TCONS_00006164 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006164
Unique NameTCONS_00006164
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2586

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006164 ID=TCONS_00006164|Name=TCONS_00006164|organism=Clytia hemisphaerica|type=transcript|length=2586bp
CCACCACCCATTAAGATTTGTGAAAAAACCAATTAACGACTTTTTAAGTG
AAAGAAATAGATACTACTCCGCGACATTGTTAAACTGGGACGACGAATGA
CGAATAAAAGAAAGTCAAGATGGAAGTTCACGTCAAAGTCTTAATCCCCA
TCATCGTTCTATTGGCTCTATTGGTCATCACTGTAGTCGTCATCACATGT
TATTTCTACATATGGCCTTACTGTGTCAAAAGGAAAAAGCAAAGTGCGCA
ATACTCCAAACTGACGGACCTGCCTGATCTAACAATGGCAAAAGACAGGC
GTAAGCGAAGAAAACCAAGACCGCCCACAATTATTCGCCCTTCAACTCCA
CCTCCAGTTCCTACAAAAACATCAGAGCAGTCGAGAAGGTATAAAACGAG
TACAACAACACCGTATTATAATGAATCAATGAAACACCTGCCTGTTAAAG
GGATTGGGACTACTCATAACCAATTTAACTTCTTATCAACCTCTACAGAC
AAAAAACCCTTGTTAAGTCCTGGCAGCAATAAGAAACCATTTTTAAGTCC
TGGAGGTGTTGAATCAGAGTTTGGAGATGATGAAATCTTCTACTTCGGTG
ATGAATCGACTTCGCCAAATCCTCGAGAATTGAGTTTAATCTCTTCTTCA
TCCCAAACGAACAGCGACGAGACAAATAATAATTCATCTCGAATAACGAG
GGAGACAAAAAATCGATTCCGACCCGAACCTATTCTGAACACCTATAGTA
GTAACGAAGATCGATCAGGAATCGATTTATCGGTACCCGTTTATCGAGaa
cagaaatattcgaataaacgATCAAAATCAACGAGACAACCATTGACGAA
ACCAAAAGCACTTTCAGTTTTATCACCGGCCGATGGGAAAATCGAATTCA
CATTATTCTATAACGCCGATGAGAAATTATTGACAATCAATTTAGTGCAA
TTAAAGGAGATTTTTCTTAAAGCAGAAAGTTTTATTGGTATATTAAGCGT
TTTCGATAAAGACCAGACTAAAGAACGTAAGAAATCGAACACGGTACACC
TAATACGTAGCACCGATAATACGTTACAACTAAGTGATTACGCAGATACG
GGCTTCCTTATGTATCTAACGTTATTGCGACCCGATATGAAATTTAGCAG
GCATACATCCGTAGTTTTTGGAAATGACTCTGCCATTTTTAACGAACGTT
TTACAATACCGTGTCAAGATACTAACTTAAAGAAATCGTGTTTGTGTATA
CACGCACTTTGTAAGTTTGGCCGTGATGGAGAACCAATTGTGCTGGGTGA
AGTTACAGTGCCTTTGAAACGTTTACAGAATTCTCAAGTTCTTCCTTTCT
TGGCTGAACTACAATGTCCTGCACAAGAAATCGAGCTCGAGCCTTATTTG
AAACCAACAACAGAACTTGGTAATTTGGAGATTTATCTTTCGTTTAACCC
TATGGCATCAAAATTGGTTGTCAAAATCATTCAAGCTTCATCGCTTCCCA
AAATCGGAATGACTGGCCATCCTAatgTTTCGGTGAAGACAGCATTGTAT
TACTGTAATACACGACTTGCCAAGGAAACGACGTCTATCCAGAAACGACA
ACGTTCTCCTATATTCAACGAAAtgtttgaatttaatttgagtAAAGATC
GAATTTCAGAATGTGATGTTTTATTTGAGATCCGCCATCATGGACCAATG
TTTCGAACAGTAATAGGTTACGTCATTGTTGGTAATTCTGCCGGTGGCGA
