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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006167 ID=TCONS_00006167|Name=TCONS_00006167|organism=Clytia hemisphaerica|type=transcript|length=3018bpRun BLAST on NCBI transcript from alignment at sc0000063:559097..576762- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006167 ID=TCONS_00006167|Name=TCONS_00006167|organism=Clytia hemisphaerica|type=transcript|length=17666bp|location=Sequence derived from alignment at sc0000063:559097..576762- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00006167 vs. Swiss-Prot (Human)
Match: NAC2 (Sodium/calcium exchanger 2 OS=Homo sapiens GN=SLC8A2 PE=2 SV=2) HSP 1 Score: 191.43 bits (485), Expect = 6.152e-50 Identity = 149/452 (32.96%), Postives = 214/452 (47.35%), Query Frame = 2
Query: 1769 NSSF-VSYETREGNAKYQKDFVASAGTLVFKETEYKKTIEIQLTDRSKQE-------RTTSSTSSDFYIVLKDPCHDSTLGD---PSIAHVSIIDDNEPGEFLFQNATAHVQYRLCNVAMVTTTVVRIRGSDGPITVFYRTINGTAIGGDEIDLNKQTCDYEFVEKGMLHFENGETSKNIMIKT--NPKADKSRTFIIALYH---------------------------------VTGSAKIGHRCAAVVSLSSENDEIVDQITSLTENEEESVLTRKQEFRKQIKESMTLDED--------------PSIIDMILHVLCFFWKVAFAFIPPRSVWGGWASFIVSXXXXXXXXXXXEQFAKLLGCVIGLHVSVTGITLVALGTSMPDTFASKTAALQDDSADAAIGNITGSNSVNVFLGLGLPWVIKATYLYSKNQKLEIQGENLLFAVLVF 2944
NS+F V Y T +G+AK D+ S GTLVFK E +K + I + D E R + D + + G P +A V+I+DD+ G F FQ+ HV C + V VVR G+ G + + YRT++GTA GG + C G L F + ET K + +K + + +K F I L G +G C V + E+ + + + L + +++ +R+Q E++T+ PS D ++H L FWKV FA +PP GWA F VS+L++G+L AL+ A GC +GL SV + VALGTS+PDTFASK AALQD ADA+IGN+TGSN+VNVFLGLG+ W + A Y + + E++ L F+V +F
Sbjct: 424 NSTFYVDYRTEDGSAKAGSDYEYSEGTLVFKPGETQKELRIGIIDDDIFEEDEHFFVRLLNLRVGDAQGMFEPDGGGRPKGRLVAPLLATVTILDDDHAGIFSFQDRLLHVSE--C-MGTVDVRVVRSSGARGTVRLPYRTVDGTARGGGV--HYEDAC-------GELEFGDDETMKTLQVKIVDDEEYEKKDNFFIELGQPQWLKRGISALLLNQGDGDRKLTAEEEEARRIAEMGKPVLGENCRLEVIIE-ESYDFKNTVDKLIKKTNLALVIGTHSWREQFLEAITVSAGDEEEEEDGSREERLPSCFDYVMHFLTVFWKVLFACVPPTEYCHGWACFGVSILVIGLLTALIGDLASHFGCTVGLKDSVNAVVFVALGTSIPDTFASKVAALQDQCADASIGNVTGSNAVNVFLGLGVAWSVAAVYWAVQGRPFEVRTGTLAFSVTLF 862 HSP 2 Score: 176.792 bits (447), Expect = 3.220e-45 Identity = 92/216 (42.59%), Postives = 135/216 (62.50%), Query Frame = 2
Query: 155 CFQSWLLVPGQLL--WK--------DWVQGCFYVCAILFLFVGIAIVADTFMLSIEMITSKKRIIYTYDRDKNERVEKEVFVWNETIANLTLMALGSSAPEILISVFETLATLSDTEPAESLGLYTIIGSAAYNMIVITAICVMSLPKNTSKRVNEFGVFIITSFWSIFAYLWLIFVIRWWTPNHIELWEAILTLLFFPALVISAWVQDKGCWLYK 772
C S+ PG LL W+ + Y A++++F+G++I+AD FM +IE+ITSK++ I T + E V +WNET++NLTLMALGSSAPEIL+SV E A LG TI+GSAA+NM V+ A+C+ +P S+++ VF +T+ WSIFAY+WL ++ ++P +++WEA+LTL+FFP V+ AW+ DK YK
Sbjct: 43 CQGSYRCQPGVLLPVWEPDDPSLGDKAARAVVYFVAMVYMFLGVSIIADRFMAAIEVITSKEKEI-TITKANGETSVGTVRIWNETVSNLTLMALGSSAPEILLSVIEVCG---HNFQAGELGPGTIVGSAAFNMFVVIAVCIYVIPAGESRKIKHLRVFFVTASWSIFAYVWLYLILAVFSPGVVQVWEALLTLVFFPVCVVFAWMADKRLLFYK 254 The following BLAST results are available for this feature:
BLAST of TCONS_00006167 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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