TCONS_00006186 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006186
Unique NameTCONS_00006186
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length411

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006186 ID=TCONS_00006186|Name=TCONS_00006186|organism=Clytia hemisphaerica|type=transcript|length=411bp
aacatttccatGTATTGTAATGACACATTGCGTCTATCACAAGGACTTAG
TGATGTTattattgatgatatatttgGAGTAGATGAAGTTGTCCATGCTT
AATCCACCGAGGCCTATCATGAGAGAGTTGAGCTTCTCATTCCAAAATGg
gacaatcttaaaaatctgagaaaaatgGAAAACCCAGATTTTCAAACTAT
TTCATTACCCACAAAAAGGAAGATGTGCTTAACCATACACTTCTCGAGAA
TAGTCGCAAGAACGGCTTCGGAGATTGCATCCAAACAACCAATCTTTCAG
AATCGATAAATGCAAAGATTAAAAGATGGCAGAACTTCGAGTTGAAAGAC
ATAGCATCCTTCATTGACAACATGAAATCCATTGTCCAGAAACAGCAATA
TGATGTGGGTG
Run BLAST on NCBI

transcript from alignment at sc0000063:153257..153667

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006186 ID=TCONS_00006186|Name=TCONS_00006186|organism=Clytia hemisphaerica|type=transcript|length=411bp|location=Sequence derived from alignment at sc0000063:153257..153667 (Clytia hemisphaerica)
CACCCACATCATATTGCTGTTTCTGGACAATGGATTTCATGTTGTCAATG
AAGGATGCTATGTCTTTCAACTCGAAGTTCTGCCATCTTTTAATCTTTGC
ATTTATCGATTCTGAAAGATTGGTTGTTTGGATGCAATCTCCGAAGCCGT
TCTTGCGACTATTCTCGAGAAGTGTATGGTTAAGCACATCTTCCTTTTTG
TGGGTAATGAAATAGTTTGAAAATCTGGGTTTTCcatttttctcagattt
ttaagattgtccCATTTTGGAATGAGAAGCTCAACTCTCTCATGATAGGC
CTCGGTGGATTAAGCATGGACAACTTCATCTACTCcaaatatatcatcaa
taatAACATCACTAAGTCCTTGTGATAGACGCAATGTGTCATTACAATAC
atggaaatgtt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003532XLOC_003532Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006186-exon-sc0000063-1491911889:153257..153667TCONS_00006186-exon-sc0000063-1491911889:153257..153667Clytia hemisphaericaexon
TCONS_00006186-exon-sc0000063-1510915933:153257..153667TCONS_00006186-exon-sc0000063-1510915933:153257..153667Clytia hemisphaericaexon
TCONS_00006186-exon-sc0000063-1575043694:153257..153667TCONS_00006186-exon-sc0000063-1575043694:153257..153667Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000063supercontigsc0000063:153257..153667 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.15971	0.526287	0.816734	0.897415	1.38311	1.23868	1.09719	1.70851	0.808048	1.3452	1.34436	0.856801	0.548296	1.1848	0.130328	0.88082	0.41053	0.263045	0.186701	0.322131	0.830681	0.413032	0	0.178182	5.01297	3.85863	0.159477	0.684232	0.389877	0.397222
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006186 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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