AGGTACAAAACAATGGAGACAGTTGTTAGATTTTTCGTGTCATGAGAAAC
AGTACAAGATCATGCCGAAAAAACCAGTCGGGTTAAGTTGATTATAACTT
TGCTTTGTTAAGGGAGTGTAATAAGGAATGGATCCATAAAATTAACTTAA
GGGCATAAGGGAActttaaatttaatttcaacGGGAAGTAATTTTAACGG
tgtcgaaagaaaatttgaaaaaaattatatttcgcAGGAATTAACTTTCA
CGCTTTTGCCTTATTTTGTAcccatttctttcatttttctattgattttt
cgaattttttgatgaaaattggtcaaatttgcaATTCACTGGTTCTAATT
TTCGtggttttgccaaaaaaaccgcgaaaaatagagaaaattagttcccg
tgaAAATTAATCTCACACtacaaagcaatttttttgcttaaacaGTATTT
TCCGTATTATGTAAAAGGAGAATAATACATGAAACATCTTCGATTTTcta
ctttaaatttttcttcttcaatttttttcccaccatttgtaattttattt
tttgctccCTTCAACGTCGAAATGAAGAAGGTAAGGTGCAAGATTCAATA
ATCTATGGTGAACGGAGATTGTACATTGCAGCTTGCCAATGTGAATTTAA
ATGGTTTTGTGACCTTTATGCTACAAAGagccaaaattggccaaaaacct
tcatttccctagggatttttagcaaaattagATCAATAACACTTAATTAT
GACCCTGCTCCCATTTTGCTGATTTTGATCAGGAGTACCCACCCCCCTGC
TCTTTCCACCCCCTCCCctcctacaattaagcacac
Run BLAST on NCBI

transcript from alignment at sc0000063:530913..538385-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006164 ID=TCONS_00006164|Name=TCONS_00006164|organism=Clytia hemisphaerica|type=transcript|length=7473bp|location=Sequence derived from alignment at sc0000063:530913..538385- (Clytia hemisphaerica)
CCACCACCCATTAAGATTTGTGAAAAAACCAATTAACGACTTTTTAAGTG
GTAATTATGTTTAATTGACACTTTTATAGTAACGAATAATCATCCTTTTG
TCCAAACCTGCTTGAAGTCTCCATTCATAGATTTGTGTGGACTTGTTAAT
TAACTGAGATTTTTGACAACTTTTCTTCAGTCATTTTTTTCTGTGTCAAC
CTTTCTATGTTTTGGTTATGCGTCAGTTTAATGTTTTCATTTTTGGTATT
ATGATTATTTTATTTTTGATTTATTTGAACTGGAGGTATTGTCTGAATCA
CTAAGNTTCAGTCATTTTTTTCCGTGTCAACCTTTCTATGTTTTGGTTAT
GCGTCAGTTTAATGTTTTCATTTTTGGTATTATGATTATTTTATTTTTGA
TTTATTTGAACTGGAGGTATTGTCTGAATCACTAAGAAAGATTTAACATC
ATCCGAAGGCTTCAAAAATTTTGGAACATATACATAGTCTGAAAAGCACA
ATTAGTGATCTATTTTTTTTTTCATTCAGGGGTTTGTATCCTTTCCATTT
TTTTTCTTAATTTTTATGAGATTTAAGCCTAAAAAAGTTCTTAAAATGTT
CTTATTTTCACGATCTTGTGGGTATTTTTGCCAATTTTGCTCCTAGGAAA
TCGAGTGTTTTAGAGTCCGCAAAGCCTTAAAATATTCTTTGTTCTTAACT
TTTTGGCCATCGAAGCCTTATGTTCTTATATAGTCTGTCCTTATAAAAAA
AACTTGTACAGTATATATTTTAACATTTCCAAAGTCTAAAGAGGTTTGAC
TAGCTACAATGTAATGAAAAAGACCAGATCTTTCTGTGAAACCTGACGCT
