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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006175 ID=TCONS_00006175|Name=TCONS_00006175|organism=Clytia hemisphaerica|type=transcript|length=2557bp
ttattattttagaCATCTTACTCTACCCTACTAGGTCAGGTAACCAGTGC
CAATTTTTATAAACCGTCTACTAAACAACTTTGCACAagtaaaataaaga
aagaaaagtcaATCTATAAATTTGCTTCAGCTTTATTATTTGCGCAATAT
TTATTATACGTTATACTTTATACAAAACCTTTTTTGTTTCAtagtaaaag
tgaaaaatatgagTGGTGAAAGTCAGCCTTATCGAAATCGAAGAACTGGG
CATGGTAATAATGCAAATTCAGAACTTGGGCCAAATCAAGTCCATCATGG
CGGAGCTAGAGCTAGAAATGTAAATCAAGCTGTTGGTCAAGTGGCTGGTG
ATCTATTAGAACTTGACTTGAATGGAAGAAGAGACTCAGCTGTTATCTCA
AATGGAAGAAGAGATTCTGTAAATGAACCTTTTGCGCCTCTTAATCCTCG
TAATTATCAGAATCTACCTGAATTGGATAACAATCCAGTAATACCACAAA
TTCCACAAGGATCACCTCCACCTAATCCATTGAACCCACCTGTTAACAAT
GTTCCTGTGCGAGAGCACCAAGCTGTAGCGACCAGTGCTGAGCAGCAGCA
CATTATGTCGCTGTCAAACACTCAAAATTGGCAATCACTACACCCTACAG
TTAGAGATCGAATccgttttctttttaataatgaGATTTTAAGTGACGTT
TGTTTCATCTTAGGCAATGGTACTAGCGAGATACAGCGCATTCCTGCGCA
CAAATTCATTTTATCTATTGGTAGTGTTGTTTTCAATGCCATGTTCAATG
GTGGGTTTGCAACCGGTTCTATATGTCATGAAGTTGAAATTCCTGATATA
GAGCCTACCTCGTTTTTATCattgttgaaatttctttacaccGATGAGGT
ACTGATCGGACCTGACACAGTGATGAGTATTTTATATGGTGCTAAGAAGT
ATGCAGTTCCTACACTGGAACAAAAATgtgttgattttttgaaaagaaat
ttaggtcCTGACAATGCATTTACATTGCTATCACAGGCTAGATTGTTTGA
CGAACCACAGCTGACAGATCTTTGTTTAACATGTATTGATAAATCAACTG
TTGATTCATTTGATGCTGAAGGATTTACAGACATTGATGTTGATACATTG
AAATCAGTGTTGCAAAGAGACTCTTTAAGTGCTCGAGAGAGCCAGTTATT
TGAAGCTGTCGTTAGATGGGCAGACCACGAATGTCGAAGGAAAGATATCG
CAAACTCTCCAGTCAATAAAAGatCCGTTTTGACTGATGCACTGTATCTG
ATCAGATTTCCACTGATGACCTTAGAAGAATTCGCAAACAAAGTAGCCCA
ATCTGGAATCCTAACCGACACTGAACTTGTcaatttatttttacatttca
cAGTCAATCCAAAACCTTCTACTAAATTCCCAGATCGCCCAAGAAGATGT
TTAGCTGGTAAAGAAAAATCAGTGGTCAGATTCTTAAAAACCGAAGCTAG
ATGGGGCTACAGTGGTACAAGTGATCGTATTAAATTTTCTGTTAACCGCC
GCATATTTGTAGTCGGTCTTGGCTTATATGGATCTATTAACGTGCCAACC
GATTATGAGGTCAATATCCAGATTATTAATTCTGATTCTGGAAAAGTTAT
AGGTACAAACGATACAGCTTTCAGTTGTGATGGTACTGAATCGCTTAACA
GAGTTATGTTTAAAGAGCCCATTGAAATAGCACCGTTTGTCGGGTATACA
GCTTGTGGTACTTTGCGTGGGCCAGATTCATTTTATGGTACTAAAGGATT
GAAGAAGGTTGTGATCGAGTTACCTGATCGAGAAAAAGTGGAATTTAAAT
TCTCATACGCTGCTGGTAATAATAATGGAACTTCTGTTGATGATGGGCAG
GTCCCAGAAATCATATTTTACACGTGACCAGATTCTGCTATTAAGTCGAA
