TCONS_00006218 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006218
Unique NameTCONS_00006218
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3961

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006218 ID=TCONS_00006218|Name=TCONS_00006218|organism=Clytia hemisphaerica|type=transcript|length=3961bp
tttcagattttatcaaACATGGAATCTCTCCGGACCAGTCTTTTACGACC
AGAAAATTTCCGTTATTACGTCATTGCTAATTTGAATTCGTTGCCGGAAA
ATCCACATCAATATTGGTTGGACCTACATTTCAAAGAATCGAAAAGCATT
CTCGACTTaTTAGCAAAAGTACCACACGATTTGCATTATTTATCCAATGA
ACGTAAACTGAAAGCCATCGGGGTTGGTTCCGTTGAGTCGGCATTCATGT
ATCAAGTATCGCCCGCTGTTGACAGTTACCAACATCCCGATTATCCGGCT
ATTCTTGTCTTCATTGAATATTTGTGCGCTCTAGagGGCCCATTATGGCG
ACAGATCCGAGGGTGTGGATATTCTTACCATTACCGGATGTCGATGTCCC
CTGATACTTCTCAGCTCACGTTCGTTTTGGCTCGTTCAACTCATATCTTT
GCTGCTTACAAAACAGCCAAAGAGATTGTGGATGGTTTCGTTTCCGGAAA
GACGCCTTTCGATGAGTCGCAAGTGGATTCAGCAAGAAGTGGTATTATTT
ATCAACTCATCGCTAAAGAACAGACTATTAGTAGTGCTTCTCTAATGtCA
ATGATCTCAGAATTCAAAGAAATTGATTCAAACTTTCGAAGGGACCTgct
aaaaaagatttcaaatgtTACGATTGACGATTTAAAAATGGTTGGGAAGA
AATATTTCGTTCAACTCTTCGACCCTTCAGTATTCACTGCTACCTTGTGT
TGCCATCCAACCAAGATTGATGAAATCCTCAAATCATTCGGAGAACTTGG
CATCAATTATGAGAAATTGAAGACTTTGGAGGAAGCTTTTCTCAAATAAA
TCATTAGATGGGAATAGGTTTAGGGAGAGTATCACAATTATGTCATGAAC
TTGtagatgtttttaaaatttagtacagTATTTATTAAATTAATTTTGTG
ATGAATGAATGAGTCGCAATAAGATGcaagataaacaaaaacaaatgacG
AGCATTATTTTCGTTTCCTGTGTCATCAATCAAAGTATGAGTGATTTGAA
GTGCTATAAATTTCACCTTTTTacaacttttgttttctttcacttgaAAT
CAAATCTTAAATTGTAATTTGATGTGTGTGACTTTTCggtcaaaaagtat
acaaaatTACCGTCTGCAATGTGTTGAGtaaattttgggaaaagaaAGCA
TGATGTATAAGCTCTTGTTCTTCCTTCACAATTTGTTCTCTGTGTGCTTA
GCAATCAAATGGTATGGCGTAAGTCGACCACCTGTTGGTCATTGCAATGC
AGATTGGTATGAACCATTTGGTGATATCACAAGCGATGCCAACCACTCCA
TCCCTTTTACTAAACGAAATGTCAAAGGACATGAAGAACTTGATGGGAAA
TCAATCATGAAAAATGAAGccacGATATTACAATACTTGGCTGGTCGCTC
CGGAATACAGATTAATACAACTGAAAGCATTCATCTACCGCATATCGCAG
AAATCGAAACAGCTCCTGAAATCGCTATTTCACTGATGATGCATTCTTTC
GTATATAAAAGGAAAGTAGAATCGAACACCTTTTCGGTACAAACTCTATT
GGCGGCTTATGAGGGCGTACAGGCGCTGTGGCGTACTGAGAACAACCAAG
CCATCAATCGAATGGCGGCGCATCTCAGTAAAGAGAGGTTTGTGAAACAT
CAAGAACGTTTTGATGATATCTTGGTTCCCTTGCAATCTACTTTTGTCAG
CTGTTTAAAACATACTGAGCATGGAGAACCTGAAATTCTGAACTGTATTG
AAGAGATGGAATGGTTAAGCAGGCTTTACAAGAACCAACTCATGTTATAT
TACGATAAATTATCTCAGCCTGGTTTCCATCTGAAACATGAAGATATACA
TGATGTAGAAACCAACTTGTTGACGTTTCGCAATTATGTCAATCTTCGAA
TGAAAATCTATCTTGTATTGTTGAGCACACTGAAACAGATTGACGGCAAG
ACATCACGTATCAAACTTGGTTATTTCTCAAATCAACTCATCCAGGAATT
AGGCTTGTACCTCAAATATGTCGAAGCAGCAAATGAAAACATTGAGAATC
TTTATCAAAATGAGCCAGGGTTGAATCTTGATGACCAGCACTGCGTAAAG
AATCCAACTTCGTTTGGACGAGGAGTGGTATgttatttcaatttctgcaa
atctTCACATGAAAAATGTGCTTTCACTGTTAATGTATTTCAGAAAGAAA
ATGTCGAAGGTGCAGTACAGTTTGAAGCTGCAACTAAAGATTCTTTCGAA
GCTGGAAGAATATTTGCAGGAATGAAAGCTACAGATTCTTATAATGATTA
TCATATAGACTTGCAAAAGGCTATTAAGAATCGCTGGGATCGAAAAATGT
CACTTATTGTCAAAACCTGGTCACAAATTCGTGATCGAATCTTAGTCTCC
AATGGGAGGTTTATCAAGGAGGTTAGCAAACAGAATTTTTCCTTTAAGTT
