TCONS_00006179 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006179
Unique NameTCONS_00006179
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length666

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006179 ID=TCONS_00006179|Name=TCONS_00006179|organism=Clytia hemisphaerica|type=transcript|length=666bp
ttgtcCCTCCTTCACAGCCTATCAGCCCTCAAAGGAAATGACGACTATAA
AGGAATAAGCATTACGGAAGACCTGAAAGAGCAGTTCTAAAGGAATGGCT
GGATAAAGCAAATAATCTGAACCTAGACTATACTGAATGGGTACATCGCG
TTCGGGGAAACTCAAAAAACGGTTACGGCCTCAGGAAGTTTCGTCGAAGA
GAAAACCAACATTAACACCCTACACAACGAACCTTAAAGAAATACCaaga
aaaaatacaaacatAAAAATCACCAGCAAAACCAATGAAAACGACAAAAA
CAGTACAGACAACGATGAATCcaacaacaaagaaaaaggTGACAGTGAAA
GGTATGTAGATGGTCTCCCATTGCTTGACAAACCAACGGAAAAGTCTTAT
GAATTCGAAGAAAAGGCTCTGAGAAGAATCCGTATTAATAACGTCGCAAA
CGTCATCATAGGACATCTTAATATCAACTCGATAAGATACAGATTTGAAG
GTCTCAAATTAGTTATCAAAGATAACGTAGACATTTTTTTGGTATCTGAA
ACTAAGATTGACGAACCATTCCCTGAAAATCATTTCATTATTGAAAACTA
CTCGCGTCCATATCGCTTGGACAGGGACAAACAGGGAGGAGGTCTTCTAC
TCTACGTACGTCAGGG
Run BLAST on NCBI

protein sequence of TCONS_00006179-protein

>TCONS_00006179-protein ID=TCONS_00006179-protein|Name=TCONS_00006179-protein|organism=Clytia hemisphaerica|type=polypeptide|length=176bp
MGTSRSGKLKKRLRPQEVSSKRKPTLTPYTTNLKEIPRKNTNIKITSKTN
ENDKNSTDNDESNNKEKGDSERYVDGLPLLDKPTEKSYEFEEKALRRIRI
NNVANVIIGHLNINSIRYRFEGLKLVIKDNVDIFLVSETKIDEPFPENHF
IIENYSRPYRLDRDKQGGGLLLYVRQ
Run BLAST on NCBI

transcript from alignment at sc0000063:49474..50139

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006179 ID=TCONS_00006179|Name=TCONS_00006179|organism=Clytia hemisphaerica|type=transcript|length=666bp|location=Sequence derived from alignment at sc0000063:49474..50139 (Clytia hemisphaerica)
CCCTGACGTACGTAGAGTAGAAGACCTCCTCCCTGTTTGTCCCTGTCCAA
GCGATATGGACGCGAGTAGTTTTCAATAATGAAATGATTTTCAGGGAATG
GTTCGTCAATCTTAGTTTCAGATACCAAAAAAATGTCTACGTTATCTTTG
ATAACTAATTTGAGACCTTCAAATCTGTATCTTATCGAGTTGATATTAAG
ATGTCCTATGATGACGTTTGCGACGTTATTAATACGGATTCTTCTCAGAG
CCTTTTCTTCGAATTCATAAGACTTTTCCGTTGGTTTGTCAAGCAATGGG
AGACCATCTACATACCTTTCACTGTCAcctttttctttgttgttgGATTC
ATCGTTGTCTGTACTGTTTTTGTCGTTTTCATTGGTTTTGCTGGTGATTT
TTatgtttgtattttttcttGGTATTTCTTTAAGGTTCGTTGTGTAGGGT
GTTAATGTTGGTTTTCTCTTCGACGAAACTTCCTGAGGCCGTAACCGTTT
TTTGAGTTTCCCCGAACGCGATGTACCCATTCAGTATAGTCTAGGTTCAG
ATTATTTGCTTTATCCAGCCATTCCTTTAGAACTGCTCTTTCAGGTCTTC
CGTAATGCTTATTCCTTTATAGTCGTCATTTCCTTTGAGGGCTGATAGGC
TGTGAAGGAGGgacaa

Coding sequence (CDS) from alignment at sc0000063:49474..50139

>TCONS_00006179 ID=TCONS_00006179|Name=TCONS_00006179|organism=Clytia hemisphaerica|type=CDS|length=528bp|location=Sequence derived from alignment at sc0000063:49474..50139 (Clytia hemisphaerica)
CTGACGTACGTAGAGTAGAAGACCTCCTCCCTGTTTGTCCCTGTCCAAGC
GATATGGACGCGAGTAGTTTTCAATAATGAAATGATTTTCAGGGAATGGT
TCGTCAATCTTAGTTTCAGATACCAAAAAAATGTCTACGTTATCTTTGAT
AACTAATTTGAGACCTTCAAATCTGTATCTTATCGAGTTGATATTAAGAT
GTCCTATGATGACGTTTGCGACGTTATTAATACGGATTCTTCTCAGAGCC
TTTTCTTCGAATTCATAAGACTTTTCCGTTGGTTTGTCAAGCAATGGGAG
ACCATCTACATACCTTTCACTGTCAcctttttctttgttgttgGATTCAT
CGTTGTCTGTACTGTTTTTGTCGTTTTCATTGGTTTTGCTGGTGATTTTT
atgtttgtattttttcttGGTATTTCTTTAAGGTTCGTTGTGTAGGGTGT
TAATGTTGGTTTTCTCTTCGACGAAACTTCCTGAGGCCGTAACCGTTTTT
TGAGTTTCCCCGAACGCGATGTACCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003525XLOC_003525Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006179-proteinTCONS_00006179-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006179-exon-sc0000063-1491911889:49474..50139TCONS_00006179-exon-sc0000063-1491911889:49474..50139Clytia hemisphaericaexon
TCONS_00006179-exon-sc0000063-1510915933:49474..50139TCONS_00006179-exon-sc0000063-1510915933:49474..50139Clytia hemisphaericaexon
TCONS_00006179-exon-sc0000063-1575043694:49474..50139TCONS_00006179-exon-sc0000063-1575043694:49474..50139Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000063supercontigsc0000063:49474..50139 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.872577	0.410988	0.995782	1.42005	1.1516	0.403388	0.729489	0.585574	0.288841	0.265387	0.621285	0.386666	0.52833	0.573347	0.236198	0.156061	0.383571	0.510597	0.364782	0.582198	0.53536	0.219666	0	0.161848	1.72854	1.10514	0.319346	0.590282	0.172331	0.448663
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006179 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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