AAATGTGAACAGTTGTACATATTATATAATGAAGAATAGTGACCTATAAA
CAACATAGAATATCGGATTGATATTTCAAAGACAGGAAAATATGTAATCG
TGAATGGATTCTTACAACTTGTTGATAAAAGCTGTAAAACATCTCACAGG
GATTTCACAAATTTTCAAGAATGTGACTCCGATGTTATTAAATTTGGTTT
TGATTGGATTGATCATTGAATACTGCATTTGAATTATCAGTGTTGCATCA
TTTGATGATCCAAATGGTTGGGGTTTTGTCACTGGTCTATCTCCAATCTC
CTTCCATTTTACTTGAACAGATTGGTTATCCCTATTTCGACCACTTTACT
ATTAGACGTTAGATGACCATAATGTTTGTTTGATAGGAAGAGGTGAAAAT
TGGTTCAAAACCTTCATTGTCGACTAGATGATTTATTTAGAACTAAGTTT
CAATCTTGCAGCATCCTTCCCAATAGTGCTAGATTTCTATTAAAGAAATA
TTCTGATTTTATATCAATGTGAGATATTTTTAATACGCAATTCAAGAATT
AAATAGAATAAAAAGTGGAAATAACTTTTGATGGATTATTACATTAGCTT
TCCTTGG Run BLAST on NCBI transcript from alignment at sc0000063:679737..682653- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006175 ID=TCONS_00006175|Name=TCONS_00006175|organism=Clytia hemisphaerica|type=transcript|length=2917bp|location=Sequence derived from alignment at sc0000063:679737..682653- (Clytia hemisphaerica)
TTATTATTTTAGACATCTTACTCTACCCTACTAGGTCAGGTAACCAGTGC
CAATTTTTATAAACCGTCTACTAAACAACTTTGCACAAGTAAAATAAAGA
AAGAAAAGTCAATCTATAAATTTGCTTCAGCTTTATTATTTGCGCAATAT
TTATTATACGTTATACTTTATACAAAACCTTTTTTGTTTCATAGTAAAAG
TGAAAAATATGAGTGGTGAAAGTCAGCCTTATCGAAATCGAAGAACTGGG
CATGGTAATAATGCAAATTCAGAACTTGGGCCAAATCAAGTCCATCATGG
CGGAGCTAGAGCTAGAAATGTAAATCAAGCTGTTGGTCAAGTGGCTGGTG
ATCTATTAGAACTTGACTTGAATGGAAGAAGAGACTCAGCTGTTATCTCA
AATGGAAGAAGAGATTCTGTAAATGAACCTTTTGCGCCTCTTAATCCTCG
TAATTATCAGAATCTACCTGAATTGGATAACAATCCAGTAATACCACAAA
TTCCACAAGGATCACCTCCACCTAATCCATTGAACCCACCTGTTAACAAT
GTTCCTGTGCGAGAGCACCAAGCTGTAGCGACCAGTGCTGAGCAGCAGCA
CATTATGTCGCTGTCAAACACTCAAAATTGGCAATCACTACACCCTACAG
TTAGAGATCGAATCCGTTTTCTTTTTAATAATGAGATTTTAAGTGACGTT
TGTTTCATCTTAGGCAATGGTACTAGCGAGATACAGCGCATTCCTGCGCA
CAAATTCATTTTATCTATTGGTAGTGTTGTTTTCAATGCCATGTTCAATG
GTGGGTTTGCAACCGGTTCTATATGTCATGAAGTTGAAATTCCTGATATA
GAGCCTACCTCGTTTTTATCATTGTTGAAATTTCTTTACACCGATGAGGT
ACTGATCGGACCTGACACAGTGATGAGTATTTTATATGGTGCTAAGAAGT
ATGCAGTTCCTACACTGGAACAAAAATGTGTTGATTTTTTGAAAAGAAAT
TTAGGTCCTGACAATGCATTTACATTGCTATCACAGGCTAGATTGTTTGA
CGAACCACAGCTGACAGATCTTTGTTTAACATGTATTGATAAATCAACTG
TTGATTCATTTGATGCTGAAGGATTTACAGACATTGATGTTGATACATTG
AAATCAGTGTTGCAAAGAGACTCTTTAAGTGCTCGAGAGAGCCAGTTATT
TGAAGCTGTCGTTAGATGGGCAGACCACGAATGTCGAAGGAAAGATATCG