GAAATCCAGCCAAGCAAAGAATGTTAACATTTTGAAAACACAAATTGATG
CAGCGAGATCAAAACGACATGCTGATCAGAAAGATCATGGGTTTGTTAAA
GAAAATTCAAACCATGATGAActgtaatttatatttttagatatatTTTC
CATGTTTCTAGATAGTTTTGAAATAGTGTTTAAAAGCTCATACTCGGGTA
TTACTATAACTCGTTTTTATAAAAGTATTAAAATTTACACTGCAGGTTTT
ATTAAGTGTTagttatttttcagttttgatcGATCGAGAAATGGTGCTCA
AATCAAATTGATGCCTTCTGAATTTGGCAATCAAGATTCTTCGAACGTCT
TTTTGCAGTAGAATGTAAATCAAAGCATCACTAGTATAAGCCAAAGTGTA
AAGTATATAAGTTGATAAAACCAATGGCCAAGATTTTGGTGCATCGAAGT
CAGGATGTAAATCTCTAACGTGGTAAACAAAGTTGAGAAGGTCAGGAAAC
ATcatgaataaaataaaactgaTCACCAACAATGAGATCATCAATAGCGG
TGAAGATCGACTGAAAAGAAATCGGAATGTGAAGTTCCTTCGTATGTCAC
TTTTACTTCGTGTAGCAGGTGGTTTTTGTTtcggatttttttgtttttta
gaatGTATCGATGTCTCTTGTTTGTTGATGTTGTGAGGACACGAATGATG
GAGCgccattttcattttaatgtATTGCTTCAAGATATAAGTGTATGTTA
CCAATGCAATTATTAGAAACGCAAATTCCATTGTCGAGAAGAAATACAGA
TAACAGAATGAAATATGATTAAATTTCGGACTGAATAATATCATCAACAT
GGTGAATGCCAGTGCGCATGCCCATATCACCCATAACGTTAAATTGACAG
CTCGTTGTGTGATGTAATTAGGGTATTGGATGTTGAGTTTCATTTCGGCC
AGTCGGTCTAGTGTGATCAAAATGTTCATACAGTAATATACCAACGAGAA
ACCAGTGTTCTTGATTAAGGTCAAAACATAAATGACCTGGTTGTTATGTG
CGTGGTCATCTAGTACCAGAATCATTGCACTGATGATCAAGCTCAGAAGA
ACCAGGCCCACTTCAGAGAAACTTAATTGTTGAATCAGTTTCAAATGAGT
AGCATTCCTTTGTTTTCGCAGAATCCGTAATGCATATAAACCAATCAAAT
GAACGGTTAAGGGTATAAATCGGACACCTATATTGATTTCTTCGGACACG
TAGAAAACCCTTGTTTGATTGCTAGAcgccatcttcttcttttttctttt
ttcttttttcttttttttaccttttttcctTCATCTGCCGTCCTTCTTTG
ACTNtttcttttttctttttttaccttttttcctTCATCTGCCGTCCTTC
TTTGACTTCTCCTAGTATATTATTTGAGTGTTAAAGCCGAAAAAATTATC
TTCTATTTTAG
Run BLAST on NCBI

protein sequence of TCONS_00006218-protein

>TCONS_00006218-protein ID=TCONS_00006218-protein|Name=TCONS_00006218-protein|organism=Clytia hemisphaerica|type=polypeptide|length=475bp
MMYKLLFFLHNLFSVCLAIKWYGVSRPPVGHCNADWYEPFGDITSDANHS
IPFTKRNVKGHEELDGKSIMKNEATILQYLAGRSGIQINTTESIHLPHIA
EIETAPEIAISLMMHSFVYKRKVESNTFSVQTLLAAYEGVQALWRTENNQ
AINRMAAHLSKERFVKHQERFDDILVPLQSTFVSCLKHTEHGEPEILNCI
EEMEWLSRLYKNQLMLYYDKLSQPGFHLKHEDIHDVETNLLTFRNYVNLR
MKIYLVLLSTLKQIDGKTSRIKLGYFSNQLIQELGLYLKYVEAANENIEN
LYQNEPGLNLDDQHCVKNPTSFGRGVVCYFNFCKSSHEKCAFTVNVFQKE
NVEGAVQFEAATKDSFEAGRIFAGMKATDSYNDYHIDLQKAIKNRWDRKM
SLIVKTWSQIRDRILVSNGRFIKEVSKQNFSFKLKSSQAKNVNILKTQID
AARSKRHADQKDHGFVKENSNHDEL
Run BLAST on NCBI

transcript from alignment at sc0000066:107060..115340+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006218 ID=TCONS_00006218|Name=TCONS_00006218|organism=Clytia hemisphaerica|type=transcript|length=8281bp|location=Sequence derived from alignment at sc0000066:107060..115340+ (Clytia hemisphaerica)
tttcagattttatcaaACATGGAATCTCTCCGGACCAGTCTTTTACGACC
AGAAAATTTCCGTTATTACGTCATTGCTAATTTGAATTCGTTGCCGGAAA
ATCCACATCAATATTGGTTGGACCTACATTTCAAAGAATCGAAAAGCATT
CTCGACTTGTAAGTCTATATTATAGTAAGGTGCCATTTTTAGGGCCCATC
GCAGCAATTTCCGGAGTGGAAATAggaaaatagtcgaacgtgcgcaacgc
actgggctcaacttcagtggcttcaaatcattcataggcccaattgtaga
cccccagatattcacccaatgaacaagtgtgccaaatttcaaccaaatcc
