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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006202 ID=TCONS_00006202|Name=TCONS_00006202|organism=Clytia hemisphaerica|type=transcript|length=1177bp
AGCTCGTGTTCGTGTAGCTCTCGCAGTCCACCGTGCTTTGGTTTCACCTC
ACATATCGCAATGATGTGGGGATGATGTCTCTACATCAAGCACAAGTTGT
CGCTTCTTCTCGGGTGTTAGCGTGTCGGCGTTGCAATAAAAGATCCTGAT
TTCGTTGATCTTTATTTCAACATCATCTACTTGATTTACGttatggtttt
cttgaattattGTTCTCCGATTGTTTTCGTTTGAGTAAAGATTCTTGGCG
AATATTACATTCTTCGTGTCTGTCTTCTTTGTTTGGGATCTGATTTTGAC
CTTGATGATGTCGAATCCGTTTTTTGAGTCCCCTCGAACTCTCCATTTAT
AGATATCAGAGTTATCATTCTCATTTCTAGTTTTAGCTTTGAACGATAGT
TCCCTTACGTTCTTTCTTTCATCTGGTGTTAGATCTTCAGTTATACTCGT
TGTCTTGTATTTTTGGATGCCCTTGAGAGAAGGAAGGTTTCCGAGAAGTG
AAAATTTTTCCTTTACGCTAGATAGACAGATTAATAAAGGGCGCTTCTTT
TCCTGAGATGGTTTTCCAAGGCGACTGACACGTTTGATAGTAGTGCGTGT
GTGAGTGTCTTTAACAAGACCTTCGGCCCATAAACTGTCATCTTCTTGTT
CTTGTTCTGCTAAGCCATGGATGACGACGTTGTGAGATCTTTTgattttg
tcattttcttcTGCTTCTTCTACACGCCATGCATCTCTAATAGCTTCTCT
GATAGTTGTTTGCTTGGCAGATACCTCAGAGGTCTTTGTAGCGTCAGCGT
AAGACTTTTCCGACAATGTCTTCATTTCTGTTTTGATAAGTTCTTGCATG
CTGTGCTTGAATTTCTCCATGTTTATTTCAATCTTTTGTTCAACGTATTC
CAAAGTGTGGAGTGCTGGATTGTTGTCCAGTTTCTTTTTGAGGTCAGCGA
GTTCTTTTTCTCTGGCATCGGCCGCAATTTTGTCTGCTTTGAACTTCTTT
AGAAGCTCTGCTTCTTTCTCAGCTTTGACCTTGATAATGTTTTCACAATT
TGCCACTTCCCTCTGGAGAGATTTCACCTTTTGATTTGGGGAAGTATATG
CACCAATATTCTTGGTCATAGTCACGCAGTTCACGCAAATGAACTTTATT
CCTTTCGTCTTTCCAACAATCAGCTGG Run BLAST on NCBI protein sequence of TCONS_00006202-protein >TCONS_00006202-protein ID=TCONS_00006202-protein|Name=TCONS_00006202-protein|organism=Clytia hemisphaerica|type=polypeptide|length=375bp
QLIVGKTKGIKFICVNCVTMTKNIGAYTSPNQKVKSLQREVANCENIIKV
KAEKEAELLKKFKADKIAADAREKELADLKKKLDNNPALHTLEYVEQKIE
INMEKFKHSMQELIKTEMKTLSEKSYADATKTSEVSAKQTTIREAIRDAW
RVEEAEENDKIKRSHNVVIHGLAEQEQEDDSLWAEGLVKDTHTRTTIKRV
SRLGKPSQEKKRPLLICLSSVKEKFSLLGNLPSLKGIQKYKTTSITEDLT
PDERKNVRELSFKAKTRNENDNSDIYKWRVRGDSKNGFDIIKVKIRSQTK
KTDTKNVIFAKNLYSNENNRRTIIQENHNVNQVDDVEIKINEIRIFYCNA
DTLTPEKKRQLVLDVETSSPHHCDM Run BLAST on NCBI transcript from alignment at sc0000063:583603..584779 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006202 ID=TCONS_00006202|Name=TCONS_00006202|organism=Clytia hemisphaerica|type=transcript|length=1177bp|location=Sequence derived from alignment at sc0000063:583603..584779 (Clytia hemisphaerica)
CCAGCTGATTGTTGGAAAGACGAAAGGAATAAAGTTCATTTGCGTGAACT
GCGTGACTATGACCAAGAATATTGGTGCATATACTTCCCCAAATCAAAAG
GTGAAATCTCTCCAGAGGGAAGTGGCAAATTGTGAAAACATTATCAAGGT
CAAAGCTGAGAAAGAAGCAGAGCTTCTAAAGAAGTTCAAAGCAGACAAAA
TTGCGGCCGATGCCAGAGAAAAAGAACTCGCTGACCTCAAAAAGAAACTG
GACAACAATCCAGCACTCCACACTTTGGAATACGTTGAACAAAAGATTGA
AATAAACATGGAGAAATTCAAGCACAGCATGCAAGAACTTATCAAAACAG
AAATGAAGACATTGTCGGAAAAGTCTTACGCTGACGCTACAAAGACCTCT
GAGGTATCTGCCAAGCAAACAACTATCAGAGAAGCTATTAGAGATGCATG
GCGTGTAGAAGAAGCAgaagaaaatgacaaaatcAAAAGATCTCACAACG
