|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006196 ID=TCONS_00006196|Name=TCONS_00006196|organism=Clytia hemisphaerica|type=transcript|length=1495bp
CTGGCTTGAAAGATTCGGTAAACTGGAAATGTTTTTGTCAGACAAAGTTT
GTATCATAATAAAATATTATGTGCGTAAAAATAAAGTGTTTAACAATAAC
TAACTGAATTCCTTTTTTGGATAATAGTAAGTCTTAAAAATTTCTGATAA
ATACGATAGAGAGTTGTTTTGTGCATATTGTAATTCAAACATTTTGTAGA
AGAGGAGAATGTTCGTTGAATTCATTTCTATCGTCTCTGACAAAAGAATC
GTCAATATAAGCTGAAGGATTTTGCTTGATTTTGGTCAACAGTTTTAACA
ATTTGTTCACATCTCTATCTGTCAGTTCTTCAAAGAAATTGATTTCATTC
AACCAGAAATGCGgacattgttttgatttgacaGCTTCACTCACGTGTTT
AAACAGCCAATAGAAACAATCCTCGATGTCATTTTCCCGCCAAAAACTCG
GTTCTGTTTTTTCTAACACATGCATGAAGATGCTTTTAAAATAATACGTA
CTTAGCTTGTCGCTGCATGGGATGAGAAAAtctttgacaataattttgaG
ACAAACGAAACATATTCTAGCGGTTGGTTGGATTTCGTTTAGTAATGTGA
CTTCTGCTTTTGAGAATGAAAATCTCCAAGTTGTTTCCTTTTTATCTTTT
GGATGTGATTTCGGAACCAAATGAAACCCTTCTTGTACAATTTTCTCAAC
AACATCGGAACAAGGCCATTTTCTTGTTCTTGTTAGCCAATCGGAATTTG
TCGGCCATTTTTTAGCTTTGATGGAAAAAGTTATATCTACCAGGAAGCTT
GATGAACTACCTTCGTGTCTTTTTATTCTAATTGCTGGTCCTTTTCGACT
AACCTTTAATACAACAAGATAGGGGCTTTTTTCTTCCCCGACAAGAATAG
GTAATTGGCCTTCTGGCATATTCATGATAAATGTGTAAATCTTGCGTTTG
ATCTCTTTTGGTGAAACAATTGTGTTTGACAAATTGCAATTGATTTTTGC
AAAACCAGGTGGCGTATCTTCATTTCTAATTTCGTACTTTTCCCCTCTAC
CGAAATCTGCTTGATTCATTCTATCGCAAATCATAAAGTCGTAATCAGTT
AATAAAGCATGTGTATTAGTCATAACACCCGCTTCTTGGCTCGCCTTGTA
GTTTACGGTCAAAGGTATGTTAAGTCTTTCGCATGTGCTTCCGGTTAACA
TAAGGTCGAATGATTCAGCATCTTCAAATTCTTTCGAAATTTCTTTGACA
GTCCATTTCATCGCTTTTTTAGCCTCACATTTGATATTATTTAATTCAGC
TAGAGTTGGAAAATCTTTAtcaattgtcaaaaatttttgtttcaatgaAA
CATTGCGTTTGAAATGAACATTGTAAAAGAGTTGGTATCGTTTGAATAAA
CGcttatgcaaaaaaaatctcctgccaagccaaattgAAAATGGTATCAG
TAACACTGAACAGATTATAAATAAAACGCGAAATATTTCGCTGTC Run BLAST on NCBI protein sequence of TCONS_00006196-protein >TCONS_00006196-protein ID=TCONS_00006196-protein|Name=TCONS_00006196-protein|organism=Clytia hemisphaerica|type=polypeptide|length=436bp
DSEIFRVLFIICSVLLIPFSIWLGRRFFLHKRLFKRYQLFYNVHFKRNVS
LKQKFLTIDKDFPTLAELNNIKCEAKKAMKWTVKEISKEFEDAESFDLML
TGSTCERLNIPLTVNYKASQEAGVMTNTHALLTDYDFMICDRMNQADFGR
GEKYEIRNEDTPPGFAKINCNLSNTIVSPKEIKRKIYTFIMNMPEGQLPI
LVGEEKSPYLVVLKVSRKGPAIRIKRHEGSSSSFLVDITFSIKAKKWPTN
