TCONS_00006176 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006176
Unique NameTCONS_00006176
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length294

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006176 ID=TCONS_00006176|Name=TCONS_00006176|organism=Clytia hemisphaerica|type=transcript|length=294bp
agttttatttGGCTTTGCTTGGAACCCTTTGTATTGACTCGTCCATTATA
AAATCTATTTTCGGAGCATGGGCTGTGTTGTCATTCGGTCACACAGTTAT
TGCAGCCATTATGCTATATCGTGATGACAGTTTAAGATTAACTTTTGGAG
GAAGCTATGAAAGAAAGATTGCTTGGGAagacaaaatcaaacaaaatata
CGAGCAGCGCCTGAAGTTATAACAAATTGTGAAGTGAGAGAACCAAAACC
GatctggaaattttggaaaacaaGAAAAGTCATTTGGAGAGAAA
Run BLAST on NCBI

transcript from alignment at sc0000063:1242..1535

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006176 ID=TCONS_00006176|Name=TCONS_00006176|organism=Clytia hemisphaerica|type=transcript|length=294bp|location=Sequence derived from alignment at sc0000063:1242..1535 (Clytia hemisphaerica)
TTTCTCTCCAAATGACTTTTCttgttttccaaaatttccagatCGGTTTT
GGTTCTCTCACTTCACAATTTGTTATAACTTCAGGCGCTGCTCGtatatt
ttgtttgattttgtctTCCCAAGCAATCTTTCTTTCATAGCTTCCTCCAA
AAGTTAATCTTAAACTGTCATCACGATATAGCATAATGGCTGCAATAACT
GTGTGACCGAATGACAACACAGCCCATGCTCCGAAAATAGATTTTATAAT
GGACGAGTCAATACAAAGGGTTCCAAGCAAAGCCaaataaaact
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003522XLOC_003522Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006176-exon-sc0000063-1491911889:1242..1535TCONS_00006176-exon-sc0000063-1491911889:1242..1535Clytia hemisphaericaexon
TCONS_00006176-exon-sc0000063-1510915933:1242..1535TCONS_00006176-exon-sc0000063-1510915933:1242..1535Clytia hemisphaericaexon
TCONS_00006176-exon-sc0000063-1575043694:1242..1535TCONS_00006176-exon-sc0000063-1575043694:1242..1535Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000063supercontigsc0000063:1242..1535 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.3253	13.4411	5.67175	3.50512	2.19946	0.322611	0	0.265375	0.559192	2.5708	0	0	7.6314	5.26433	2.17089	9.28009	1.82075	4.55042	0	3.60771	0	0	0	5.97937	12.3276	8.47248	2.40422	3.32608	0.517721	0.314628
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006176 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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