TCONS_00006165 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00006165
Unique Name	TCONS_00006165
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2665

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000063:530913..539615-
coding sequence from alignment at sc0000063:530913..539615-

transcript sequence

>TCONS_00006165 ID=TCONS_00006165|Name=TCONS_00006165|organism=Clytia hemisphaerica|type=transcript|length=2665bp
AAACAATGatggaattccaagaatttGACGAGACAAAAAAACGTTGGTGG
TGCTGGATTCCAAGGTGAATAAGTGTGAAAAGATATCTTTGAAGTTCAAC
GCATGCGCATTTGCACAAAGTAATGATGGAAAGAAATAGATACTACTCCG
CGACATTGTTAAACTGGGACGACGAATGACGAATAAAAGAAAGTCAAGAT
GGAAGTTCACGTCAAAGTCTTAATCCCCATCATCGTTCTATTGGCTCTAT
TGGTCATCACTGTAGTCGTCATCACATGTTATTTCTACATATGGCCTTAC
TGTGTCAAAAGGAAAAAGCAAAGTGCGCAATACTCCAAACTGACGGACCT
GCCTGATCTAACAATGGCAAAAGACAGGCGTAAGCGAAGAAAACCAAGAC
CGCCCACAATTATTCGCCCTTCAACTCCACCTCCAGTTCCTACAAAAACA
TCAGAGCAGTCGAGAAGGTATAAAACGAGTACAACAACACCGTATTATAA
TGAATCAATGAAACACCTGCCTGTTAAAGGGATTGGGACTACTCATAACC
AATTTAACTTCTTATCAACCTCTACAGACAAAAAACCCTTGTTAAGTCCT
GGCAGCAATAAGAAACCATTTTTAAGTCCTGGAGGTGTTGAATCAGAGTT
TGGAGATGATGAAATCTTCTACTTCGGTGATGAATCGACTTCGCCAAATC
CTCGAGAATTGAGTTTAATCTCTTCTTCATCCCAAACGAACAGCGACGAG
ACAAATAATAATTCATCTCGAATAACGAGGGAGACAAAAAATCGATTCCG
ACCCGAACCTATTCTGAACACCTATAGTAGTAACGAAGATCGATCAGGAA
TCGATTTATCGGTACCCGTTTATCGAGaacagaaatattcgaataaacgA
TCAAAATCAACGAGACAACCATTGACGAAACCAAAAGCACTTTCAGTTTT
ATCACCGGCCGATGGGAAAATCGAATTCACATTATTCTATAACGCCGATG
AGAAATTATTGACAATCAATTTAGTGCAATTAAAGGAGATTTTTCTTAAA
GCAGAAAGTTTTATTGGTATATTAAGCGTTTTCGATAAAGACCAGACTAA
AGAACGTAAGAAATCGAACACGGTACACCTAATACGTAGCACCGATAATA
CGTTACAACTAAGTGATTACGCAGATACGGGCTTCCTTATGTATCTAACG
TTATTGCGACCCGATATGAAATTTAGCAGGCATACATCCGTAGTTTTTGG
AAATGACTCTGCCATTTTTAACGAACGTTTTACAATACCGTGTCAAGATA
CTAACTTAAAGAAATCGTGTTTGTGTATACACGCACTTTGTAAGTTTGGC
CGTGATGGAGAACCAATTGTGCTGGGTGAAGTTACAGTGCCTTTGAAACG
TTTACAGAATTCTCAAGTTCTTCCTTTCTTGGCTGAACTACAATGTCCTG
CACAAGAAATCGAGCTCGAGCCTTATTTGAAACCAACAACAGAACTTGGT
AATTTGGAGATTTATCTTTCGTTTAACCCTATGGCATCAAAATTGGTTGT
CAAAATCATTCAAGCTTCATCGCTTCCCAAAATCGGAATGACTGGCCATC
CTAatgTTTCGGTGAAGACAGCATTGTATTACTGTAATACACGACTTGCC
AAGGAAACGACGTCTATCCAGAAACGACAACGTTCTCCTATATTCAACGA
AAtgtttgaatttaatttgagtAAAGATCGAATTTCAGAATGTGATGTTT
TATTTGAGATCCGCCATCATGGACCAATGTTTCGAACAGTAATAGGTTAC
GTCATTGTTGGTAATTCTGCCGGTGGCGAAGGTACAAAACAATGGAGACA
GTTGTTAGATTTTTCGTGTCATGAGAAACAGTACAAGATCATGCCGAAAA
AACCAGTCGGGTTAAGTTGATTATAACTTTGCTTTGTTAAGGGAGTGTAA
TAAGGAATGGATCCATAAAATTAACTTAAGGGCATAAGGGAActttaaat
ttaatttcaacGGGAAGTAATTTTAACGGtgtcgaaagaaaatttgaaaa
aaattatatttcgcAGGAATTAACTTTCACGCTTTTGCCTTATTTTGTAc
ccatttctttcatttttctattgatttttcgaattttttgatgaaaattg
gtcaaatttgcaATTCACTGGTTCTAATTTTCGtggttttgccaaaaaaa
ccgcgaaaaatagagaaaattagttcccgtgaAAATTAATCTCACACtac
aaagcaatttttttgcttaaacaGTATTTTCCGTATTATGTAAAAGGAGA
ATAATACATGAAACATCTTCGATTTTctactttaaatttttcttcttcaa
tttttttcccaccatttgtaattttattttttgctccCTTCAACGTCGAA
ATGAAGAAGGTAAGGTGCAAGATTCAATAATCTATGGTGAACGGAGATTG
TACATTGCAGCTTGCCAATGTGAATTTAAATGGTTTTGTGACCTTTATGC
TACAAAGagccaaaattggccaaaaaccttcatttccctagggattttta
gcaaaattagATCAATAACACTTAATTATGACCCTGCTCCCATTTTGCTG
ATTTTGATCAGGAGTACCCACCCCCCTGCTCTTTCCACCCCCTCCCctcc
tacaattaagcacac