gatcattttggaggcctgtagactgctccaaagctttagcctcgttttgg
cgaaaaactcgtgcccaggccccaaaaatcaaaatttttaaaaatgaaaa
aaatgcccccagatattcacccaaggaacaagtgtgcaaaatttcagcca
aatcgaacaatttttgaagtctccaggctgccccaaggttttagcctcgt
tttggcgaaaaactcgtccccaggccccaaaaatcaaaacttttgaaaaa
tgaaaaaaacacccccagataatCACCCGagaaacaagtgtgccaaattt
cagccaaatcgaacaatttttaaagtctccaggctgccccaaagttttgg
gacatacacacacacagacagacagacacacattctcagattctaactca
actgaagttgagaaaaattttgTGCTCTATCCGACAGGACCAATCATtcg
tttttattttacttttgaaaatccTTGCTATTTTACGCACTTTTTTcgaa
tgagcaaaaaaaaattaaccccAGAAATTGCTGATACGGATCCTAAGGAA
AGGCCAAATACATtcattataaaatatttttgctgtATAATTTACACGCA
ACTTGAAACACAACACAATTAAACTCGATTTAAACGAAGGAAACCAAATT
TGTCtgttatttatttaaaaaaatacgatTTAGGTGAAAAAAACCTAAAT
GTAGAACCAAGCTAAATGAAAGGAAAAGTGAACTGAAATGTTAGGCTTGA
TCcaaatgattgaaaaaattttcataaaatgatTTATTATCTGTGATCAT
TTCTGAGACTTTTCTTatctatcaaaataaaatttatcttttgaagtaaa
gtaagtaagtattacTAAGGCTTAAAACCTAAATATTCCAACCTTCGCCC
CAAGAGAAAagtaatctttaaaattttctttccagaTTAGCAAAAGTACC
ACACGATTTGCATTATTTATCCAATGAACGTAAACTGAAAGCCATCGGGG
TTGGTTCCGTTGAGTCGGCATTCATGTATCAAGTATCGCCCGCTGTTGAC
AGTTACCAACATCCCGATTATCCGGCTATTCTTGTCTTCATTGAATATTT
GTGCGCTCTAGaggtaaataaaatttatttattatttttaaaatattatc
aCAAAGTCATGTTTACTTGTGCTCAAGAATTAGTGCTCATCTCTGCGTTA
TCTTTTAATTTTGGAAGCGGACCAAACTTGTCTTTGTTCTTTGGGACAGA
CTGCAAAATAGGTCTTATTTGACGGGCGTTTTGATTTTTGGATCCGTCAC
TCTTAGATGAGTTTTTGGACTAAAAGGATAGAAAATCTACATCCTTCATG
CATTCGGCCaagtttttcaaataaaaagaacaaataattttaattctttC
ATATTATCATATAATTCTCTTTACCAGGGCCCATTATGGCGACAGATCCG
AGGGTGTGGATATTCTTACCATTACCGGATGTCGATGTCCCCTGATACTT
CTCAGCTCACGTTCGTTTTGGCTCGTTCAACTCATATCTTTGCTGCTTAC
AAAACAGCCAAAGAGATTGTGGTAAGTTGGTTACCTTAATCccattaatt
ttcgcgcatctTGCAATTTCTGAGTGTTTTTGACGATGATTACAGGTAAA
GAGGGCAAAAAACACGTAAAATCAGAACTTTTACTCACTTTAAGTGTGCA
TTTAAGCTAGATTTTACATTCCAGAGNGAAATCGGAACTTTTACTCACTT
TAAGTGTGCATTTAAGCTAGATTTTACATTCCAGAGGCATATTTAACATG
AACCGAGGTCCCATTTTATTATAAGAGCTCTAAGATGAGATTTCTACACG
TTCGGAACGATTGTTGATTCGCGCACCCTTTAATTTTTGCGCGGCCAAGT
GCGAGAAAATAAATGGAATTAAAGTTCGTTCTTGGTTATATGCTCTTTGT
TTGCATAAGTGACGAGTTTTTAGATTTATAGTTTTGAGAACAGACCAGTG
GCTGAAACAATTTGCAACACAGAATTAATAAACTTGCTGATATCTATCTT
GTGCTGGAACATAAGATATTCCTAGCCGGATGTCAAAATTAGGTTTCgtc
aatgttttgaaatttgcacCACTCTTGTATAAGGTTTTTCTATAACAGGA
GATTTGAAAGCTTTCCATTTGCTTAGAGAATCTTCTTCTGCGTGAGATGA
CTTGAAACACAAGTTGAACCATTCTAACTTTGACACTTTACTTCTACTTA
GGATGGTTTCGTTTCCGGAAAGACGCCTTTCGATGAGTCGCAAGTGGATT
CAGCAAGAAGTGGTATTATTTATCAACTCATCGCTAAAGAACAGACTATT
AGTAGTGCTTCTCTAATGGTATGCTAATATAGATATACTCtaatttattt
tgttcttgACCTTTTTCATTGACGACCCAGACCCAGTAAAAGGTTCTCGA
CCAGTAGACAATCAGTAGCGCTTTGACATATTTTTGTTAAAGATTGGTAT
ACTTGGTGATAACGAGTTGTCATTTAGAACATTGCACtctcataaagaat
aaaagactGGAATTGGGTTTTACAACAAGGGTTCTTACCAAACCATGGGA
CAGACACTAAATTGCCATATATGAATTGAACAAGGGCTGGAATAGCTTTC
GTGTTTTAATGACGATGTGTGATAATCAAATGTTTCTCTGCTCTGAATTT
GTTAATAGTGTTGTGGtttcgtttttcttttagtCAATGATCTCAGAATT
CAAAGAAATTGATTCAAACTTTCGAAGGTAAAAATCTAGGGATTATGATG