SDWLTRTRKWPCSDVVEKIVQEGFHLVPKSHPKDKKETTWRFSFSKAEVT
LLNEIQPTARICFVCLKIIVKDFLIPCSDKLSTYYFKSIFMHVLEKTEPS
FWRENDIEDCFYWLFKHVSEAVKSKQCPHFWLNEINFFEELTDRDVNKLL
KLLTKIKQNPSAYIDDSFVRDDRNEFNEHSPLLQNV Run BLAST on NCBI transcript from alignment at sc0000063:379289..380783 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006196 ID=TCONS_00006196|Name=TCONS_00006196|organism=Clytia hemisphaerica|type=transcript|length=1495bp|location=Sequence derived from alignment at sc0000063:379289..380783 (Clytia hemisphaerica)
GACAGCGAAATATTTCGCGTTTTATTTATAATCTGTTCAGTGTTACTGAT
ACCATTTTcaatttggcttggcaggagattttttttgcataagCGTTTAT
TCAAACGATACCAACTCTTTTACAATGTTCATTTCAAACGCAATGTTtca
ttgaaacaaaaatttttgacaattgaTAAAGATTTTCCAACTCTAGCTGA
ATTAAATAATATCAAATGTGAGGCTAAAAAAGCGATGAAATGGACTGTCA
AAGAAATTTCGAAAGAATTTGAAGATGCTGAATCATTCGACCTTATGTTA
ACCGGAAGCACATGCGAAAGACTTAACATACCTTTGACCGTAAACTACAA
GGCGAGCCAAGAAGCGGGTGTTATGACTAATACACATGCTTTATTAACTG
ATTACGACTTTATGATTTGCGATAGAATGAATCAAGCAGATTTCGGTAGA
GGGGAAAAGTACGAAATTAGAAATGAAGATACGCCACCTGGTTTTGCAAA
AATCAATTGCAATTTGTCAAACACAATTGTTTCACCAAAAGAGATCAAAC
GCAAGATTTACACATTTATCATGAATATGCCAGAAGGCCAATTACCTATT
CTTGTCGGGGAAGAAAAAAGCCCCTATCTTGTTGTATTAAAGGTTAGTCG
AAAAGGACCAGCAATTAGAATAAAAAGACACGAAGGTAGTTCATCAAGCT
TCCTGGTAGATATAACTTTTTCCATCAAAGCTAAAAAATGGCCGACAAAT
TCCGATTGGCTAACAAGAACAAGAAAATGGCCTTGTTCCGATGTTGTTGA
GAAAATTGTACAAGAAGGGTTTCATTTGGTTCCGAAATCACATCCAAAAG
ATAAAAAGGAAACAACTTGGAGATTTTCATTCTCAAAAGCAGAAGTCACA
TTACTAAACGAAATCCAACCAACCGCTAGAATATGTTTCGTTTGTCtcaa
aattattgtcaaagaTTTTCTCATCCCATGCAGCGACAAGCTAAGTACGT
ATTATTTTAAAAGCATCTTCATGCATGTGTTAGAAAAAACAGAACCGAGT
TTTTGGCGGGAAAATGACATCGAGGATTGTTTCTATTGGCTGTTTAAACA
CGTGAGTGAAGCtgtcaaatcaaaacaatgtcCGCATTTCTGGTTGAATG
AAATCAATTTCTTTGAAGAACTGACAGATAGAGATGTGAACAAATTGTTA
AAACTGTTGACCAAAATCAAGCAAAATCCTTCAGCTTATATTGACGATTC
TTTTGTCAGAGACGATAGAAATGAATTCAACGAACATTCTCCTCTTCTAC
AAAATGTTTGAATTACAATATGCACAAAACAACTCTCTATCGTATTTATC
AGAAATTTTTAAGACTTACTATTATCCAAAAAAGGAATTCAGTTAGTTAT
TGTTAAACACTTTATTTTTACGCACATAATATTTTATTATGATACAAACT
TTGTCTGACAAAAACATTTCCAGTTTACCGAATCTTTCAAGCCAG Coding sequence (CDS) from alignment at sc0000063:379289..380783 >TCONS_00006196 ID=TCONS_00006196|Name=TCONS_00006196|organism=Clytia hemisphaerica|type=CDS|length=1311bp|location=Sequence derived from alignment at sc0000063:379289..380783 (Clytia hemisphaerica)