Run BLAST on NCBI

protein sequence of TCONS_00006165-protein

>TCONS_00006165-protein ID=TCONS_00006165-protein|Name=TCONS_00006165-protein|organism=Clytia hemisphaerica|type=polypeptide|length=573bp
MEVHVKVLIPIIVLLALLVITVVVITCYFYIWPYCVKRKKQSAQYSKLTD
LPDLTMAKDRRKRRKPRPPTIIRPSTPPPVPTKTSEQSRRYKTSTTTPYY
NESMKHLPVKGIGTTHNQFNFLSTSTDKKPLLSPGSNKKPFLSPGGVESE
FGDDEIFYFGDESTSPNPRELSLISSSSQTNSDETNNNSSRITRETKNRF
RPEPILNTYSSNEDRSGIDLSVPVYREQKYSNKRSKSTRQPLTKPKALSV
LSPADGKIEFTLFYNADEKLLTINLVQLKEIFLKAESFIGILSVFDKDQT
KERKKSNTVHLIRSTDNTLQLSDYADTGFLMYLTLLRPDMKFSRHTSVVF
GNDSAIFNERFTIPCQDTNLKKSCLCIHALCKFGRDGEPIVLGEVTVPLK
RLQNSQVLPFLAELQCPAQEIELEPYLKPTTELGNLEIYLSFNPMASKLV
VKIIQASSLPKIGMTGHPNVSVKTALYYCNTRLAKETTSIQKRQRSPIFN
EMFEFNLSKDRISECDVLFEIRHHGPMFRTVIGYVIVGNSAGGEGTKQWR
QLLDFSCHEKQYKIMPKKPVGLS