TAATTGCGCTTCGCAGTTTAAGATTCTTTAGTCTTTATCCATTCCTTTCg
tgtttgatatttttcaaaagtcgcAATACGACATCAACTCGTAGTTTGAC
CTCAATCATTCAAGATTACCAGTCGGTCAATGTCTTCATcgacaaattta
aaaaagcGACATAAGTGGAATTGATTATCGAGTGAATGTAGGGTTGAAAA
TCCTCCTTTAAACTGGACATCGAACATGACACCTTTTCATTACCCACCTT
ACTCCTGTTACCGTCTTACAATAAACTGACGTCgtttataaaaagaaatc
tAGGCTTACaaatgtctttcaaatcgatTTCATCTTAGGGACCTgctaaa
aaagatttcaaatgtTACGATTGACGATTTAAAAATGGTTGGGAAGAAAT
ATTTCGTTCAACTCTTCGACCCTTCAGTATTCACTGCTACCTTGTGTTGC
CATCCAACCAAGATTGATGAAATCCTCAAATCATTCGGAGAGTAAGTTAT
TTATCTGTCTCGTGAAATGAACTCGCCTAGAAAAAAAACTGGTTCATGGG
GCCGGACCTGGAGAATGAATTGATAAGGGTAGAAAAAAGGCCTGAAAAAT
TGTCGTGGAAATAAGTcactgaaaatgtttttttttctacccCAAATATT
TCTTTCCTGAATTGGTTAATATTTGGAAGTAGTATTTCAACTCCTGTTAT
CAACATTGCACTTGTCTGGAAATCGAGGTTTTTTTCTCTGAAAGAGACAT
ATGAGAAGTACTGTGACAGGCATGGCGTCTTTTTCATTACCTAAGGTTTT
CGAGAATGGGCTTTAATGGTACTCATATTTGTGAttgatattttctcttt
ctctttcagACTTGGCATCAATTATGAGAAATTGAAGACTTTGGAGGAAG
CTTTTCTCAAATAAATCATTAGATGGGAATAGGTTTAGGGAGAGTATCAC
AATTATGTCATGAACTTGtagatgtttttaaaatttagtacagTATTTAT
TAAATTAATTTTGTGATGAATGAATGAGTCGCAATAAGATGcaagataaa
caaaaacaaatgacGAGCATTATTTTCGTTTCCTGTGTCATCAATCAAAG
TATGAGTGATTTGAAGTGCTATAAATTTCACCTTTTTacaacttttgttt
tctttcacttgaAATCAAATCTTAAATTGTAATTTGATGTGTGTGACTTT
TCggtcaaaaagtatacaaaatTACCGTCTGCAATGTGTTGAGtaaattt
tgggaaaagaaAGCATGATGTATAAGGTAATATATTTTGTTATTAAAGAG
TTCccttttaagtttttaaattaCACATAAAGATCCAATTGGTTGTAAAT
CActtaaaatcaaccaatcaatggTCTGTGCTGTAATGTGTAGTATTAGT
CGATTACTAGCATCGGTAAACAGAGTTTTTACAGCCTCTACTTGCGATAA
ATTAtcaatagaaaaatgttttagcGTGTAGCCTCGTTAATGACAAATCT
ATTATGCTCTTAGCATTTACGGTCTAAACACACGAGCAGTCGgcgttctt
tttttccaggaaagGGAATTTTGGAGTAAAATCCAGGAGCCAGCTATTGT
TCAAGCACTTCCAAAAATCTAGGAAGgagtatgaaatatctgttccgaaa
atccaggagcaaaaaattaaaaaaaagatttacttTTCCAGCAGACCACA
GATGTGATTCATAAAAATCACAGGACCAAATTAAACAGAGAGCAGATGCT
GTTTTTCCAGGAGCATCTCGGTGTTCAATTAAAGAACATAAGAACAGATG
AATTTTTCCAGTGGTCATGATTTAAACTCAGAACAGATGTAAATTTCAAG
GaagctaaatttttcaaaaataaataagtttATCCAGGAATCTGGCAAGA
GAAGAACAGAtacatttttccaaaacttttttttaactaTTTCTGATACT
TAGCCAAACTAGTGACAACCCTAAAAACAACTATTAATTTGTTCTCTTTT
AACGACAGTAGAATTTCCTAAAAACTTTTACCGTCATTTTCTTTGTATAC
ATAATACAACATTCTCTCACAGAAAGATGTTCACTTTCTTTCAGCTCTTG
TTCTTCCTTCACAATTTGTTCTCTGTGTGCTTAGCAATCAAATGGTATGG
CGTAAGTCGACCACCTGTTGGTCATTGCAATGCAGATTGGTATGAACCAT
TTGGTGATATCACAAGCGATGCCAACCACTCCATCCCTTTTACTAAACGA
AATGTCAAAGGACATGAAGAACTTGATGGGAAATCAATCATGAAAAATGA
AGGTATTCCACATTGCTGATCTCTTGTTTTCGCCTCTTTGCCTTTAGTTC
AAACCAACTTTCTTGATGGGATGACCAGCTTTCTCTTTCATGACTGGATA
ACATATTCGTTCAACTTCTACTCTACTTGAACACCCAAAGATTCTTTTCG
TATACCAAAGCACTGGACAACATTATGTAATATTTAATTGATCGAGCTTT
TTACGATAGTTGATAACCGGTTGATATTCATGAGTGTGAATCAGCGAATT
GGAAGCACTTCATGAGCTTCgtgtatctttttttttcagccacGATATTA
CAATACTTGGCTGGTCGCTCCGGAATACAGATTAATACAACTGAAAGCAT
TCATCTACCGCATATCGCAGAAATCGAAACAGCTCCTGAAATCGCTATTT
CACTGATGATGCATTCTTTCGTATATAAAAGGAAAGTAGAATCGAACACC