TTTGTTGATTTCCACAAACGTGTTTTGGAATGTGAAGATTTCATCACAGT
GCGTCACCGTAGTGGTGCTCTTTAAGTGGCTTCTCATATAAAGTAAATAA
GACCTTTACATCAAGTCTGCTTTAATGACCAGTCAAGTTGTGTAAAAAGT
TTATGACACCTTTTGGCTCCACTTACACATTCTCTACTTTACGGTTGTGG
TGTACGCAAGCTGATTTATATACTGGTATACACAAGTGTCTCGTTTGACC
CATTAATGGAGATACGGTGGTTGTATACATTTGGGAAGTTTTAATGGAGA
CTTTAATCCAGCAACATATAACATATGCTTTGCTCTGCTCTAAAGAATTG
CGGCGAAATGTGACGATCTGATCTGCTTTTTCAGCGGATTCATTAAAAAT
TGTGTTGCGTTTTACCTGGAAATAAAAGCGAGAGCTACTGGCTTCTTCTC
TAATGTTTATGATTGTCATTTCATTTTGACATTGACTTTGATTGTATCCC
TATTCGGAATTCAATGTAGAAAATTAACCTCCAGAACCATCCCCACTGGA
TATTTCAGGTTAGGAACAATGGAACAATAGACCTTATATCCCCGTTGGGA
TTTCGATAGGGGCTTCGATGGGTTTCACTGGGGCTGTGAGACAGGGGTGT
TTTAGTGTCAATTAGAGTAAAGCTTAGTCTCCTTTTGGATATGACATTGC
TAAAAGAAGGAAATTGGAGATATCTGATCGACATAAAAAGTTTTCACAAA
TAGTTTTAAGTTGTTCATCATTATCAGTCTCCACTCGAAATGTTTGTTAA
GGTGGGCCTATCGTTTTGACAGCTTTCTAAACATACTTCTACCCAGTCTT
TCTGATTGAGTAACTACTGTAGACACACAATATTTATTGAAATACAAACA
TTATCGTTAAAGTTTTTTTTACTCTTAAAGTTGCATAAAAAATTTGGCGA
GCTTTGGTATGGCTCTTGACATTGTAAGGGTCAAAATTCAAAGAGTCGGT
TTTTTGTTAAATTTAACTTTGATATTTCTGAGAAACTTACCGTAAGTTGG
TCTAATATCGACATCCCTCTTCTAATTTCGACACCCTTCTTTAGAAATAG
GAATAATGGGAAGGTCGGAATCAGTGATTGAAACCCATTTTCTTTGCTTA
GCGATCTGAAAGTAATAAGTCTTTAGCCTATCAGTGATTCCGACCTTCCT
ATTATTCCCATCTCTAAAGAAGGGTGTCGAAATTAGAAGAGGGATGTCGA
TATTCGACCAACCTACGGTAGTTATTACATTTTCTTCTTTAACAATCCCA
ATTTTGTAGCTTTATGTAGCTGCCGTAAAATTTGAATGTCTGGAGTTTCC
AAAGCCCGTTGAAAGGCTACTCAAGGGAATGGAGTGGAGTGTATAACTCA
AGGGTGCTCTTAAGTTGTTATTCAACGATGTCCTCTAACACATTGGTCAT
TTTCCTTTCAGAAAGAAATAGATACTACTCCGCGACATTGTTAAACTGGG
ACGACGAATGACGAATAAAAGAAAGTCAAGATGGAAGTTCACGTCAAAGG
TTTGTCCTTTATATTAACCCGTGAGATCCGATTGAATTAATAAACATGTA
AAATAAACCAATATATCATTGCACAAACTCAAGTCGGCTCGTACTCTGAA
AGATCTTAAGCCAGTAGACACCCATGTGTCAAAGACCCGCTGGGACCGCA
GCCCCGCTGGATAATTGCCAAAAATGTCGTCATTTCGGCCATAATCACTT
GTATTGAATTGATTTGAAAGGTCTTAAATCAGTGCATATAGTCTGTTGGC
CGGTCAGTATAAAATGCTCTGGTTTAAGAAGTTTATTTTTATCAGCATTT
TCCTTGTTAATGATATAAGATAACATCAAGTTGCTCAGATTTTGAACGCG
TTACCGAATAAGTAATTTTCTTGGGACTGGTTCAACATTTGAAAACATGA
TCAAAATGATCAAATTAACCAATACTGTACCTCAACGCTGAAATACTTCT
CTGGGGACTTATTCAAAATTTAAGAATATGATCAAAGTTTACTAAATAAC