CAAACTCTCCAGTCAATAAAAGGTGCTTGATTTTGCTCCTCTCTGATTAT
ATTATTTTATCCTGTAAGAAGACACCATCATTGGATGTTTCCAGATCTCT
ACCGTTTATTGAGATTTTGAAATGCATTATTTGACCGGATTCTAAAAATT
AATTTATTCATTTATTCGATCAACCAGTACAGTAAAACACTTTTTAAGTT
TTATTAAGAGCACTATTCTTGTATTTAAGAAAATAATTTCATAAAAATTC
AAATTAGATCATACCATCATTATTTCTTAATTAACTTAAAAGTCTTTATT
TAAAAAAATTGACAACCATAATTTGAATTGGGCTTACACAGTTCGAATGA
TAACAACAAAACCTTTTCTTCTTTCTTTTTAGATCCGTTTTGACTGATGC
ACTGTATCTGATCAGATTTCCACTGATGACCTTAGAAGAATTCGCAAACA
AAGTAGCCCAATCTGGAATCCTAACCGACACTGAACTTGTCAATTTATTT
TTACATTTCACAGTCAATCCAAAACCTTCTACTAAATTCCCAGATCGCCC
AAGAAGATGTTTAGCTGGTAAAGAAAAATCAGTGGTCAGATTCTTAAAAA
CCGAAGCTAGATGGGGCTACAGTGGTACAAGTGATCGTATTAAATTTTCT
GTTAACCGCCGCATATTTGTAGTCGGTCTTGGCTTATATGGATCTATTAA
CGTGCCAACCGATTATGAGGTCAATATCCAGATTATTAATTCTGATTCTG
GAAAAGTTATAGGTACAAACGATACAGCTTTCAGTTGTGATGGTACTGAA
TCGCTTAACAGAGTTATGTTTAAAGAGCCCATTGAAATAGCACCGTTTGT
CGGGTATACAGCTTGTGGTACTTTGCGTGGGCCAGATTCATTTTATGGTA
CTAAAGGATTGAAGAAGGTTGTGATCGAGTTACCTGATCGAGAAAAAGTG
GAATTTAAATTCTCATACGCTGCTGGTAATAATAATGGAACTTCTGTTGA
TGATGGGCAGGTCCCAGAAATCATATTTTACACGTGACCAGATTCTGCTA
TTAAGTCGAAAAATGTGAACAGTTGTACATATTATATAATGAAGAATAGT
GACCTATAAACAACATAGAATATCGGATTGATATTTCAAAGACAGGAAAA
TATGTAATCGTGAATGGATTCTTACAACTTGTTGATAAAAGCTGTAAAAC
ATCTCACAGGGATTTCACAAATTTTCAAGAATGTGACTCCGATGTTATTA
AATTTGGTTTTGATTGGATTGATCATTGAATACTGCATTTGAATTATCAG
TGTTGCATCATTTGATGATCCAAATGGTTGGGGTTTTGTCACTGGTCTAT
CTCCAATCTCCTTCCATTTTACTTGAACAGATTGGTTATCCCTATTTCGA
CCACTTTACTATTAGACGTTAGATGACCATAATGTTTGTTTGATAGGAAG
AGGTGAAAATTGGTTCAAAACCTTCATTGTCGACTAGATGATTTATTTAG
AACTAAGTTTCAATCTTGCAGCATCCTTCCCAATAGTGCTAGATTTCTAT
TAAAGAAATATTCTGATTTTATATCAATGTGAGATATTTTTAATACGCAA
TTCAAGAATTAAATAGAATAAAAAGTGGAAATAACTTTTGATGGATTATT
ACATTAGCTTTCCTTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006175-exon-sc0000063-1575043694:681382..682653 | TCONS_00006175-exon-sc0000063-1575043694:681382..682653 | Clytia hemisphaerica | exon |
| TCONS_00006175-exon-sc0000063-1575043694:679737..681021 | TCONS_00006175-exon-sc0000063-1575043694:679737..681021 | Clytia hemisphaerica | exon |
| TCONS_00006175-exon-sc0000063-1510915933:681382..682653 | TCONS_00006175-exon-sc0000063-1510915933:681382..682653 | Clytia hemisphaerica | exon |