TTTTCGGTACAAACTCTATTGGCGGCTTATGAGGGCGTACAGGCGCTGTG
GCGTACTGAGAACAACCAAGCCATCAATCGAATGGCGGCGCATCTCAGTA
AAGAGAGGTTTGTGAAACATCAAGAACGTTTTGATGATATCTTGGTTCCC
TTGCAATCTACTTTTGTCAGCTGTTTAAAACATACTGAGCATGGAGAACC
TGAAATTCTGAACTGTATTGAAGAGATGGAATGGTTAAGCAGGCTTTACA
AGAACCAACTCATGTTATATTACGATAAATTATCTCAGCCTGGTTTCCAT
CTGAAACATGAAGATATACATGATGTAGAAACCAACTTGTTGACGTTTCG
CAATTATGTCAATCTTCGAATGAAAATCTATCTTGTATTGTTGAGCACAC
TGAAACAGATTGACGGCAAGACATCACGTATCAAACTTGGTTATTTCTCA
AATCAACTCATCCAGGAATTAGGCTTGTACCTCAAATATGTCGAAGCAGC
AAATGAAAACATTGAGAATCTTTATCAAAATGAGCCAGGGTTGAATCTTG
ATGACCAGCACTGCGTAAAGAATCCAACTTCGTTTGGACGAGGAGTGGTA
TgttatttcaatttctgcaaatctTCACATGAAAAATGTGCTTTCACTGT
TAATGTATTTCAGAAAGAAAATGTCGAAGGTGCAGTACAGTTTGAAGCTG
CAACTAAAGATTCTTTCGAAGCTGGAAGAATATTTGCAGGAATGAAAGCT
ACAGATTCTTATAATGATTATCATATAGACTTGCAAAAGGCTATTAAGAA
TCGCTGGGATCGAAAAATGTCACTTATTGTCAAAACCTGGTCACAAATTC
GTGATCGAATCTTAGTCTCCAATGGGAGGTTTATCAAGGAGGTTAGCAAA
CAGAATTTTTCCTTTAAGTTGAAATCCAGCCAAGCAAAGAATGTTAACAT
TTTGAAAACACAAATTGATGCAGCGAGATCAAAACGACATGCTGATCAGA
AAGATCATGGGTTTGTTAAAGAAAATTCAAACCATGATGAActgtaattt
atatttttagatatatTTTCCATGTTTCTAGATAGTTTTGAAATAGTGTT
TAAAAGCTCATACTCGGGTATTACTATAACTCGTTTTTATAAAAGTATTA
AAATTTACACTGCAGGTTTTATTAAGTGTTagttatttttcagttttgat
cGATCGAGAAATGGTGCTCAAATCAAATTGATGCCTTCTGAATTTGGCAA
TCAAGATTCTTCGAACGTCTTTTTGCAGTAGAATGTAAATCAAAGCATCA
CTAGTATAAGCCAAAGTGTAAAGTATATAAGTTGATAAAACCAATGGCCA
AGATTTTGGTGCATCGAAGTCAGGATGTAAATCTCTAACGTGGTAAACAA
AGTTGAGAAGGTCAGGAAACATcatgaataaaataaaactgaTCACCAAC
AATGAGATCATCAATAGCGGTGAAGATCGACTGAAAAGAAATCGGAATGT
GAAGTTCCTTCGTATGTCACTTTTACTTCGTGTAGCAGGTGGTTTTTGTT
tcggatttttttgttttttagaatGTATCGATGTCTCTTGTTTGTTGATG
TTGTGAGGACACGAATGATGGAGCgccattttcattttaatgtATTGCTT
CAAGATATAAGTGTATGTTACCAATGCAATTATTAGAAACGCAAATTCCA
TTGTCGAGAAGAAATACAGATAACAGAATGAAATATGATTAAATTTCGGA
CTGAATAATATCATCAACATGGTGAATGCCAGTGCGCATGCCCATATCAC
CCATAACGTTAAATTGACAGCTCGTTGTGTGATGTAATTAGGGTATTGGA
TGTTGAGTTTCATTTCGGCCAGTCGGTCTAGTGTGATCAAAATGTTCATA
CAGTAATATACCAACGAGAAACCAGTGTTCTTGATTAAGGTCAAAACATA
AATGACCTGGTTGTTATGTGCGTGGTCATCTAGTACCAGAATCATTGCAC
TGATGATCAAGCTCAGAAGAACCAGGCCCACTTCAGAGAAACTTAATTGT
TGAATCAGTTTCAAATGAGTAGCATTCCTTTGTTTTCGCAGAATCCGTAA
TGCATATAAACCAATCAAATGAACGGTTAAGGGTATAAATCGGACACCTA
TATTGATTTCTTCGGACACGTAGAAAACCCTTGTTTGATTGCTAGAcgcc
atcttcttcttttttcttttttcttttttcttttttttaccttttttcct
TCATCTGCCGTCCTTCTTTGACTNtttcttttttctttttttaccttttt
tcctTCATCTGCCGTCCTTCTTTGACTTCTCCTAGTATATTATTTGAGTG
TTAAAGCCGAAAAAATTATCTTCTATTTTAG

Coding sequence (CDS) from alignment at sc0000066:107060..115340+

>TCONS_00006218 ID=TCONS_00006218|Name=TCONS_00006218|organism=Clytia hemisphaerica|type=CDS|length=4284bp|location=Sequence derived from alignment at sc0000066:107060..115340+ (Clytia hemisphaerica)
ATGATGTATAAGCTCTTGTTCTTCCTTCACAATTTGTTCTCTGTGTGCTT
AGCAATCAAATGGTATGGCGTAAGTCGACCACCTGTTGGTCATTGCAATG
CAGATTGGTATGAACCATTTGGTGATATCACAAGCGATGCCAACCACTCC