GACAGCGAAATATTTCGCGTTTTATTTATAATCTGTTCAGTGTTACTGAT
ACCATTTTcaatttggcttggcaggagattttttttgcataagCGTTTAT
TCAAACGATACCAACTCTTTTACAATGTTCATTTCAAACGCAATGTTtca
ttgaaacaaaaatttttgacaattgaTAAAGATTTTCCAACTCTAGCTGA
ATTAAATAATATCAAATGTGAGGCTAAAAAAGCGATGAAATGGACTGTCA
AAGAAATTTCGAAAGAATTTGAAGATGCTGAATCATTCGACCTTATGTTA
ACCGGAAGCACATGCGAAAGACTTAACATACCTTTGACCGTAAACTACAA
GGCGAGCCAAGAAGCGGGTGTTATGACTAATACACATGCTTTATTAACTG
ATTACGACTTTATGATTTGCGATAGAATGAATCAAGCAGATTTCGGTAGA
GGGGAAAAGTACGAAATTAGAAATGAAGATACGCCACCTGGTTTTGCAAA
AATCAATTGCAATTTGTCAAACACAATTGTTTCACCAAAAGAGATCAAAC
GCAAGATTTACACATTTATCATGAATATGCCAGAAGGCCAATTACCTATT
CTTGTCGGGGAAGAAAAAAGCCCCTATCTTGTTGTATTAAAGGTTAGTCG
AAAAGGACCAGCAATTAGAATAAAAAGACACGAAGGTAGTTCATCAAGCT
TCCTGGTAGATATAACTTTTTCCATCAAAGCTAAAAAATGGCCGACAAAT
TCCGATTGGCTAACAAGAACAAGAAAATGGCCTTGTTCCGATGTTGTTGA
GAAAATTGTACAAGAAGGGTTTCATTTGGTTCCGAAATCACATCCAAAAG
ATAAAAAGGAAACAACTTGGAGATTTTCATTCTCAAAAGCAGAAGTCACA
TTACTAAACGAAATCCAACCAACCGCTAGAATATGTTTCGTTTGTCtcaa
aattattgtcaaagaTTTTCTCATCCCATGCAGCGACAAGCTAAGTACGT
ATTATTTTAAAAGCATCTTCATGCATGTGTTAGAAAAAACAGAACCGAGT
TTTTGGCGGGAAAATGACATCGAGGATTGTTTCTATTGGCTGTTTAAACA
CGTGAGTGAAGCtgtcaaatcaaaacaatgtcCGCATTTCTGGTTGAATG
AAATCAATTTCTTTGAAGAACTGACAGATAGAGATGTGAACAAATTGTTA
AAACTGTTGACCAAAATCAAGCAAAATCCTTCAGCTTATATTGACGATTC
TTTTGTCAGAGACGATAGAAATGAATTCAACGAACATTCTCCTCTTCTAC
AAAATGTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006196-exon-sc0000063-1491911889:379289..380783 | TCONS_00006196-exon-sc0000063-1491911889:379289..380783 | Clytia hemisphaerica | exon |
| TCONS_00006196-exon-sc0000063-1510915933:379289..380783 | TCONS_00006196-exon-sc0000063-1510915933:379289..380783 | Clytia hemisphaerica | exon |
| TCONS_00006196-exon-sc0000063-1575043694:379289..380783 | TCONS_00006196-exon-sc0000063-1575043694:379289..380783 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000063 | supercontig | sc0000063:379289..380783 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR024810 | Mab-21_dom |
Blast
The following BLAST results are available for this feature:
|