| TCONS_00006175-exon-sc0000063-1510915933:679737..681021 | TCONS_00006175-exon-sc0000063-1510915933:679737..681021 | Clytia hemisphaerica | exon |
| TCONS_00006175-exon-sc0000063-1491911889:681382..682653 | TCONS_00006175-exon-sc0000063-1491911889:681382..682653 | Clytia hemisphaerica | exon |
| TCONS_00006175-exon-sc0000063-1491911889:679737..681021 | TCONS_00006175-exon-sc0000063-1491911889:679737..681021 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000063 | supercontig | sc0000063:679737..682653 - |
Blast
BLAST of TCONS_00006175 vs. Swiss-Prot (Human)
Match: BTBD2 (BTB/POZ domain-containing protein 2 OS=Homo sapiens GN=BTBD2 PE=1 SV=1) HSP 1 Score: 604.364 bits (1557), Expect = 0.000e+0 Identity = 290/434 (66.82%), Postives = 348/434 (80.18%), Query Frame = 2
Query: 626 NWQSLHPTVRDRIRFLFNNEILSDVCFILGNGTSEIQRIPAHKFILSIGSVVFNAMFNGGFATGSICHEVEIPDIEPTSFLSLLKFLYTDEVLIGPDTVMSILYGAKKYAVPTLEQKCVDFLKRNLGPDNAFTLLSQARLFDEPQLTDLCLTCIDKSTVDSFDAEGFTDIDVDTLKSVLQRDSLSARESQLFEAVVRWADHECRRKDIANSPVNKRSVLTDALYLIRFPLMTLEEFANKVAQSGILTDTELVNLFLHFTVNPKPSTKFPDRPRRCLAGKEKSVVRFLKTEARWGYSGTSDRIKFSVNRRIFVVGLGLYGSINVPTDYEVNIQIINSDSGKVIGTNDTAFSCDGTESLNRVMFKEPIEIAPFVGYTACGTLRGPDSFYGTKGLKKVVIELPDR-EKVEFKFSYAAGNNNGTSVDDGQVPEIIFYT 1924
NWQ+ PTV++R FLFNNE+L DV F++G G S QRIPAH+F+L++GS VF+AMFNGG AT S E+E+PD+EP +FL+LLKFLY+DEV IGP+TVM+ LY AKKYAVP LE CV+FLK+NL DNAF LL+QARLFDEPQL LCL IDK+T D+ AEGFTDID+DTL +VL+RD+L RE +LF AVVRW++ EC+R+ + +P N+R VL AL LIRFPLMT+EEFA AQSGIL D E+V+LFLHFTVNPKP +F DRPR CL GKE S+ RF + E+RWGYSGTSDRI+FSVN+RIFVVG GLYGSI+ PTDY+VNIQII++DS V+G NDT FSCDG+ S RVMFKEP+E+ P V YTAC TL+GPDS YGTKGL+KV E P K F F YAAGNNNGTSV+DGQ+PE+IFYT
Sbjct: 95 NWQASKPTVQERFAFLFNNEVLCDVHFLVGKGLSS-QRIPAHRFVLAVGSAVFDAMFNGGMATTST--EIELPDVEPAAFLALLKFLYSDEVQIGPETVMTTLYTAKKYAVPALEAHCVEFLKKNLRADNAFMLLTQARLFDEPQLASLCLENIDKNTADAITAEGFTDIDLDTLVAVLERDTLGIREVRLFNAVVRWSEAECQRQQLQVTPENRRKVLGKALGLIRFPLMTIEEFAAGPAQSGILVDREVVSLFLHFTVNPKPRVEFIDRPRCCLRGKECSINRFQQVESRWGYSGTSDRIRFSVNKRIFVVGFGLYGSIHGPTDYQVNIQIIHTDSNTVLGQNDTGFSCDGSASTFRVMFKEPVEVLPNVNYTACATLKGPDSHYGTKGLRKVTHESPTTGAKTCFTFCYAAGNNNGTSVEDGQIPEVIFYT 525
The following BLAST results are available for this feature:
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