CGATATCTCATCACTCAAGTTAAAGTTAAGTGATAATTAAGTAAGTGTGT
TTTCTTTACTGACTATGATCAAAATTTGAGGAATTGGGGAGGTAATTCTC
TAAAGTTAGTATTTTACCGCCGCCTATAAAAAAACAAATCGAGCACGAAA
AGTATTTAGTAGTTTTTCTTCTTTTTGCTAAAAATTAATTTTAGTGTAAA
AAAAGGTTGCCAAAGTTTTTCAGTGTTGGCAGTTTGTAACTTTAAGACAG
AAGACAGGCAACACATTGTTACTTAAACCTTTTACCTTCTTCTTGTTTCA
GTCTTAATCCCCATCATCGTTCTATTGGCTCTATTGGTCATCACTGTAGT
CGTCATCACATGTTATTTCTACATATGGCCTTACTGTGTCAAAAGGAAAA
AGCAAAGTGCGCAATACTCCAAACTGACGGACCTGCCTGATCTAACAATG
GCAAAAGACAGGCGTAAGCGAAGAAAACCAAGACCGCCCACAATTATTCG
CCCTTCAACTCCACCTCCAGTTCCTACAAAAACATCAGAGCAGTCGAGAA
GGTATAAAACGAGTACAACAACACCGTATTATAATGAATCAATGAAACAC
CTGCCTGTTAAAGGGATTGGGACTACTCATAACCAATTTAACTTCTTATC
AACCTCTACAGACAAAAAACCCTTGTTAAGTCCTGGCAGCAATAAGAAAC
CATTTTTAAGTCCTGGAGGTGTTGAATCAGAGTTTGGAGATGATGAAATC
TTCTACTTCGGTGATGAATCGACTTCGCCAAATCCTCGAGAATTGAGTTT
AATCTCTTCTTCATCCCAAACGAACAGCGACGAGACAAATAATAATTCAT
CTCGAATAACGAGGGAGACAAAAAATCGATTCCGACCCGAACCTATTCTG
AACACCTATAGTAGTAACGAAGATCGATCAGGAATCGATTTATCGGTACC
CGTTTATCGAGAACAGAAATATTCGAATAAACGATCAAAATCAACGAGAC
AACCATTGACGAAACCAAAAGCACTTTCAGTTTTATCACCGGCCGATGGG
AAAATCGAATTCACATTATTCTATAACGCCGATGAGAAATTATTGACAAT
CAATTTAGTGCAATTAAAGGAGATTTTTCTTAAAGCAGAAAGTTTTATTG
GTATATTAAGCGTTTTCGATAAAGACCAGACTAAAGAACGTAAGAAATCG
AACACGGTACACCTAATACGTAGCACCGATAATACGTTACAACTAAGTGA
TTACGCAGATACGGGCTTCCTTATGTATCTAACGTTATTGCGACCCGATA
TGAAATTTAGCAGGCATACATCCGTAGTTTTTGGAAATGACTCTGCCATT
TTTAACGAACGTTTTACAATACCGTGTCAAGATACTAACTTAAAGAAATC
GTGTTTGTGTATACACGCACTTTGTAAGTTTGGCCGTGATGGAGAACCAA
TTGTGCTGGGTGAAGTTACAGTGCCTTTGAAACGTTTACAGAATTCTCAA
GTTCTTCCTTTCTTGGCTGAACTACAATGTCCTGCACAAGAAATCGAGCT
CGAGGTATGTTGTAACATAGTTTGCAGCCCCTTTTTTAATTAGGAGATTT
GGGGGTCCTTTGTAGGGGGAGTACCAAGATTTGCCTTAAAAATTGGGGGC
AGAGAATTCAGGGGCAAGTAAATAAGAAAGGCGGTTGGAAATTTTGGTCA
ACTTTCTGATCGTTTTGGTGGTGCATAGAACGCGAGTTTCCTTCGAAATT
TAATTTTCTGTAAAAAAAGGGGGATAAAATTTTACCTCTCTGCAAACTAT
GAATGAATACATATTTGGCTATGGATACACCACGAAGATATAGAAGAAGG
TTAGAAATTGAATCTCCAATGTAGTTAAAGTCTTATTTCCTTCGAAAGTT
TTAGCCTTCGGCATACAATAAATCCTCTCTCTAATACGTTACGAGCCTTT
ATTATTTGAGTCTTTCTGTAATTCGAACCTAAAAACCTATATTAGATTAC
CTTTTATAGAGGTCTGTTCTCCAGGCTACTGAAAATCCATATAAAAATAC