Run BLAST on NCBI

transcript from alignment at sc0000063:530913..539615-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00006165 ID=TCONS_00006165|Name=TCONS_00006165|organism=Clytia hemisphaerica|type=transcript|length=8703bp|location=Sequence derived from alignment at sc0000063:530913..539615- (Clytia hemisphaerica)
AAACAATGATGGAATTCCAAGAATTTGACGAGACAAAAAAACGTTGGTGG
TGCTGGATTCCAAGGTGAATAAGTGTGAAAAGATATCTTTGAAGTTCAAC
GCATGCGCATTTGCACAAAGTAATGATGGGTAAGCTATAACTTTGTTTAT
TTTTTCAATGAGTAGGAAACTATGTATCAAATTTCTCTTTCATCATGTCT
CCATTTTCGTTTATTTTATCCATTCCAATTTTCTGTAAGCAAAACACTTT
ATAAGATTTTTCTATCAGATTCTTTATGATTTGTGACGTTGTCAGATACA
TGCCATGCGTTTTTTCGTGTTAATTTCCGCATTCAAATACCAATATTGAG
ATGTACCCAGCCATCTGGGTAAAATTCAGTTAAAAGTCTCGCTTTCAGCC
CTTACTGTGAAAAGTCTTTTGCATTTTTCACTTTCAGAGGTATTATACCT
TGTTTCAAATTAGTTCTTATAGTGGATATATGCTTTCTAGCATCGACACA
CTTAATAAACCCTACAATATACTAAAGGTTATTTTACGGCTGGATACAGT
TCATGCTTGATTCATTTGTGTAAACTTTTTGACGGTATTCAATATGTTTT
GATGTGTTCGGACTCGGTTAGAAAACTTTTGAAATTTTATTTTATTTTCA
TTTGTTTGTTTCGTGGTTAAAAGTTTGCTTTGTTTTTGTTTTCTTGGTCA
GCGTTTAGATATAGCAGACTAATATCAATAAGAATCATTTTGTAGTAAAA
AAACCTACCTGGTCCATTTTAAAAATATACTGAAAATTTTAGATATTTCC
TCCTTTTTCAAAATTTGAAAGTTCGGGTGTGTAAGTCGCTTTTGGAGTAA
CTATTCGAATATTTCAATTTGGGAGAGGTTATCGACTTGCAGGCTATATT
GTGACCCTCGTTAAACTATTTTTTGAACTTTTCGAGCATCTTCTACTCTT
CCACCCTAAATCAGAGCGCTTCCAAATGGTTTGTGGTTACAAGATTTCGT
GGCAATTTCCCTTTTTTTTTCAAATAGTACGACTATGGGGTGTTTCTGTA
GAAAAAATTACGTAATGGATAAAACAAATTTACAGTGAATAGGTTATAAA
CAGAAAAATTGACAGAAAACCCTTCAGGGAGTATTCACTGTGATGTCAAG
ATGAATGAAATCACAAAAACTCTACGCATTGACTTCTTATTAAAGCACCC
ACCCGTGTCTCAAGATAAAAGATACAACGGCCACCACCCATTAAGATTTG
TGAAAAAACCAATTAACGACTTTTTAAGTGGTAATTATGTTTAATTGACA
CTTTTATAGTAACGAATAATCATCCTTTTGTCCAAACCTGCTTGAAGTCT
CCATTCATAGATTTGTGTGGACTTGTTAATTAACTGAGATTTTTGACAAC
TTTTCTTCAGTCATTTTTTTCTGTGTCAACCTTTCTATGTTTTGGTTATG
CGTCAGTTTAATGTTTTCATTTTTGGTATTATGATTATTTTATTTTTGAT
TTATTTGAACTGGAGGTATTGTCTGAATCACTAAGNTTCAGTCATTTTTT
TCCGTGTCAACCTTTCTATGTTTTGGTTATGCGTCAGTTTAATGTTTTCA
TTTTTGGTATTATGATTATTTTATTTTTGATTTATTTGAACTGGAGGTAT
TGTCTGAATCACTAAGAAAGATTTAACATCATCCGAAGGCTTCAAAAATT
TTGGAACATATACATAGTCTGAAAAGCACAATTAGTGATCTATTTTTTTT
TTCATTCAGGGGTTTGTATCCTTTCCATTTTTTTTCTTAATTTTTATGAG
ATTTAAGCCTAAAAAAGTTCTTAAAATGTTCTTATTTTCACGATCTTGTG
GGTATTTTTGCCAATTTTGCTCCTAGGAAATCGAGTGTTTTAGAGTCCGC
AAAGCCTTAAAATATTCTTTGTTCTTAACTTTTTGGCCATCGAAGCCTTA
TGTTCTTATATAGTCTGTCCTTATAAAAAAAACTTGTACAGTATATATTT
TAACATTTCCAAAGTCTAAAGAGGTTTGACTAGCTACAATGTAATGAAAA
AGACCAGATCTTTCTGTGAAACCTGACGCTTTTGTTGATTTCCACAAACG
TGTTTTGGAATGTGAAGATTTCATCACAGTGCGTCACCGTAGTGGTGCTC
TTTAAGTGGCTTCTCATATAAAGTAAATAAGACCTTTACATCAAGTCTGC
TTTAATGACCAGTCAAGTTGTGTAAAAAGTTTATGACACCTTTTGGCTCC
ACTTACACATTCTCTACTTTACGGTTGTGGTGTACGCAAGCTGATTTATA
TACTGGTATACACAAGTGTCTCGTTTGACCCATTAATGGAGATACGGTGG
TTGTATACATTTGGGAAGTTTTAATGGAGACTTTAATCCAGCAACATATA
ACATATGCTTTGCTCTGCTCTAAAGAATTGCGGCGAAATGTGACGATCTG
ATCTGCTTTTTCAGCGGATTCATTAAAAATTGTGTTGCGTTTTACCTGGA
AATAAAAGCGAGAGCTACTGGCTTCTTCTCTAATGTTTATGATTGTCATT
TCATTTTGACATTGACTTTGATTGTATCCCTATTCGGAATTCAATGTAGA
