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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006171 ID=TCONS_00006171|Name=TCONS_00006171|organism=Clytia hemisphaerica|type=transcript|length=1140bp
gttttttagttttttagtcaaagtttatttcaaattaaaaaaccaCAGCG
GATATTACCACAGAACCAAACAGAGGAATACTTGGAATAAAAAACAAGGA
ACAAggaacaaaaaacaaaatatagtCCTATATTGTGGCACCTTTGTAAA
GGAATTCATCCCGATTTTCCCGATATTCATGATAAATTGATATTTGGATT
ATAAATTATGGATACAACTCGTCGGACCTACGAAGGAATCAAATTGCAAA
TCTCTAATTTAGACTTAGAAATTGATCAAAATACGTTATACTTAGAATGC
TCAAAATATGGAGTAGTCCTGAATACTGAAATCAAGGAAGGTTCCGAACA
TTGTCCGGTCAAAGCAGCCACTGTGACTTATTACAGCCCCGGTGAAGCCC
AAACTGCTATGAGATCGTTAAATGGGAAAACCTTACGGAAGAATATTTTG
TATGTTGGGCAACCACCCCGTGAAAGAAGACCAAGATCAAGGAGTACTAA
CTCATTTGGCAAgTATGGATTTTCGACAAATCTAAATGAATCATGGAGTG
AAGTAAAATCCGTTTCAAGCCGACAACAAAGCAAACTACTAGAAAATCTA
CAACATTCAAGCAATGGACTATCATCATCTTGGGGAAATGATCGTTTTCG
ACCGAATCAATCATACGGGAATTCTTTAAttgatttcaagaaaaatatta
cTAAAGGTGGTTGTTGTTCAAAGTGCTCACGTTCTGGTTCACATTCTCAT
CATTCTTCCGGTGAATTAAGATAAAGTTTGTGTTCAAATCTTTGTATATT
TTGTCTGGTTGATGGAGCTACATTTACAAAAGTTTTCGCCCATAATATTG
TAAAACTGATTTGATTTATCAAGGCAAAGTATACGAATTATGGGTCAGAG
ACTCTCGCGTTCAAGCTCACATTCTTTCTGGTGAATTAAGATAAAGTTTG
TGTTCAAAtatctgtttattttgtctGGTTGATGGAGGCACATTTACAAA
AGTCTTCCACCATAACATTGTAAAATGGATTTGGTTTATCGGTGAAAATG
CAGTTGTATTACTCCGTGACCCATATTGTCATGTTTTAGCTTTTTCCTTG
TTAAGTTTGTGgttaaaattatataaatacCGTAGCATTT Run BLAST on NCBI protein sequence of TCONS_00006171-protein >TCONS_00006171-protein ID=TCONS_00006171-protein|Name=TCONS_00006171-protein|organism=Clytia hemisphaerica|type=polypeptide|length=188bp
MDTTRRTYEGIKLQISNLDLEIDQNTLYLECSKYGVVLNTEIKEGSEHCP
VKAATVTYYSPGEAQTAMRSLNGKTLRKNILYVGQPPRERRPRSRSTNSF
GKYGFSTNLNESWSEVKSVSSRQQSKLLENLQHSSNGLSSSWGNDRFRPN
QSYGNSLIDFKKNITKGGCCSKCSRSGSHSHHSSGELR Run BLAST on NCBI transcript from alignment at sc0000063:620089..621702- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006171 ID=TCONS_00006171|Name=TCONS_00006171|organism=Clytia hemisphaerica|type=transcript|length=1614bp|location=Sequence derived from alignment at sc0000063:620089..621702- (Clytia hemisphaerica)
GTTTTTTAGTTTTTTAGTCAAAGTTTATTTCAAATTAAAAAACCACAGCG
GATATTACCACAGAACCAAACAGAGGAATACTTGGAATAAAAAACAAGGA
ACAAGGAACAAAAAACAAAATATAGTCCTATATTGTGGCACCTTTGTAAA
GGAATTCATCCCGATTTTCCCGATATTCATGATAAATTGATATTTGGATT
ATAAATTATGGATACAACTCGTCGGACCTACGAAGGAATCAAATTGCAAA
TCTCTAATTTAGACTTAGAAATTGATCAAAATACGTTATACTTAGAATGC
TCAAAATATGGAGTAGTCCTGAATACTGAAATCAAGGAAGGTTCCGAACA
TTGTCCGGTCAAAGCAGCCACTGTGACTTATTACAGCCCCGGTGAAGCCC
AAACTGCTATGAGATCGTTAAATGGGAAAACCTTACGGAAGAATATTTTG
TATGTTGGGCAACCACCCCGTGAAAGAAGACCAAGATCAAGGAGTACTAA
CTCATTTGGCAAGGTAAGTTTTTCAAAAACCTTATTGGTCCTTTTTTACG
CTATCCAAAAGATCATGAAGTACAAATATTATTAAATTTTTCCGGATTCT
TTGACTTGTTTTGACTCTTTTTTCCTTTTCATAGCGGCCCTAAGTTCATT
TTTTGTGATAAAAAAATTTCAGCTAAGTCTTAAGAAGGGTCAATTTTTTT
CAAGTTATCAGCTTTTTATTATCTTCGACAATAACCCCACCCGTCAACTG
GCAATCTAGTATCCCCCGGAAACCAACTATTGCTTAATTTCATCGTAAAT
CTGCTTCAAGCCCAATTTGATTTTTTTTTGCTATCTTTTGGCGTAATTGT
TTTTAATAATTTTTATTATGAAAGCAGAAATCTGGCGTCACTACCCGATG
AGGGGTGTCGTAGGGGAGGGGTGCCATGGGGGAAGGGGAGACTTTTTAAA
CTATACATCTTGCTTTGTTTATTATCATTTTTTTTAGTATGGATTTTCGA
CAAATCTAAATGAATCATGGAGTGAAGTAAAATCCGTTTCAAGCCGACAA