ATCCCTTTTACTAAACGAAATGTCAAAGGACATGAAGAACTTGATGGGAA
ATCAATCATGAAAAATGAAGccacGATATTACAATACTTGGCTGGTCGCT
CCGGAATACAGATTAATACAACTGAAAGCATTCATCTACCGCATATCGCA
GAAATCGAAACAGCTCCTGAAATCGCTATTTCACTGATGATGCATTCTTT
CGTATATAAAAGGAAAGTAGAATCGAACACCTTTTCGGTACAAACTCTAT
TGGCGGCTTATGAGGGCGTACAGGCGCTGTGGCGTACTGAGAACAACCAA
GCCATCAATCGAATGGCGGCGCATCTCAGTAAAGAGAGGTTTGTGAAACA
TCAAGAACGTTTTGATGATATCTTGGTTCCCTTGCAATCTACTTTTGTCA
GCTGTTTAAAACATACTGAGCATGGAGAACCTGAAATTCTGAACTGTATT
GAAGAGATGGAATGGTTAAGCAGGCTTTACAAGAACCAACTCATGTTATA
TTACGATAAATTATCTCAGCCTGGTTTCCATCTGAAACATGAAGATATAC
ATGATGTAGAAACCAACTTGTTGACGTTTCGCAATTATGTCAATCTTCGA
ATGAAAATCTATCTTGTATTGTTGAGCACACTGAAACAGATTGACGGCAA
GACATCACGTATCAAACTTGGTTATTTCTCAAATCAACTCATCCAGGAAT
TAGGCTTGTACCTCAAATATGTCGAAGCAGCAAATGAAAACATTGAGAAT
CTTTATCAAAATGAGCCAGGGTTGAATCTTGATGACCAGCACTGCGTAAA
GAATCCAACTTCGTTTGGACGAGGAGTGGTATgttatttcaatttctgca
aatctTCACATGAAAAATGTGCTTTCACTGTTAATGTATTTCAGAAAGAA
AATGTCGAAGGTGCAGTACAGTTTGAAGCTGCAACTAAAGATTCTTTCGA
AGCTGGAAGAATATTTGCAGGAATGAAAGCTACAGATTCTTATAATGATT
ATCATATAGACTTGCAAAAGGCTATTAAGAATCGCTGGGATCGAAAAATG
TCACTTATTGTCAAAACCTGGTCACAAATTCGTGATCGAATCTTAGTCTC
CAATGGGAGGTTTATCAAGGAGGTTAGCAAACAGAATTTTTCCTTTAAGT
TGAAATCCAGCCAAGCAAAGAATGTTAACATTTTGAAAACACAAATTGAT
GCAGCGAGATCAAAACGACATGCTGATCAGAAAGATCATGGGTTTGTTAA
AGAAAATTCAAACCATGATGAActgtaaATGATGTATAAGCTCTTGTTCT
TCCTTCACAATTTGTTCTCTGTGTGCTTAGCAATCAAATGGTATGGCGTA
AGTCGACCACCTGTTGGTCATTGCAATGCAGATTGGTATGAACCATTTGG
TGATATCACAAGCGATGCCAACCACTCCATCCCTTTTACTAAACGAAATG
TCAAAGGACATGAAGAACTTGATGGGAAATCAATCATGAAAAATGAAGcc
acGATATTACAATACTTGGCTGGTCGCTCCGGAATACAGATTAATACAAC
TGAAAGCATTCATCTACCGCATATCGCAGAAATCGAAACAGCTCCTGAAA
TCGCTATTTCACTGATGATGCATTCTTTCGTATATAAAAGGAAAGTAGAA
TCGAACACCTTTTCGGTACAAACTCTATTGGCGGCTTATGAGGGCGTACA
GGCGCTGTGGCGTACTGAGAACAACCAAGCCATCAATCGAATGGCGGCGC
ATCTCAGTAAAGAGAGGTTTGTGAAACATCAAGAACGTTTTGATGATATC
TTGGTTCCCTTGCAATCTACTTTTGTCAGCTGTTTAAAACATACTGAGCA
TGGAGAACCTGAAATTCTGAACTGTATTGAAGAGATGGAATGGTTAAGCA
GGCTTTACAAGAACCAACTCATGTTATATTACGATAAATTATCTCAGCCT
GGTTTCCATCTGAAACATGAAGATATACATGATGTAGAAACCAACTTGTT
GACGTTTCGCAATTATGTCAATCTTCGAATGAAAATCTATCTTGTATTGT
TGAGCACACTGAAACAGATTGACGGCAAGACATCACGTATCAAACTTGGT
TATTTCTCAAATCAACTCATCCAGGAATTAGGCTTGTACCTCAAATATGT
CGAAGCAGCAAATGAAAACATTGAGAATCTTTATCAAAATGAGCCAGGGT
TGAATCTTGATGACCAGCACTGCGTAAAGAATCCAACTTCGTTTGGACGA
GGAGTGGTATgttatttcaatttctgcaaatctTCACATGAAAAATGTGC
TTTCACTGTTAATGTATTTCAGAAAGAAAATGTCGAAGGTGCAGTACAGT
TTGAAGCTGCAACTAAAGATTCTTTCGAAGCTGGAAGAATATTTGCAGGA
ATGAAAGCTACAGATTCTTATAATGATTATCATATAGACTTGCAAAAGGC
TATTAAGAATCGCTGGGATCGAAAAATGTCACTTATTGTCAAAACCTGGT
CACAAATTCGTGATCGAATCTTAGTCTCCAATGGGAGGTTTATCAAGGAG
GTTAGCAAACAGAATTTTTCCTTTAAGTTGAAATCCAGCCAAGCAAAGAA
TGTTAACATTTTGAAAACACAAATTGATGCAGCGAGATCAAAACGACATG
CTGATCAGAAAGATCATGGGTTTGTTAAAGAAAATTCAAACCATGATGAA
ctgtaaATGATGTATAAGCTCTTGTTCTTCCTTCACAATTTGTTCTCTGT
GTGCTTAGCAATCAAATGGTATGGCGTAAGTCGACCACCTGTTGGTCATT