AAATTAACCTCCAGAACCATCCCCACTGGATATTTCAGGTTAGGAACAAT
GGAACAATAGACCTTATATCCCCGTTGGGATTTCGATAGGGGCTTCGATG
GGTTTCACTGGGGCTGTGAGACAGGGGTGTTTTAGTGTCAATTAGAGTAA
AGCTTAGTCTCCTTTTGGATATGACATTGCTAAAAGAAGGAAATTGGAGA
TATCTGATCGACATAAAAAGTTTTCACAAATAGTTTTAAGTTGTTCATCA
TTATCAGTCTCCACTCGAAATGTTTGTTAAGGTGGGCCTATCGTTTTGAC
AGCTTTCTAAACATACTTCTACCCAGTCTTTCTGATTGAGTAACTACTGT
AGACACACAATATTTATTGAAATACAAACATTATCGTTAAAGTTTTTTTT
ACTCTTAAAGTTGCATAAAAAATTTGGCGAGCTTTGGTATGGCTCTTGAC
ATTGTAAGGGTCAAAATTCAAAGAGTCGGTTTTTTGTTAAATTTAACTTT
GATATTTCTGAGAAACTTACCGTAAGTTGGTCTAATATCGACATCCCTCT
TCTAATTTCGACACCCTTCTTTAGAAATAGGAATAATGGGAAGGTCGGAA
TCAGTGATTGAAACCCATTTTCTTTGCTTAGCGATCTGAAAGTAATAAGT
CTTTAGCCTATCAGTGATTCCGACCTTCCTATTATTCCCATCTCTAAAGA
AGGGTGTCGAAATTAGAAGAGGGATGTCGATATTCGACCAACCTACGGTA
GTTATTACATTTTCTTCTTTAACAATCCCAATTTTGTAGCTTTATGTAGC
TGCCGTAAAATTTGAATGTCTGGAGTTTCCAAAGCCCGTTGAAAGGCTAC
TCAAGGGAATGGAGTGGAGTGTATAACTCAAGGGTGCTCTTAAGTTGTTA
TTCAACGATGTCCTCTAACACATTGGTCATTTTCCTTTCAGAAAGAAATA
GATACTACTCCGCGACATTGTTAAACTGGGACGACGAATGACGAATAAAA
GAAAGTCAAGATGGAAGTTCACGTCAAAGGTTTGTCCTTTATATTAACCC
GTGAGATCCGATTGAATTAATAAACATGTAAAATAAACCAATATATCATT
GCACAAACTCAAGTCGGCTCGTACTCTGAAAGATCTTAAGCCAGTAGACA
CCCATGTGTCAAAGACCCGCTGGGACCGCAGCCCCGCTGGATAATTGCCA
AAAATGTCGTCATTTCGGCCATAATCACTTGTATTGAATTGATTTGAAAG
GTCTTAAATCAGTGCATATAGTCTGTTGGCCGGTCAGTATAAAATGCTCT
GGTTTAAGAAGTTTATTTTTATCAGCATTTTCCTTGTTAATGATATAAGA
TAACATCAAGTTGCTCAGATTTTGAACGCGTTACCGAATAAGTAATTTTC
TTGGGACTGGTTCAACATTTGAAAACATGATCAAAATGATCAAATTAACC
AATACTGTACCTCAACGCTGAAATACTTCTCTGGGGACTTATTCAAAATT
TAAGAATATGATCAAAGTTTACTAAATAACCGATATCTCATCACTCAAGT
TAAAGTTAAGTGATAATTAAGTAAGTGTGTTTTCTTTACTGACTATGATC
AAAATTTGAGGAATTGGGGAGGTAATTCTCTAAAGTTAGTATTTTACCGC
CGCCTATAAAAAAACAAATCGAGCACGAAAAGTATTTAGTAGTTTTTCTT
CTTTTTGCTAAAAATTAATTTTAGTGTAAAAAAAGGTTGCCAAAGTTTTT
CAGTGTTGGCAGTTTGTAACTTTAAGACAGAAGACAGGCAACACATTGTT
ACTTAAACCTTTTACCTTCTTCTTGTTTCAGTCTTAATCCCCATCATCGT
TCTATTGGCTCTATTGGTCATCACTGTAGTCGTCATCACATGTTATTTCT
ACATATGGCCTTACTGTGTCAAAAGGAAAAAGCAAAGTGCGCAATACTCC
AAACTGACGGACCTGCCTGATCTAACAATGGCAAAAGACAGGCGTAAGCG
AAGAAAACCAAGACCGCCCACAATTATTCGCCCTTCAACTCCACCTCCAG
TTCCTACAAAAACATCAGAGCAGTCGAGAAGGTATAAAACGAGTACAACA
ACACCGTATTATAATGAATCAATGAAACACCTGCCTGTTAAAGGGATTGG
GACTACTCATAACCAATTTAACTTCTTATCAACCTCTACAGACAAAAAAC
CCTTGTTAAGTCCTGGCAGCAATAAGAAACCATTTTTAAGTCCTGGAGGT
GTTGAATCAGAGTTTGGAGATGATGAAATCTTCTACTTCGGTGATGAATC
GACTTCGCCAAATCCTCGAGAATTGAGTTTAATCTCTTCTTCATCCCAAA
CGAACAGCGACGAGACAAATAATAATTCATCTCGAATAACGAGGGAGACA
AAAAATCGATTCCGACCCGAACCTATTCTGAACACCTATAGTAGTAACGA
AGATCGATCAGGAATCGATTTATCGGTACCCGTTTATCGAGAACAGAAAT
ATTCGAATAAACGATCAAAATCAACGAGACAACCATTGACGAAACCAAAA
GCACTTTCAGTTTTATCACCGGCCGATGGGAAAATCGAATTCACATTATT
CTATAACGCCGATGAGAAATTATTGACAATCAATTTAGTGCAATTAAAGG
AGATTTTTCTTAAAGCAGAAAGTTTTATTGGTATATTAAGCGTTTTCGAT
AAAGACCAGACTAAAGAACGTAAGAAATCGAACACGGTACACCTAATACG
TAGCACCGATAATACGTTACAACTAAGTGATTACGCAGATACGGGCTTCC
TTATGTATCTAACGTTATTGCGACCCGATATGAAATTTAGCAGGCATACA
TCCGTAGTTTTTGGAAATGACTCTGCCATTTTTAACGAACGTTTTACAAT