CAAAGCAAACTACTAGAAAATCTACAACATTCAAGCAATGGACTATCATC
ATCTTGGGGAAATGATCGTTTTCGACCGAATCAATCATACGGGAATTCTT
TAATTGATTTCAAGAAAAATATTACTAAAGGTGGTTGTTGTTCAAAGTGC
TCACGTTCTGGTTCACATTCTCATCATTCTTCCGGTGAATTAAGATAAAG
TTTGTGTTCAAATCTTTGTATATTTTGTCTGGTTGATGGAGCTACATTTA
CAAAAGTTTTCGCCCATAATATTGTAAAACTGATTTGATTTATCAAGGCA
AAGTATACGAATTATGGGTCAGAGACTCTCGCGTTCAAGCTCACATTCTT
TCTGGTGAATTAAGATAAAGTTTGTGTTCAAATATCTGTTTATTTTGTCT
GGTTGATGGAGGCACATTTACAAAAGTCTTCCACCATAACATTGTAAAAT
GGATTTGGTTTATCGGTGAAAATGCAGTTGTATTACTCCGTGACCCATAT
TGTCATGTTTTAGCTTTTTCCTTGTTAAGTTTGTGGTTAAAATTATATAA
ATACCGTAGCATTT Coding sequence (CDS) from alignment at sc0000063:620089..621702- >TCONS_00006171 ID=TCONS_00006171|Name=TCONS_00006171|organism=Clytia hemisphaerica|type=CDS|length=1134bp|location=Sequence derived from alignment at sc0000063:620089..621702- (Clytia hemisphaerica)
TATGGATTTTCGACAAATCTAAATGAATCATGGAGTGAAGTAAAATCCGT
TTCAAGCCGACAACAAAGCAAACTACTAGAAAATCTACAACATTCAAGCA
ATGGACTATCATCATCTTGGGGAAATGATCGTTTTCGACCGAATCAATCA
TACGGGAATTCTTTAATTGATTTCAAGAAAAATATTACTAAAGGTGGTTG
TTGTTCAAAGTGCTCACGTTCTGGTTCACATTCTCATCATTCTTCCGGTG
AATTAAGATAAATGGATACAACTCGTCGGACCTACGAAGGAATCAAATTG
CAAATCTCTAATTTAGACTTAGAAATTGATCAAAATACGTTATACTTAGA
ATGCTCAAAATATGGAGTAGTCCTGAATACTGAAATCAAGGAAGGTTCCG
AACATTGTCCGGTCAAAGCAGCCACTGTGACTTATTACAGCCCCGGTGAA
GCCCAAACTGCTATGAGATCGTTAAATGGGAAAACCTTACGGAAGAATAT
TTTGTATGTTGGGCAACCACCCCGTGAAAGAAGACCAAGATCAAGGAGTA
CTAACTCATTTGGCAAGTATGGATTTTCGACAAATCTAAATGAATCATGG
AGTGAAGTAAAATCCGTTTCAAGCCGACAACAAAGCAAACTACTAGAAAA
TCTACAACATTCAAGCAATGGACTATCATCATCTTGGGGAAATGATCGTT
TTCGACCGAATCAATCATACGGGAATTCTTTAATTGATTTCAAGAAAAAT
ATTACTAAAGGTGGTTGTTGTTCAAAGTGCTCACGTTCTGGTTCACATTC
TCATCATTCTTCCGGTGAATTAAGATAAATGGATACAACTCGTCGGACCT
ACGAAGGAATCAAATTGCAAATCTCTAATTTAGACTTAGAAATTGATCAA
AATACGTTATACTTAGAATGCTCAAAATATGGAGTAGTCCTGAATACTGA
AATCAAGGAAGGTTCCGAACATTGTCCGGTCAAAGCAGCCACTGTGACTT
ATTACAGCCCCGGTGAAGCCCAAACTGCTATGAGATCGTTAAATGGGAAA
ACCTTACGGAAGAATATTTTGTATGTTGGGCAACCACCCCGTGAAAGAAG
ACCAAGATCAAGGAGTACTAACTCATTTGGCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006171-exon-sc0000063-1575043694:621190..621702 | TCONS_00006171-exon-sc0000063-1575043694:621190..621702 | Clytia hemisphaerica | exon |
| TCONS_00006171-exon-sc0000063-1575043694:620089..620715 | TCONS_00006171-exon-sc0000063-1575043694:620089..620715 | Clytia hemisphaerica | exon |
| TCONS_00006171-exon-sc0000063-1510915933:621190..621702 | TCONS_00006171-exon-sc0000063-1510915933:621190..621702 | Clytia hemisphaerica | exon |
| TCONS_00006171-exon-sc0000063-1510915933:620089..620715 | TCONS_00006171-exon-sc0000063-1510915933:620089..620715 | Clytia hemisphaerica | exon |
| TCONS_00006171-exon-sc0000063-1491911889:621190..621702 | TCONS_00006171-exon-sc0000063-1491911889:621190..621702 | Clytia hemisphaerica | exon |
| TCONS_00006171-exon-sc0000063-1491911889:620089..620715 | TCONS_00006171-exon-sc0000063-1491911889:620089..620715 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000063 | supercontig | sc0000063:620089..621702 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000504 | RRM_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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