TCONS_00006208 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006208
Unique NameTCONS_00006208
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length481

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006208 ID=TCONS_00006208|Name=TCONS_00006208|organism=Clytia hemisphaerica|type=transcript|length=481bp
GGCGTAAGGGGTAAAACTCTTGAATGGATCACCAACTACCTCTCCGATCG
CACTCAAACTGTTGTCATTAACGGCAAgtcatctgaaaaagctaatgttA
TCTCTGGAGTTCCTCAAGGCACAGTCCTCGGCCCTCTTCTGTTTTTAGTT
TACATAAACAATCTTCCTGAATTGGTTAAATGTAAAATAAGATTGTTTGC
TGATGATGCACTCATTTACAGAGTCATTGACTCAATTAATGATGCCATAA
GCCTTCAGGAAAACTTAAACCAACTCATGAATTGGGAACATGAATGGTCA
ATGGAGCTCAACCCGGACAAATGTAAAGTTTTACGAATCACCAACAAGCG
TAATACTATCATTCAACCATATTCGATGCACAACCAAGTACTTGAAGTTG
TTGACTCAGCGAAATATCTAGGTGTGTATATCCACAAAAAGCTCTCCTGG
AATGTCCATAACGACTATACTGTTAAGAAAG
Run BLAST on NCBI

protein sequence of TCONS_00006208-protein

>TCONS_00006208-protein ID=TCONS_00006208-protein|Name=TCONS_00006208-protein|organism=Clytia hemisphaerica|type=polypeptide|length=160bp
GVRGKTLEWITNYLSDRTQTVVINGKSSEKANVISGVPQGTVLGPLLFLV
YINNLPELVKCKIRLFADDALIYRVIDSINDAISLQENLNQLMNWEHEWS
MELNPDKCKVLRITNKRNTIIQPYSMHNQVLEVVDSAKYLGVYIHKKLSW
NVHNDYTVKK
Run BLAST on NCBI

transcript from alignment at sc0000063:702021..702501

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006208 ID=TCONS_00006208|Name=TCONS_00006208|organism=Clytia hemisphaerica|type=transcript|length=481bp|location=Sequence derived from alignment at sc0000063:702021..702501 (Clytia hemisphaerica)
CTTTCTTAACAGTATAGTCGTTATGGACATTCCAGGAGAGCTTTTTGTGG
ATATACACACCTAGATATTTCGCTGAGTCAACAACTTCAAGTACTTGGTT
GTGCATCGAATATGGTTGAATGATAGTATTACGCTTGTTGGTGATTCGTA
AAACTTTACATTTGTCCGGGTTGAGCTCCATTGACCATTCATGTTCCCAA
TTCATGAGTTGGTTTAAGTTTTCCTGAAGGCTTATGGCATCATTAATTGA
GTCAATGACTCTGTAAATGAGTGCATCATCAGCAAACAATCTTATTTTAC
ATTTAACCAATTCAGGAAGATTGTTTATGTAAACTAAAAACAGAAGAGGG
CCGAGGACTGTGCCTTGAGGAACTCCAGAGATaacattagctttttcaga
tgacTTGCCGTTAATGACAACAGTTTGAGTGCGATCGGAGAGGTAGTTGG
TGATCCATTCAAGAGTTTTACCCCTTACGCC

Coding sequence (CDS) from alignment at sc0000063:702021..702501

>TCONS_00006208 ID=TCONS_00006208|Name=TCONS_00006208|organism=Clytia hemisphaerica|type=CDS|length=480bp|location=Sequence derived from alignment at sc0000063:702021..702501 (Clytia hemisphaerica)
TTTCTTAACAGTATAGTCGTTATGGACATTCCAGGAGAGCTTTTTGTGGA
TATACACACCTAGATATTTCGCTGAGTCAACAACTTCAAGTACTTGGTTG
TGCATCGAATATGGTTGAATGATAGTATTACGCTTGTTGGTGATTCGTAA
AACTTTACATTTGTCCGGGTTGAGCTCCATTGACCATTCATGTTCCCAAT
TCATGAGTTGGTTTAAGTTTTCCTGAAGGCTTATGGCATCATTAATTGAG
TCAATGACTCTGTAAATGAGTGCATCATCAGCAAACAATCTTATTTTACA
TTTAACCAATTCAGGAAGATTGTTTATGTAAACTAAAAACAGAAGAGGGC
CGAGGACTGTGCCTTGAGGAACTCCAGAGATaacattagctttttcagat
gacTTGCCGTTAATGACAACAGTTTGAGTGCGATCGGAGAGGTAGTTGGT
GATCCATTCAAGAGTTTTACCCCTTACGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003554XLOC_003554Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006208-exon-sc0000063-1491911889:702021..702501TCONS_00006208-exon-sc0000063-1491911889:702021..702501Clytia hemisphaericaexon
TCONS_00006208-exon-sc0000063-1510915933:702021..702501TCONS_00006208-exon-sc0000063-1510915933:702021..702501Clytia hemisphaericaexon
TCONS_00006208-exon-sc0000063-1575043694:702021..702501TCONS_00006208-exon-sc0000063-1575043694:702021..702501Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006208-proteinTCONS_00006208-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000063supercontigsc0000063:702021..702501 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.84084	1.1793	1.68849	2.95823	0.82699	0.772154	1.14461	0.222352	0.254388	0.739697	0.188892	0	0.42899	0.343024	0.369175	0.379499	0.121957	0.814018	0	0.867549	0.893646	1.2765	0.830481	0.640573	0.148057	0	0.74049	0.712939	0.85072	1.13205
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006208 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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