ACCGTGTCAAGATACTAACTTAAAGAAATCGTGTTTGTGTATACACGCAC
TTTGTAAGTTTGGCCGTGATGGAGAACCAATTGTGCTGGGTGAAGTTACA
GTGCCTTTGAAACGTTTACAGAATTCTCAAGTTCTTCCTTTCTTGGCTGA
ACTACAATGTCCTGCACAAGAAATCGAGCTCGAGGTATGTTGTAACATAG
TTTGCAGCCCCTTTTTTAATTAGGAGATTTGGGGGTCCTTTGTAGGGGGA
GTACCAAGATTTGCCTTAAAAATTGGGGGCAGAGAATTCAGGGGCAAGTA
AATAAGAAAGGCGGTTGGAAATTTTGGTCAACTTTCTGATCGTTTTGGTG
GTGCATAGAACGCGAGTTTCCTTCGAAATTTAATTTTCTGTAAAAAAAGG
GGGATAAAATTTTACCTCTCTGCAAACTATGAATGAATACATATTTGGCT
ATGGATACACCACGAAGATATAGAAGAAGGTTAGAAATTGAATCTCCAAT
GTAGTTAAAGTCTTATTTCCTTCGAAAGTTTTAGCCTTCGGCATACAATA
AATCCTCTCTCTAATACGTTACGAGCCTTTATTATTTGAGTCTTTCTGTA
ATTCGAACCTAAAAACCTATATTAGATTACCTTTTATAGAGGTCTGTTCT
CCAGGCTACTGAAAATCCATATAAAAATACTCTCTGCAATCTGAATACCT
CTATAATTATTTTTATCTTTATAATACGAAAAAATTTTTCGAGTCCCTTG
AAGATCGAATTTTGGAAAGTCAACTAAGCATTATTGTATACACTATTACG
GCGTTTACGAACATTTCAATTCTAACTTTCAGCTTTTGGGGCCTTTAGAG
GTGGGGTTTCATGGTTGGCGGAGGAGCGGAATCGGCCCTTTTTTCGGACG
GAGTGGCGGAATTCGGCGAAAATTTAGACGGAATTACGGAAATTGGGTTC
TCTGACGGAGACGGAAAATTAGACAATTTTAGTGTGGAAAAACGGAATTT
AGCAAAAAAATTAGCGGAATTTCGGAATTGGTAAAAGAAATTCAAAATTT
GCGGAATTTTCGACAAAAATATTGAATTTCAAAGGAATTTTCGGTGACGG
AATCTTGGTTCAATTTAAGACGGTTTGACGGAAATTGGCGAAAAAATGGT
GGAATTGCGAAATTGGGTACCCCNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAACTGATCTGCTTTATT
TTAGCCTTATTTGAAACCAACAACAGAACTTGGTAATTTGGAGATTTATC
TTTCGTTTAACCCTATGGCATCAAAATTGGTTGTCAAAATCATTCAAGCT
TCATCGCTTCCCAAAATCGGAATGACTGGCCATCCTAGTAAGTTTCTCTT
TCTAGTCCTAGGCCTAATTTAGACGGCCGGCTTTCCTCTGTTCGAATTGA
GAGACGGCAGAAAGTTGCGTAATTTGATGCACCTTGCTTTGACTTTTCGT
CTAAATCTTTGAAAATGCACACCATGTATGTGCACAATATTCAATTAGGA
AATGTTTTGGGACTCAAGAATTTGTTAAATTAAATAAAACAAAGTAACAC
TCTTTTTTTCAGGGCCGGCTTTTCTATTATTTTTTGGCACTTTGAAACTT
AAATTGTTTTTATCCTATTTTATTTCTAGGAAATACTTGAGACTTTAGGT
CTACTAATTTGACCCTTATTTTGCATAAAATTCAGCCATTCAAGCCTCAG
CATTGTTATAAATTGTTCTTATTGGCATTTTTTGAGCCTTATTGTTCATT
TAAAAAAAAATCTAACTTTTCTCTAATTGTTTGATTTTCAGATGTTTCGG
TGAAGACAGCATTGTATTACTGTAATACACGACTTGCCAAGGAAACGACG
TCTATCCAGAAACGACAACGTTCTCCTATATTCAACGAAATGTTTGAATT
TAATTTGAGTAAAGATCGAATTTCAGAATGTGATGTTTTATTTGAGATCC
GCCATCATGGACCAATGTTTCGAACAGTAATAGGTTACGTCATTGTTGGT
AATTCTGCCGGTGGCGAAGGTACAAAACAATGGAGACAGTTGTTAGATTT
TTCGTGTCATGAGAAACAGTACAAGATCATGCCGAAAAAACCAGTCGGGT
TAAGTTGATTATAACTTTGCTTTGTTAAGGGAGTGTAATAAGGAATGGAT
CCATAAAATTAACTTAAGGGCATAAGGGAACTTTAAATTTAATTTCAACG
GGAAGTAATTTTAACGGTGTCGAAAGAAAATTTGAAAAAAATTATATTTC
GCAGGAATTAACTTTCACGCTTTTGCCTTATTTTGTACCCATTTCTTTCA
TTTTTCTATTGATTTTTCGAATTTTTTGATGAAAATTGGTCAAATTTGCA
ATTCACTGGTTCTAATTTTCGTGGTTTTGCCAAAAAAACCGCGAAAAATA
GAGAAAATTAGTTCCCGTGAAAATTAATCTCACACTACAAAGCAATTTTT
TTGCTTAAACAGTATTTTCCGTATTATGTAAAAGGAGAATAATACATGAA
ACATCTTCGATTTTCTACTTTAAATTTTTCTTCTTCAATTTTTTTCCCAC
CATTTGTAATTTTATTTTTTGCTCCCTTCAACGTCGAAATGAAGAAGGTA
AGGTGCAAGATTCAATAATCTATGGTGAACGGAGATTGTACATTGCAGCT
TGCCAATGTGAATTTAAATGGTTTTGTGACCTTTATGCTACAAAGAGCCA
AAATTGGCCAAAAACCTTCATTTCCCTAGGGATTTTTAGCAAAATTAGAT
CAATAACACTTAATTATGACCCTGCTCCCATTTTGCTGATTTTGATCAGG
AGTACCCACCCCCCTGCTCTTTCCACCCCCTCCCCTCCTACAATTAAGCA
CAC