GCAATGCAGATTGGTATGAACCATTTGGTGATATCACAAGCGATGCCAAC
CACTCCATCCCTTTTACTAAACGAAATGTCAAAGGACATGAAGAACTTGA
TGGGAAATCAATCATGAAAAATGAAGccacGATATTACAATACTTGGCTG
GTCGCTCCGGAATACAGATTAATACAACTGAAAGCATTCATCTACCGCAT
ATCGCAGAAATCGAAACAGCTCCTGAAATCGCTATTTCACTGATGATGCA
TTCTTTCGTATATAAAAGGAAAGTAGAATCGAACACCTTTTCGGTACAAA
CTCTATTGGCGGCTTATGAGGGCGTACAGGCGCTGTGGCGTACTGAGAAC
AACCAAGCCATCAATCGAATGGCGGCGCATCTCAGTAAAGAGAGGTTTGT
GAAACATCAAGAACGTTTTGATGATATCTTGGTTCCCTTGCAATCTACTT
TTGTCAGCTGTTTAAAACATACTGAGCATGGAGAACCTGAAATTCTGAAC
TGTATTGAAGAGATGGAATGGTTAAGCAGGCTTTACAAGAACCAACTCAT
GTTATATTACGATAAATTATCTCAGCCTGGTTTCCATCTGAAACATGAAG
ATATACATGATGTAGAAACCAACTTGTTGACGTTTCGCAATTATGTCAAT
CTTCGAATGAAAATCTATCTTGTATTGTTGAGCACACTGAAACAGATTGA
CGGCAAGACATCACGTATCAAACTTGGTTATTTCTCAAATCAACTCATCC
AGGAATTAGGCTTGTACCTCAAATATGTCGAAGCAGCAAATGAAAACATT
GAGAATCTTTATCAAAATGAGCCAGGGTTGAATCTTGATGACCAGCACTG
CGTAAAGAATCCAACTTCGTTTGGACGAGGAGTGGTATgttatttcaatt
tctgcaaatctTCACATGAAAAATGTGCTTTCACTGTTAATGTATTTCAG
AAAGAAAATGTCGAAGGTGCAGTACAGTTTGAAGCTGCAACTAAAGATTC
TTTCGAAGCTGGAAGAATATTTGCAGGAATGAAAGCTACAGATTCTTATA
ATGATTATCATATAGACTTGCAAAAGGCTATTAAGAATCGCTGGGATCGA
AAAATGTCACTTATTGTCAAAACCTGGTCACAAATTCGTGATCGAATCTT
AGTCTCCAATGGGAGGTTTATCAAGGAGGTTAGCAAACAGAATTTTTCCT
TTAAGTTGAAATCCAGCCAAGCAAAGAATGTTAACATTTTGAAAACACAA
ATTGATGCAGCGAGATCAAAACGACATGCTGATCAGAAAGATCATGGGTT
TGTTAAAGAAAATTCAAACCATGATGAActgtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003564XLOC_003564Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006218-proteinTCONS_00006218-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006218-exon-sc0000066-1491911889:107060..107217TCONS_00006218-exon-sc0000066-1491911889:107060..107217Clytia hemisphaericaexon
TCONS_00006218-exon-sc0000066-1510915933:107060..107217TCONS_00006218-exon-sc0000066-1510915933:107060..107217Clytia hemisphaericaexon
TCONS_00006218-exon-sc0000066-1575043694:107060..107217TCONS_00006218-exon-sc0000066-1575043694:107060..107217Clytia hemisphaericaexon
TCONS_00006218-exon-sc0000066-1491911889:108345..108522TCONS_00006218-exon-sc0000066-1491911889:108345..108522Clytia hemisphaericaexon
TCONS_00006218-exon-sc0000066-1510915933:108345..108522TCONS_00006218-exon-sc0000066-1510915933:108345..108522Clytia hemisphaericaexon
TCONS_00006218-exon-sc0000066-1575043694:108345..108522TCONS_00006218-exon-sc0000066-1575043694:108345..108522Clytia hemisphaericaexon
TCONS_00006218-exon-sc0000066-1491911889:108837..108980TCONS_00006218-exon-sc0000066-1491911889:108837..108980Clytia hemisphaericaexon
TCONS_00006218-exon-sc0000066-1510915933:108837..108980TCONS_00006218-exon-sc0000066-1510915933:108837..108980Clytia hemisphaericaexon
TCONS_00006218-exon-sc0000066-1575043694:108837..108980TCONS_00006218-exon-sc0000066-1575043694:108837..108980Clytia hemisphaericaexon
TCONS_00006218-exon-sc0000066-1491911889:109661..109777TCONS_00006218-exon-sc0000066-1491911889:109661..109777Clytia hemisphaericaexon