TCGTCATCCATGGCTTAGCAGAACAAGAACAAGAAGATGACAGTTTATGG
GCCGAAGGTCTTGTTAAAGACACTCACACACGCACTACTATCAAACGTGT
CAGTCGCCTTGGAAAACCATCTCAGGAAAAGAAGCGCCCTTTATTAATCT
GTCTATCTAGCGTAAAGGAAAAATTTTCACTTCTCGGAAACCTTCCTTCT
CTCAAGGGCATCCAAAAATACAAGACAACGAGTATAACTGAAGATCTAAC
ACCAGATGAAAGAAAGAACGTAAGGGAACTATCGTTCAAAGCTAAAACTA
GAAATGAGAATGATAACTCTGATATCTATAAATGGAGAGTTCGAGGGGAC
TCAAAAAACGGATTCGACATCATCAAGGTCAAAATCAGATCCCAAACAAA
GAAGACAGACACGAAGAATGTAATATTCGCCAAGAATCTTTACTCAAACG
AAAACAATCGGAGAACaataattcaagaaaaccataaCGTAAATCAAGTA
GATGATGTTGAAATAAAGATCAACGAAATCAGGATCTTTTATTGCAACGC
CGACACGCTAACACCCGAGAAGAAGCGACAACTTGTGCTTGATGTAGAGA
CATCATCCCCACATCATTGCGATATGTGAGGTGAAACCAAAGCACGGTGG
ACTGCGAGAGCTACACGAACACGAGCT Coding sequence (CDS) from alignment at sc0000063:583603..584779 >TCONS_00006202 ID=TCONS_00006202|Name=TCONS_00006202|organism=Clytia hemisphaerica|type=CDS|length=1128bp|location=Sequence derived from alignment at sc0000063:583603..584779 (Clytia hemisphaerica)
CAGCTGATTGTTGGAAAGACGAAAGGAATAAAGTTCATTTGCGTGAACTG
CGTGACTATGACCAAGAATATTGGTGCATATACTTCCCCAAATCAAAAGG
TGAAATCTCTCCAGAGGGAAGTGGCAAATTGTGAAAACATTATCAAGGTC
AAAGCTGAGAAAGAAGCAGAGCTTCTAAAGAAGTTCAAAGCAGACAAAAT
TGCGGCCGATGCCAGAGAAAAAGAACTCGCTGACCTCAAAAAGAAACTGG
ACAACAATCCAGCACTCCACACTTTGGAATACGTTGAACAAAAGATTGAA
ATAAACATGGAGAAATTCAAGCACAGCATGCAAGAACTTATCAAAACAGA
AATGAAGACATTGTCGGAAAAGTCTTACGCTGACGCTACAAAGACCTCTG
AGGTATCTGCCAAGCAAACAACTATCAGAGAAGCTATTAGAGATGCATGG
CGTGTAGAAGAAGCAgaagaaaatgacaaaatcAAAAGATCTCACAACGT
CGTCATCCATGGCTTAGCAGAACAAGAACAAGAAGATGACAGTTTATGGG
CCGAAGGTCTTGTTAAAGACACTCACACACGCACTACTATCAAACGTGTC
AGTCGCCTTGGAAAACCATCTCAGGAAAAGAAGCGCCCTTTATTAATCTG
TCTATCTAGCGTAAAGGAAAAATTTTCACTTCTCGGAAACCTTCCTTCTC
TCAAGGGCATCCAAAAATACAAGACAACGAGTATAACTGAAGATCTAACA
CCAGATGAAAGAAAGAACGTAAGGGAACTATCGTTCAAAGCTAAAACTAG
AAATGAGAATGATAACTCTGATATCTATAAATGGAGAGTTCGAGGGGACT
CAAAAAACGGATTCGACATCATCAAGGTCAAAATCAGATCCCAAACAAAG
AAGACAGACACGAAGAATGTAATATTCGCCAAGAATCTTTACTCAAACGA
AAACAATCGGAGAACaataattcaagaaaaccataaCGTAAATCAAGTAG
ATGATGTTGAAATAAAGATCAACGAAATCAGGATCTTTTATTGCAACGCC
GACACGCTAACACCCGAGAAGAAGCGACAACTTGTGCTTGATGTAGAGAC
ATCATCCCCACATCATTGCGATATGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006202-exon-sc0000063-1491911889:583603..584779 | TCONS_00006202-exon-sc0000063-1491911889:583603..584779 | Clytia hemisphaerica | exon |
| TCONS_00006202-exon-sc0000063-1510915933:583603..584779 | TCONS_00006202-exon-sc0000063-1510915933:583603..584779 | Clytia hemisphaerica | exon |
| TCONS_00006202-exon-sc0000063-1575043694:583603..584779 | TCONS_00006202-exon-sc0000063-1575043694:583603..584779 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000063 | supercontig | sc0000063:583603..584779 . |
Blast
The following BLAST results are available for this feature:
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