TCTCTGCAATCTGAATACCTCTATAATTATTTTTATCTTTATAATACGAA
AAAATTTTTCGAGTCCCTTGAAGATCGAATTTTGGAAAGTCAACTAAGCA
TTATTGTATACACTATTACGGCGTTTACGAACATTTCAATTCTAACTTTC
AGCTTTTGGGGCCTTTAGAGGTGGGGTTTCATGGTTGGCGGAGGAGCGGA
ATCGGCCCTTTTTTCGGACGGAGTGGCGGAATTCGGCGAAAATTTAGACG
GAATTACGGAAATTGGGTTCTCTGACGGAGACGGAAAATTAGACAATTTT
AGTGTGGAAAAACGGAATTTAGCAAAAAAATTAGCGGAATTTCGGAATTG
GTAAAAGAAATTCAAAATTTGCGGAATTTTCGACAAAAATATTGAATTTC
AAAGGAATTTTCGGTGACGGAATCTTGGTTCAATTTAAGACGGTTTGACG
GAAATTGGCGAAAAAATGGTGGAATTGCGAAATTGGGTACCCCNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NAAAACTGATCTGCTTTATTTTAGCCTTATTTGAAACCAACAACAGAACT
TGGTAATTTGGAGATTTATCTTTCGTTTAACCCTATGGCATCAAAATTGG
TTGTCAAAATCATTCAAGCTTCATCGCTTCCCAAAATCGGAATGACTGGC
CATCCTAGTAAGTTTCTCTTTCTAGTCCTAGGCCTAATTTAGACGGCCGG
CTTTCCTCTGTTCGAATTGAGAGACGGCAGAAAGTTGCGTAATTTGATGC
ACCTTGCTTTGACTTTTCGTCTAAATCTTTGAAAATGCACACCATGTATG
TGCACAATATTCAATTAGGAAATGTTTTGGGACTCAAGAATTTGTTAAAT
TAAATAAAACAAAGTAACACTCTTTTTTTCAGGGCCGGCTTTTCTATTAT
TTTTTGGCACTTTGAAACTTAAATTGTTTTTATCCTATTTTATTTCTAGG
AAATACTTGAGACTTTAGGTCTACTAATTTGACCCTTATTTTGCATAAAA
TTCAGCCATTCAAGCCTCAGCATTGTTATAAATTGTTCTTATTGGCATTT
TTTGAGCCTTATTGTTCATTTAAAAAAAAATCTAACTTTTCTCTAATTGT
TTGATTTTCAGATGTTTCGGTGAAGACAGCATTGTATTACTGTAATACAC
GACTTGCCAAGGAAACGACGTCTATCCAGAAACGACAACGTTCTCCTATA
TTCAACGAAATGTTTGAATTTAATTTGAGTAAAGATCGAATTTCAGAATG
TGATGTTTTATTTGAGATCCGCCATCATGGACCAATGTTTCGAACAGTAA
TAGGTTACGTCATTGTTGGTAATTCTGCCGGTGGCGAAGGTACAAAACAA
TGGAGACAGTTGTTAGATTTTTCGTGTCATGAGAAACAGTACAAGATCAT
GCCGAAAAAACCAGTCGGGTTAAGTTGATTATAACTTTGCTTTGTTAAGG
GAGTGTAATAAGGAATGGATCCATAAAATTAACTTAAGGGCATAAGGGAA
CTTTAAATTTAATTTCAACGGGAAGTAATTTTAACGGTGTCGAAAGAAAA
TTTGAAAAAAATTATATTTCGCAGGAATTAACTTTCACGCTTTTGCCTTA
TTTTGTACCCATTTCTTTCATTTTTCTATTGATTTTTCGAATTTTTTGAT
GAAAATTGGTCAAATTTGCAATTCACTGGTTCTAATTTTCGTGGTTTTGC
CAAAAAAACCGCGAAAAATAGAGAAAATTAGTTCCCGTGAAAATTAATCT
CACACTACAAAGCAATTTTTTTGCTTAAACAGTATTTTCCGTATTATGTA
AAAGGAGAATAATACATGAAACATCTTCGATTTTCTACTTTAAATTTTTC
TTCTTCAATTTTTTTCCCACCATTTGTAATTTTATTTTTTGCTCCCTTCA
ACGTCGAAATGAAGAAGGTAAGGTGCAAGATTCAATAATCTATGGTGAAC
GGAGATTGTACATTGCAGCTTGCCAATGTGAATTTAAATGGTTTTGTGAC