Coding sequence (CDS) from alignment at sc0000063:530913..539615-

>TCONS_00006165 ID=TCONS_00006165|Name=TCONS_00006165|organism=Clytia hemisphaerica|type=CDS|length=6888bp|location=Sequence derived from alignment at sc0000063:530913..539615- (Clytia hemisphaerica)
ATGTTTCGGTGAAGACAGCATTGTATTACTGTAATACACGACTTGCCAAG
GAAACGACGTCTATCCAGAAACGACAACGTTCTCCTATATTCAACGAAAT
GTTTGAATTTAATTTGAGTAAAGATCGAATTTCAGAATGTGATGTTTTAT
TTGAGATCCGCCATCATGGACCAATGTTTCGAACAGTAATAGGTTACGTC
ATTGTTGGTAATTCTGCCGGTGGCGAAGGTACAAAACAATGGAGACAGTT
GTTAGATTTTTCGTGTCATGAGAAACAGTACAAGATCATGCCGAAAAAAC
CAGTCGGGTTAAGTTGACCTTATTTGAAACCAACAACAGAACTTGGTAAT
TTGGAGATTTATCTTTCGTTTAACCCTATGGCATCAAAATTGGTTGTCAA
AATCATTCAAGCTTCATCGCTTCCCAAAATCGGAATGACTGGCCATCCTA
TCTTAATCCCCATCATCGTTCTATTGGCTCTATTGGTCATCACTGTAGTC
GTCATCACATGTTATTTCTACATATGGCCTTACTGTGTCAAAAGGAAAAA
GCAAAGTGCGCAATACTCCAAACTGACGGACCTGCCTGATCTAACAATGG
CAAAAGACAGGCGTAAGCGAAGAAAACCAAGACCGCCCACAATTATTCGC
CCTTCAACTCCACCTCCAGTTCCTACAAAAACATCAGAGCAGTCGAGAAG
GTATAAAACGAGTACAACAACACCGTATTATAATGAATCAATGAAACACC
TGCCTGTTAAAGGGATTGGGACTACTCATAACCAATTTAACTTCTTATCA
ACCTCTACAGACAAAAAACCCTTGTTAAGTCCTGGCAGCAATAAGAAACC
ATTTTTAAGTCCTGGAGGTGTTGAATCAGAGTTTGGAGATGATGAAATCT
TCTACTTCGGTGATGAATCGACTTCGCCAAATCCTCGAGAATTGAGTTTA
ATCTCTTCTTCATCCCAAACGAACAGCGACGAGACAAATAATAATTCATC
TCGAATAACGAGGGAGACAAAAAATCGATTCCGACCCGAACCTATTCTGA
ACACCTATAGTAGTAACGAAGATCGATCAGGAATCGATTTATCGGTACCC
GTTTATCGAGAACAGAAATATTCGAATAAACGATCAAAATCAACGAGACA
ACCATTGACGAAACCAAAAGCACTTTCAGTTTTATCACCGGCCGATGGGA
AAATCGAATTCACATTATTCTATAACGCCGATGAGAAATTATTGACAATC
AATTTAGTGCAATTAAAGGAGATTTTTCTTAAAGCAGAAAGTTTTATTGG
TATATTAAGCGTTTTCGATAAAGACCAGACTAAAGAACGTAAGAAATCGA
ACACGGTACACCTAATACGTAGCACCGATAATACGTTACAACTAAGTGAT
TACGCAGATACGGGCTTCCTTATGTATCTAACGTTATTGCGACCCGATAT
GAAATTTAGCAGGCATACATCCGTAGTTTTTGGAAATGACTCTGCCATTT
TTAACGAACGTTTTACAATACCGTGTCAAGATACTAACTTAAAGAAATCG
TGTTTGTGTATACACGCACTTTGTAAGTTTGGCCGTGATGGAGAACCAAT
TGTGCTGGGTGAAGTTACAGTGCCTTTGAAACGTTTACAGAATTCTCAAG
TTCTTCCTTTCTTGGCTGAACTACAATGTCCTGCACAAGAAATCGAGCTC
GAGATGGAAGTTCACGTCAAAGATGTTTCGGTGAAGACAGCATTGTATTA
CTGTAATACACGACTTGCCAAGGAAACGACGTCTATCCAGAAACGACAAC
GTTCTCCTATATTCAACGAAATGTTTGAATTTAATTTGAGTAAAGATCGA
ATTTCAGAATGTGATGTTTTATTTGAGATCCGCCATCATGGACCAATGTT
TCGAACAGTAATAGGTTACGTCATTGTTGGTAATTCTGCCGGTGGCGAAG
GTACAAAACAATGGAGACAGTTGTTAGATTTTTCGTGTCATGAGAAACAG
TACAAGATCATGCCGAAAAAACCAGTCGGGTTAAGTTGACCTTATTTGAA
ACCAACAACAGAACTTGGTAATTTGGAGATTTATCTTTCGTTTAACCCTA
TGGCATCAAAATTGGTTGTCAAAATCATTCAAGCTTCATCGCTTCCCAAA
ATCGGAATGACTGGCCATCCTATCTTAATCCCCATCATCGTTCTATTGGC
TCTATTGGTCATCACTGTAGTCGTCATCACATGTTATTTCTACATATGGC
CTTACTGTGTCAAAAGGAAAAAGCAAAGTGCGCAATACTCCAAACTGACG
GACCTGCCTGATCTAACAATGGCAAAAGACAGGCGTAAGCGAAGAAAACC
AAGACCGCCCACAATTATTCGCCCTTCAACTCCACCTCCAGTTCCTACAA
AAACATCAGAGCAGTCGAGAAGGTATAAAACGAGTACAACAACACCGTAT
TATAATGAATCAATGAAACACCTGCCTGTTAAAGGGATTGGGACTACTCA
TAACCAATTTAACTTCTTATCAACCTCTACAGACAAAAAACCCTTGTTAA
GTCCTGGCAGCAATAAGAAACCATTTTTAAGTCCTGGAGGTGTTGAATCA
GAGTTTGGAGATGATGAAATCTTCTACTTCGGTGATGAATCGACTTCGCC
AAATCCTCGAGAATTGAGTTTAATCTCTTCTTCATCCCAAACGAACAGCG
ACGAGACAAATAATAATTCATCTCGAATAACGAGGGAGACAAAAAATCGA
TTCCGACCCGAACCTATTCTGAACACCTATAGTAGTAACGAAGATCGATC
AGGAATCGATTTATCGGTACCCGTTTATCGAGAACAGAAATATTCGAATA
AACGATCAAAATCAACGAGACAACCATTGACGAAACCAAAAGCACTTTCA
GTTTTATCACCGGCCGATGGGAAAATCGAATTCACATTATTCTATAACGC
CGATGAGAAATTATTGACAATCAATTTAGTGCAATTAAAGGAGATTTTTC
TTAAAGCAGAAAGTTTTATTGGTATATTAAGCGTTTTCGATAAAGACCAG
ACTAAAGAACGTAAGAAATCGAACACGGTACACCTAATACGTAGCACCGA
TAATACGTTACAACTAAGTGATTACGCAGATACGGGCTTCCTTATGTATC
TAACGTTATTGCGACCCGATATGAAATTTAGCAGGCATACATCCGTAGTT
TTTGGAAATGACTCTGCCATTTTTAACGAACGTTTTACAATACCGTGTCA
AGATACTAACTTAAAGAAATCGTGTTTGTGTATACACGCACTTTGTAAGT
TTGGCCGTGATGGAGAACCAATTGTGCTGGGTGAAGTTACAGTGCCTTTG
AAACGTTTACAGAATTCTCAAGTTCTTCCTTTCTTGGCTGAACTACAATG
TCCTGCACAAGAAATCGAGCTCGAGATGGAAGTTCACGTCAAAGATGTTT
CGGTGAAGACAGCATTGTATTACTGTAATACACGACTTGCCAAGGAAACG
ACGTCTATCCAGAAACGACAACGTTCTCCTATATTCAACGAAATGTTTGA