TCONS_00006218-exon-sc0000066-1510915933:109661..109777TCONS_00006218-exon-sc0000066-1510915933:109661..109777Clytia hemisphaericaexon
TCONS_00006218-exon-sc0000066-1575043694:109661..109777TCONS_00006218-exon-sc0000066-1575043694:109661..109777Clytia hemisphaericaexon
TCONS_00006218-exon-sc0000066-1491911889:110143..110186TCONS_00006218-exon-sc0000066-1491911889:110143..110186Clytia hemisphaericaexon
TCONS_00006218-exon-sc0000066-1510915933:110143..110186TCONS_00006218-exon-sc0000066-1510915933:110143..110186Clytia hemisphaericaexon
TCONS_00006218-exon-sc0000066-1575043694:110143..110186TCONS_00006218-exon-sc0000066-1575043694:110143..110186Clytia hemisphaericaexon
TCONS_00006218-exon-sc0000066-1491911889:110548..110700TCONS_00006218-exon-sc0000066-1491911889:110548..110700Clytia hemisphaericaexon
TCONS_00006218-exon-sc0000066-1510915933:110548..110700TCONS_00006218-exon-sc0000066-1510915933:110548..110700Clytia hemisphaericaexon
TCONS_00006218-exon-sc0000066-1575043694:110548..110700TCONS_00006218-exon-sc0000066-1575043694:110548..110700Clytia hemisphaericaexon
TCONS_00006218-exon-sc0000066-1491911889:111069..111485TCONS_00006218-exon-sc0000066-1491911889:111069..111485Clytia hemisphaericaexon
TCONS_00006218-exon-sc0000066-1510915933:111069..111485TCONS_00006218-exon-sc0000066-1510915933:111069..111485Clytia hemisphaericaexon
TCONS_00006218-exon-sc0000066-1575043694:111069..111485TCONS_00006218-exon-sc0000066-1575043694:111069..111485Clytia hemisphaericaexon
TCONS_00006218-exon-sc0000066-1491911889:112304..112511TCONS_00006218-exon-sc0000066-1491911889:112304..112511Clytia hemisphaericaexon
TCONS_00006218-exon-sc0000066-1510915933:112304..112511TCONS_00006218-exon-sc0000066-1510915933:112304..112511Clytia hemisphaericaexon
TCONS_00006218-exon-sc0000066-1575043694:112304..112511TCONS_00006218-exon-sc0000066-1575043694:112304..112511Clytia hemisphaericaexon
TCONS_00006218-exon-sc0000066-1491911889:112799..115340TCONS_00006218-exon-sc0000066-1491911889:112799..115340Clytia hemisphaericaexon
TCONS_00006218-exon-sc0000066-1510915933:112799..115340TCONS_00006218-exon-sc0000066-1510915933:112799..115340Clytia hemisphaericaexon
TCONS_00006218-exon-sc0000066-1575043694:112799..115340TCONS_00006218-exon-sc0000066-1575043694:112799..115340Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000066supercontigsc0000066:107060..115340 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
17.701	14.5965	3.4474	2.68144	20.1219	15.8704	19.3779	20.9866	12.7888	17.3709	14.8871	10.1389	13.0993	11.8078	10.1371	13.9499	12.8835	13.7145	6.10132	6.23734	8.65775	8.9498	15.1133	14.1246	13.2384	16.3634	7.55896	8.67597	18.0515	20.7441
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006218 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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