TCONS_00006217 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006217
Unique NameTCONS_00006217
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length346

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006217 ID=TCONS_00006217|Name=TCONS_00006217|organism=Clytia hemisphaerica|type=transcript|length=346bp
CAAATAGAGATGTTTCATCAATGAGTCATTATCAACGCAAACTTCACTAA
GTGTACCACCACCATTCTTGTACAAGTAACCATTGCGTACATACAAAATG
TTTGGATGACTGGGGACAACGTGCGTGTTGCTCAAAAGAAGAAACTGGAA
CAACCTTTTTTCATTGATTAACAAtaatttagaccatgttcaaaCCAGTT
CAGACGTTACAGTTTCATGTCATATCGTTCCGGTATAGTTAGTTTCCGTT
ACGGATtgagagtgttcatattggtttcgaaacgtttcggagcaagaaaa
cggagcagttccgttccgatgaaaacaGTTGAACAAAACCGttttg
Run BLAST on NCBI

transcript from alignment at sc0000066:89232..89808+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006217 ID=TCONS_00006217|Name=TCONS_00006217|organism=Clytia hemisphaerica|type=transcript|length=577bp|location=Sequence derived from alignment at sc0000066:89232..89808+ (Clytia hemisphaerica)
CAAATAGAGATGTTTCATCAATGAGTCATTATCAACGCAAACTTCACTAA
GGTAGGCTTTCAAAGTGCCCAGTAGAAAACTATTCTGCTCTGGGGTATTA
AAGTTATCTAGGTAGGTTTTCCCACTTTTACCTACCTGAAAATCGTGTgt
ctttaaatttttaagtAACGTTCAATTTGTCTGAGCTGAGTGAGTACTTT
GTCAACTGGACGCTATATATTGCCTGGGTTTTCGTTTTGTAACGACACAC
TATATGCCGAATTTTTTGTTCAATCTATTTAGTGTACCACCACCATTCTT
GTACAAGTAACCATTGCGTACATACAAAATGTTTGGATGACTGGGGACAA
CGTGCGTGTTGCTCAAAAGAAGAAACTGGAACAACCTTTTTTCATTGATT
AACAAtaatttagaccatgttcaaaCCAGTTCAGACGTTACAGTTTCATG
TCATATCGTTCCGGTATAGTTAGTTTCCGTTACGGATtgagagtgttcat
attggtttcgaaacgtttcggagcaagaaaacggagcagttccgttccga
tgaaaacaGTTGAACAAAACCGttttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003563XLOC_003563Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006217-exon-sc0000066-1491911889:89232..89282TCONS_00006217-exon-sc0000066-1491911889:89232..89282Clytia hemisphaericaexon
TCONS_00006217-exon-sc0000066-1510915933:89232..89282TCONS_00006217-exon-sc0000066-1510915933:89232..89282Clytia hemisphaericaexon
TCONS_00006217-exon-sc0000066-1575043694:89232..89282TCONS_00006217-exon-sc0000066-1575043694:89232..89282Clytia hemisphaericaexon
TCONS_00006217-exon-sc0000066-1491911889:89514..89808TCONS_00006217-exon-sc0000066-1491911889:89514..89808Clytia hemisphaericaexon
TCONS_00006217-exon-sc0000066-1510915933:89514..89808TCONS_00006217-exon-sc0000066-1510915933:89514..89808Clytia hemisphaericaexon
TCONS_00006217-exon-sc0000066-1575043694:89514..89808TCONS_00006217-exon-sc0000066-1575043694:89514..89808Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000066supercontigsc0000066:89232..89808 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.71471	4.0614	3.10295	1.48086	1.95836	0.953548	1.48069	1.79922	2.59757	3.08583	3.3025	1.66526	3.02321	2.40075	3.67539	3.23811	5.00136	4.9366	1.87746	5.75834	2.53611	3.9656	7.44153	7.46064	0	0	12.5005	3.59314	8.07618	6.86748
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006217 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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