ATTTAATTTGAGTAAAGATCGAATTTCAGAATGTGATGTTTTATTTGAGA
TCCGCCATCATGGACCAATGTTTCGAACAGTAATAGGTTACGTCATTGTT
GGTAATTCTGCCGGTGGCGAAGGTACAAAACAATGGAGACAGTTGTTAGA
TTTTTCGTGTCATGAGAAACAGTACAAGATCATGCCGAAAAAACCAGTCG
GGTTAAGTTGACCTTATTTGAAACCAACAACAGAACTTGGTAATTTGGAG
ATTTATCTTTCGTTTAACCCTATGGCATCAAAATTGGTTGTCAAAATCAT
TCAAGCTTCATCGCTTCCCAAAATCGGAATGACTGGCCATCCTATCTTAA
TCCCCATCATCGTTCTATTGGCTCTATTGGTCATCACTGTAGTCGTCATC
ACATGTTATTTCTACATATGGCCTTACTGTGTCAAAAGGAAAAAGCAAAG
TGCGCAATACTCCAAACTGACGGACCTGCCTGATCTAACAATGGCAAAAG
ACAGGCGTAAGCGAAGAAAACCAAGACCGCCCACAATTATTCGCCCTTCA
ACTCCACCTCCAGTTCCTACAAAAACATCAGAGCAGTCGAGAAGGTATAA
AACGAGTACAACAACACCGTATTATAATGAATCAATGAAACACCTGCCTG
TTAAAGGGATTGGGACTACTCATAACCAATTTAACTTCTTATCAACCTCT
ACAGACAAAAAACCCTTGTTAAGTCCTGGCAGCAATAAGAAACCATTTTT
AAGTCCTGGAGGTGTTGAATCAGAGTTTGGAGATGATGAAATCTTCTACT
TCGGTGATGAATCGACTTCGCCAAATCCTCGAGAATTGAGTTTAATCTCT
TCTTCATCCCAAACGAACAGCGACGAGACAAATAATAATTCATCTCGAAT
AACGAGGGAGACAAAAAATCGATTCCGACCCGAACCTATTCTGAACACCT
ATAGTAGTAACGAAGATCGATCAGGAATCGATTTATCGGTACCCGTTTAT
CGAGAACAGAAATATTCGAATAAACGATCAAAATCAACGAGACAACCATT
GACGAAACCAAAAGCACTTTCAGTTTTATCACCGGCCGATGGGAAAATCG
AATTCACATTATTCTATAACGCCGATGAGAAATTATTGACAATCAATTTA
GTGCAATTAAAGGAGATTTTTCTTAAAGCAGAAAGTTTTATTGGTATATT
AAGCGTTTTCGATAAAGACCAGACTAAAGAACGTAAGAAATCGAACACGG
TACACCTAATACGTAGCACCGATAATACGTTACAACTAAGTGATTACGCA
GATACGGGCTTCCTTATGTATCTAACGTTATTGCGACCCGATATGAAATT
TAGCAGGCATACATCCGTAGTTTTTGGAAATGACTCTGCCATTTTTAACG
AACGTTTTACAATACCGTGTCAAGATACTAACTTAAAGAAATCGTGTTTG
TGTATACACGCACTTTGTAAGTTTGGCCGTGATGGAGAACCAATTGTGCT
GGGTGAAGTTACAGTGCCTTTGAAACGTTTACAGAATTCTCAAGTTCTTC
CTTTCTTGGCTGAACTACAATGTCCTGCACAAGAAATCGAGCTCGAGATG
GAAGTTCACGTCAAAGATGTTTCGGTGAAGACAGCATTGTATTACTGTAA
TACACGACTTGCCAAGGAAACGACGTCTATCCAGAAACGACAACGTTCTC
CTATATTCAACGAAATGTTTGAATTTAATTTGAGTAAAGATCGAATTTCA
GAATGTGATGTTTTATTTGAGATCCGCCATCATGGACCAATGTTTCGAAC
AGTAATAGGTTACGTCATTGTTGGTAATTCTGCCGGTGGCGAAGGTACAA
AACAATGGAGACAGTTGTTAGATTTTTCGTGTCATGAGAAACAGTACAAG
ATCATGCCGAAAAAACCAGTCGGGTTAAGTTGACCTTATTTGAAACCAAC
AACAGAACTTGGTAATTTGGAGATTTATCTTTCGTTTAACCCTATGGCAT
CAAAATTGGTTGTCAAAATCATTCAAGCTTCATCGCTTCCCAAAATCGGA
ATGACTGGCCATCCTATCTTAATCCCCATCATCGTTCTATTGGCTCTATT
GGTCATCACTGTAGTCGTCATCACATGTTATTTCTACATATGGCCTTACT
GTGTCAAAAGGAAAAAGCAAAGTGCGCAATACTCCAAACTGACGGACCTG
CCTGATCTAACAATGGCAAAAGACAGGCGTAAGCGAAGAAAACCAAGACC
GCCCACAATTATTCGCCCTTCAACTCCACCTCCAGTTCCTACAAAAACAT
CAGAGCAGTCGAGAAGGTATAAAACGAGTACAACAACACCGTATTATAAT
GAATCAATGAAACACCTGCCTGTTAAAGGGATTGGGACTACTCATAACCA
ATTTAACTTCTTATCAACCTCTACAGACAAAAAACCCTTGTTAAGTCCTG
GCAGCAATAAGAAACCATTTTTAAGTCCTGGAGGTGTTGAATCAGAGTTT
GGAGATGATGAAATCTTCTACTTCGGTGATGAATCGACTTCGCCAAATCC
TCGAGAATTGAGTTTAATCTCTTCTTCATCCCAAACGAACAGCGACGAGA
CAAATAATAATTCATCTCGAATAACGAGGGAGACAAAAAATCGATTCCGA
CCCGAACCTATTCTGAACACCTATAGTAGTAACGAAGATCGATCAGGAAT
CGATTTATCGGTACCCGTTTATCGAGAACAGAAATATTCGAATAAACGAT
CAAAATCAACGAGACAACCATTGACGAAACCAAAAGCACTTTCAGTTTTA
TCACCGGCCGATGGGAAAATCGAATTCACATTATTCTATAACGCCGATGA
GAAATTATTGACAATCAATTTAGTGCAATTAAAGGAGATTTTTCTTAAAG
CAGAAAGTTTTATTGGTATATTAAGCGTTTTCGATAAAGACCAGACTAAA
GAACGTAAGAAATCGAACACGGTACACCTAATACGTAGCACCGATAATAC
GTTACAACTAAGTGATTACGCAGATACGGGCTTCCTTATGTATCTAACGT
TATTGCGACCCGATATGAAATTTAGCAGGCATACATCCGTAGTTTTTGGA
AATGACTCTGCCATTTTTAACGAACGTTTTACAATACCGTGTCAAGATAC
TAACTTAAAGAAATCGTGTTTGTGTATACACGCACTTTGTAAGTTTGGCC
GTGATGGAGAACCAATTGTGCTGGGTGAAGTTACAGTGCCTTTGAAACGT
TTACAGAATTCTCAAGTTCTTCCTTTCTTGGCTGAACTACAATGTCCTGC
ACAAGAAATCGAGCTCGAGATGGAAGTTCACGTCAAAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_003514	XLOC_003514	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00006165-protein	TCONS_00006165-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000063	supercontig	sc0000063:530913..539615 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.04177	2.18964	2.03391	3.48226	3.6337	2.39283	2.88685	2.70263	0.756871	0.468754	0	0.897265	1.49336	0.620349	1.02002	1.3683	1.34851	1.03663	0.477388	0.499552	0	0.635364	4.1193	2.80878	0.964326	4.73351	0	0	6.9783	6.60194