CTTTATGCTACAAAGAGCCAAAATTGGCCAAAAACCTTCATTTCCCTAGG
GATTTTTAGCAAAATTAGATCAATAACACTTAATTATGACCCTGCTCCCA
TTTTGCTGATTTTGATCAGGAGTACCCACCCCCCTGCTCTTTCCACCCCC
TCCCCTCCTACAATTAAGCACAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003514XLOC_003514Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006164-exon-sc0000063-1575043694:538336..538385TCONS_00006164-exon-sc0000063-1575043694:538336..538385Clytia hemisphaericaexon
TCONS_00006164-exon-sc0000063-1575043694:535987..536074TCONS_00006164-exon-sc0000063-1575043694:535987..536074Clytia hemisphaericaexon
TCONS_00006164-exon-sc0000063-1575043694:533932..535184TCONS_00006164-exon-sc0000063-1575043694:533932..535184Clytia hemisphaericaexon
TCONS_00006164-exon-sc0000063-1575043694:532429..532561TCONS_00006164-exon-sc0000063-1575043694:532429..532561Clytia hemisphaericaexon
TCONS_00006164-exon-sc0000063-1575043694:530913..531974TCONS_00006164-exon-sc0000063-1575043694:530913..531974Clytia hemisphaericaexon
TCONS_00006164-exon-sc0000063-1510915933:538336..538385TCONS_00006164-exon-sc0000063-1510915933:538336..538385Clytia hemisphaericaexon
TCONS_00006164-exon-sc0000063-1510915933:535987..536074TCONS_00006164-exon-sc0000063-1510915933:535987..536074Clytia hemisphaericaexon
TCONS_00006164-exon-sc0000063-1510915933:533932..535184TCONS_00006164-exon-sc0000063-1510915933:533932..535184Clytia hemisphaericaexon
TCONS_00006164-exon-sc0000063-1510915933:532429..532561TCONS_00006164-exon-sc0000063-1510915933:532429..532561Clytia hemisphaericaexon
TCONS_00006164-exon-sc0000063-1510915933:530913..531974TCONS_00006164-exon-sc0000063-1510915933:530913..531974Clytia hemisphaericaexon
TCONS_00006164-exon-sc0000063-1491911889:538336..538385TCONS_00006164-exon-sc0000063-1491911889:538336..538385Clytia hemisphaericaexon
TCONS_00006164-exon-sc0000063-1491911889:535987..536074TCONS_00006164-exon-sc0000063-1491911889:535987..536074Clytia hemisphaericaexon
TCONS_00006164-exon-sc0000063-1491911889:533932..535184TCONS_00006164-exon-sc0000063-1491911889:533932..535184Clytia hemisphaericaexon
