MAEGGNVTEEDVGQVNARNIFGDPSDSYLMKDVSDIELHLGELDITSQDERun BLAST on NCBI transcript from alignment at sc0000066:130106..144600+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006219 ID=TCONS_00006219|Name=TCONS_00006219|organism=Clytia hemisphaerica|type=transcript|length=14495bp|location=Sequence derived from alignment at sc0000066:130106..144600+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000066:130106..144600+ >TCONS_00006219 ID=TCONS_00006219|Name=TCONS_00006219|organism=Clytia hemisphaerica|type=CDS|length=45612bp|location=Sequence derived from alignment at sc0000066:130106..144600+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00006219 vs. Swiss-Prot (Human)
Match: VPS52 (Vacuolar protein sorting-associated protein 52 homolog OS=Homo sapiens GN=VPS52 PE=1 SV=1) HSP 1 Score: 870.152 bits (2247), Expect = 0.000e+0 Identity = 414/687 (60.26%), Postives = 546/687 (79.48%), Query Frame = 2
Query: 1667 LHLGELDITSQDEHVLDELDEFIQRNLEDNLVKEALNKGVDLRQYSKQIETDLREVEDDSIQDYIKESKNIANLHQQIKACDGILETMENMLSGFQIDLKSISAEIQTLQEQSLRMNIKLKNRQAIKSELSQFIDELIVPESMIYAINDLQPTEQTFIEQLHELSHKINIVKEQGFKGAMACNDVRDVLEKLKLKAVSKIREFVLQRVYQCRKPMSNYQVPQNALLKYRYFFEFLLMHHQQVAREIRDEYVDTMSKIYSAYFGGYIAKLMKLQYEELAGKDDLMGVEDTAKARGFFSSKTPLKNRSTIFSLGSRGQVLTDL-LEEPIIVPHAAQKTEKRYSYEALFRSQHFALLDNACREYLFLCDFFLVSGNQATKLFVSVMGKVITVFNKHMTSYIATCYDAIAIFLCIHIIHRYKIIMLKREVPILEKYWDTLLDSLWPRFMKMVELNAQSVKQTDPQKLGNIDIQPHYITRRYAEFSGAINSLNESFPDERVLKCLGKLQREVESFILRRASEFVKRKDHLVFLINNYDMMIQVIQERTTDDSKESDSFQQTLNTKIQEYIEEVLSPYFGGMMTFVKETEPMIERGQAQSIRVNEGQVTQLVRDFAVRWKAAIEGMNSELMRSFSNFKNGTXXXXXXXXXXXXYYHRFQKILSQPPFSRLACRTELINIHHVMVEVKKHKTAF 3724
L LGELDITS DE +LDE+D IQ NLED LVKEAL GVDLR YSKQ+E +L+++E SI+DYI+ES+NIA+LH QI ACD +LE ME ML FQ DL SIS+EI+TLQEQS MNI+L+NRQA++ +L + +D L+VP +++ AI + TE F+EQL EL K V+EQ +G AC DVR VL++L++KAV+KIREF+LQ++Y RKPM+NYQ+PQ ALLKYR+F++FLL + + A+EIRDEYV+T+SKIY +Y+ Y+ +LMK+QYEE+A KDDLMGVEDTAK +GFFS K L++R+TIF+LG+RG V++ LE PI+VPH AQ+ E+RY +EALFRSQH+ALLDN+CREYLF+C+FF+VSG A LF +VMG+ +++ KH+ SY+A CYDAIA+FLCIHI+ R++ I KR+VP L++YW+ +L LWPRF ++E+N QSV+ TDPQ+LG +D +PHYITRRYAEFS A+ S+N++ P+ER ++ LG+LQ EVE+F+LR A+EF RK+ LVFLINNYDMM+ V+ ER DDSKE +SFQQ LN + QE+IEE+LSP FGG++ FVKE E +IERGQA+ +R E +VTQL+R F WK+++E ++ ++MRSF+NF+NGT I+QGAL QLIQ YHRF ++LSQP L R ELINIHH+MVE+KKHK F
Sbjct: 40 LQLGELDITS-DEFILDEVDVHIQANLEDELVKEALKTGVDLRHYSKQVELELQQIEQKSIRDYIQESENIASLHNQITACDAVLERMEQMLGAFQSDLSSISSEIRTLQEQSGAMNIRLRNRQAVRGKLGELVDGLVVPSALVTAILEAPVTEPRFLEQLQELDAKAAAVREQEARGTAACADVRGVLDRLRVKAVTKIREFILQKIYSFRKPMTNYQIPQTALLKYRFFYQFLLGNERATAKEIRDEYVETLSKIYLSYYRSYLGRLMKVQYEEVAEKDDLMGVEDTAK-KGFFS-KPSLRSRNTIFTLGTRGSVISPTELEAPILVPHTAQRGEQRYPFEALFRSQHYALLDNSCREYLFICEFFVVSGPAAHDLFHAVMGRTLSMTLKHLDSYLADCYDAIAVFLCIHIVLRFRNIAAKRDVPALDRYWEQVLALLWPRFELILEMNVQSVRSTDPQRLGGLDTRPHYITRRYAEFSSALVSINQTIPNERTMQLLGQLQVEVENFVLRVAAEFSSRKEQLVFLINNYDMMLGVLMERAADDSKEVESFQQLLNARTQEFIEELLSPPFGGLVAFVKEAEALIERGQAERLRGEEARVTQLIRGFGSSWKSSVESLSQDVMRSFTNFRNGTSIIQGALTQLIQLYHRFHRVLSQPQLRALPARAELINIHHLMVELKKHKPNF 723 The following BLAST results are available for this feature:
BLAST of TCONS_00006219 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.