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR000008	C2_dom

Blast

[Close]

BLAST of TCONS_00006165 vs. Swiss-Prot (Human)
Match: SYT7 (Synaptotagmin-7 OS=Homo sapiens GN=SYT7 PE=1 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 4.617e-18
Identity = 77/302 (25.50%), Postives = 134/302 (44.37%), Query Frame = 1

Query:  964 GKIEFTLFYNADEKLLTINLVQLKEIFLKAESFIGILSVFDKDQTKERKKSNTVHLIRSTDNTLQLSDYADTGFLMYLTLLRPDMKFSRHTSVVFGNDSAIFNERFTI---PCQDTNLKKSCLCIHALCKFGRDGEPIVLGEVTVPLKRLQNSQVLPFLAELQCPAQEIELEPYLKPTTELGNLEIYLSFNPMASKLVVKIIQASSLPKIGMTGHPNVSVKTALYYCNTRLAKETTSIQKRQRSPIFNEMFEFNLSKDRISECDVLFEIRHHGPMFRT-VIGYVIVGNSAGGEGTKQWRQLL 1857
            G+I+F++ YN  E  LT+ +++ +E  L A+ F G    F K                                 +YL    PD K    T V   N +  +NE F     P +    +   L +    +F R+ +PI  GEV++PL ++  +Q+  F  +L+         P    +   G L + L +NP A+ ++V II+A +L  + + G  +  VK  L Y + R+ K+ T   KR  +PIFNE F F++  +++ E  ++  +     + R  VIG + +   +G    K W+ ++
Sbjct:  137 GRIQFSVGYNFQESTLTVKIMKAQE--LPAKDFSGTSDPFVK---------------------------------IYLL---PDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRN-DPI--GEVSIPLNKVDLTQMQTFWKDLK---------PCSDGSGSRGELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTMKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKDMI 388

The following BLAST results are available for this feature:

BLAST of TCONS_00006165 vs. Swiss-Prot (Human)

BLAST of TCONS_00006165 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SYT7	4.617e-18	25.50	Synaptotagmin-7 OS=Homo sapiens GN=SYT7 PE=1 SV=3	[more]

You are here

TCONS_00006165 (transcript) - C. hemisphaerica