TCONS_00006204 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006204
Unique NameTCONS_00006204
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length533

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006204 ID=TCONS_00006204|Name=TCONS_00006204|organism=Clytia hemisphaerica|type=transcript|length=533bp
GGAAAAACAAAGTCGTGTGTCGTATAACATCGAATAGAAGGACCATAATT
CCAAGGACCATACAAGAAGACTTTGGaaagaagattaaaacatttCGATA
AGTAATAGAATATCTTTGGTGCGATGAAACATACCATCAGTCTTATATTT
TTGTCGATTATCATTTTAATGAACAAAGTCAACTGcgatgatgatgacga
tgattGTCTTTTTTCAACCGGATGCGATCCCTACCAAGTTCCAGATCCTT
GTCAATCGTGTAATTCACATTGTATTAACTTATTATTCTTTACATCTTGT
ATTCCGTTGGGTTCTTCTAGCTTTACGGGAAGAGCGACAAAGTAAATTTA
CAGAAGTTTATTCGACAACAAGATGACAACTAACATTTCTAAGGCTGGGA
TGAAAATCAACAATGAATAAagtttatataaaatttttgataaggatcct
ttttgattttgtaaagtttttgttAAGATATTTTAACCACTATGTCATAT
TCAATAAGTCAAAGTAAACAAATTATATCCAAC
Run BLAST on NCBI

transcript from alignment at sc0000063:638377..638909

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006204 ID=TCONS_00006204|Name=TCONS_00006204|organism=Clytia hemisphaerica|type=transcript|length=533bp|location=Sequence derived from alignment at sc0000063:638377..638909 (Clytia hemisphaerica)
GTTGGATATAATTTGTTTACTTTGACTTATTGAATATGACATAGTGGTTA
AAATATCTTaacaaaaactttacaaaatcaaaaaggatccttatcaaaaa
ttttatataaactTTATTCATTGTTGATTTTCATCCCAGCCTTAGAAATG
TTAGTTGTCATCTTGTTGTCGAATAAACTTCTGTAAATTTACTTTGTCGC
TCTTCCCGTAAAGCTAGAAGAACCCAACGGAATACAAGATGTAAAGAATA
ATAAGTTAATACAATGTGAATTACACGATTGACAAGGATCTGGAACTTGG
TAGGGATCGCATCCGGTTGAAAAAAGACaatcatcgtcatcatcatcgCA
GTTGACTTTGTTCATTAAAATGATAATCGACAAAAATATAAGACTGATGG
TATGTTTCATCGCACCAAAGATATTCTATTACTTATCGaaatgttttaat
cttctttCCAAAGTCTTCTTGTATGGTCCTTGGAATTATGGTCCTTCTAT
TCGATGTTATACGACACACGACTTTGTTTTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003550XLOC_003550Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006204-exon-sc0000063-1491911889:638377..638909TCONS_00006204-exon-sc0000063-1491911889:638377..638909Clytia hemisphaericaexon
TCONS_00006204-exon-sc0000063-1510915933:638377..638909TCONS_00006204-exon-sc0000063-1510915933:638377..638909Clytia hemisphaericaexon
TCONS_00006204-exon-sc0000063-1575043694:638377..638909TCONS_00006204-exon-sc0000063-1575043694:638377..638909Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000063supercontigsc0000063:638377..638909 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.109499	0.106779	0	0.242591	0.147666	0.46675	3.9418	10.4118	27.1282	24.0019	8.65311	14.2205	0.218473	0.0756289	3.23322	0.0667257	0	0.084253	0	0.243609	0.10587	0	0.376649	0.114143	0	0	0.600581	1.60239	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006204 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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