TCONS_00006164-exon-sc0000063-1491911889:532429..532561TCONS_00006164-exon-sc0000063-1491911889:532429..532561Clytia hemisphaericaexon
TCONS_00006164-exon-sc0000063-1491911889:530913..531974TCONS_00006164-exon-sc0000063-1491911889:530913..531974Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000063supercontigsc0000063:530913..538385 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.1672	12.5979	6.41576	3.39562	9.46948	7.96148	6.439	7.84253	3.3182	5.49804	4.29449	2.04505	8.08565	9.09045	6.97205	6.50809	3.23412	2.89097	1.45827	1.77502	3.46338	3.29229	16.793	16.8415	5.18919	3.46138	1.92378	2.31521	31.6372	36.2349
Blast
[Close]
BLAST of TCONS_00006164 vs. Swiss-Prot (Human)
Match: SYT7 (Synaptotagmin-7 OS=Homo sapiens GN=SYT7 PE=1 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 4.415e-18
Identity = 77/302 (25.50%), Postives = 134/302 (44.37%), Query Frame = 3 
Query:  885 GKIEFTLFYNADEKLLTINLVQLKEIFLKAESFIGILSVFDKDQTKERKKSNTVHLIRSTDNTLQLSDYADTGFLMYLTLLRPDMKFSRHTSVVFGNDSAIFNERFTI---PCQDTNLKKSCLCIHALCKFGRDGEPIVLGEVTVPLKRLQNSQVLPFLAELQCPAQEIELEPYLKPTTELGNLEIYLSFNPMASKLVVKIIQASSLPKIGMTGHPNVSVKTALYYCNTRLAKETTSIQKRQRSPIFNEMFEFNLSKDRISECDVLFEIRHHGPMFRT-VIGYVIVGNSAGGEGTKQWRQLL 1778
            G+I+F++ YN  E  LT+ +++ +E  L A+ F G    F K                                 +YL    PD K    T V   N +  +NE F     P +    +   L +    +F R+ +PI  GEV++PL ++  +Q+  F  +L+         P    +   G L + L +NP A+ ++V II+A +L  + + G  +  VK  L Y + R+ K+ T   KR  +PIFNE F F++  +++ E  ++  +     + R  VIG + +   +G    K W+ ++
Sbjct:  137 GRIQFSVGYNFQESTLTVKIMKAQE--LPAKDFSGTSDPFVK---------------------------------IYLL---PDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRN-DPI--GEVSIPLNKVDLTQMQTFWKDLK---------PCSDGSGSRGELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTMKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKDMI 388
The following BLAST results are available for this feature:
BLAST of TCONS_00006164 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SYT74.415e-1825.50Synaptotagmin-7 OS=Homo sapiens GN=SYT7 PE=1 SV=3[more]
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