TCONS_00006162 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006162
Unique NameTCONS_00006162
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2592

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006162 ID=TCONS_00006162|Name=TCONS_00006162|organism=Clytia hemisphaerica|type=transcript|length=2592bp
CGAAGGTTTCATAGTCATCTCCGCCACCGCCGCCCGAAGTTGACAATCGA
CTTGGGCGCCTCATGGGCGCCGGGTTGATGTTCTCTAAATTTGTTTGAGA
ACCACCATCCATTTGAAGGCGTTCATAATTTCCAATACCAGCAGCCAGGG
CGGTGTTTAGTTTGCTGAGGGCGTTTATATTCTTACTAAAAGATTTCTTG
GGTGTTGAAGCTACAAGAACATTATTAATATCTTCATAGTCATCATGAGA
TGAAGGGGCGTTGATTTTCGGCTGTTTGGTGGAAGGAGAAGTCGGGGCGC
TCTTTTTCGGCGGTTTGGTGGAAGGGGGCGTGGAATTGACTTCTTGTATG
TTTCCATATTCATCAGTCATATTCTTAACAACGTTATCTAAaggtttctt
gatttttgagtTCTGCACAGGAACAGCGACTGGCTTTGTGTGGTCTCTAT
ACCCTTTAGAAACTTTTGAACTTTCCTTCGGGATTTGTTTGGTTATATCT
GGGTCTCTCCCGGGCTTTTGTGCCCGGCTTGTTGAAGGCGGTGTAGGATC
ATTTTTGCTTTTACTCTTAGATTGAGCTTTGGGAATACCAGCGTCTCGGC
CATATTTGTCTGCCGTTTTAGACTGCGTCGTAGATACATGGCCAGTAGCA
GGTGTATCACGTCTTCTATCGTCTCCCGCGGGCCTGGACCGNGGGCCAGT
AGTAGGTGTATCACGTCTTCTATCGTCTCCCACGGGCCTGGACCGAGTAG
CAGAAGATTCTTTAGGGATGCTTCGTGGAGCAGAGGATCTGGAAGGCTCT
TTCTGTATGACGTTAACAATATTAGGGGCAGGAGTACGAGCGGCAGAGGG
TTGCTTCCCGATACCTCCTTGGACAACATCGGACACATTCTCGTAAATGT
CATCATCTCCGTAACCTTCTTTACGACCTTTCGATTTGGTAATCGGGATC
GGTTCAAAGCCTCTCTTTTTATCTGATTTCGTTGATTGTGTTTTGGGGAT
GGCAGCCGACTTTGTGTTGCGTGCAATACTCTCTTGTTGTCTAATGGGTT
CTTTGTTCTGTGCAAGACTTTCTTGCTTTTGGGTAGTTCTTCTATCGTCT
CCCGCTGGCCTTGACCGAGTAGCAGAAGATTCTTTAGGGATGCTTCGTGG
AGCAGAGGATCTGGAAGGCTCTTTCTGTATGACGTTAACAATATTAGGGG
CAGGAGTACGAGCGGCAGAGGGTTGCTTCCCGATACCTCCTTGGACAACA
TCGGACACATTCTCGTAAATGTCATCATCTCCATAACCTTCTTTACGACC
TTTCGATTTGGTAATCGGGATCGGTTCAAAGCCTCTGTTTTTATCTGATT
TCGTTGATTGTGTTTTGGGGATCCCAGCCGTAGGATTTGTATTGCGTGCG
ATACTCTCTTGTTGTTTAATAGGTTCTTTGTTCCGTGCAAGACTTTCTTG
CTTTTGNGTTTTTATCTGATTTCGTTTTATCTGATTTTGTTGATTGTGTT
TTGGGGATCCCAGCCGTAGGATTTGTATTGCGTGCGATACTCTCTTGTTG
TTTAATAGGTTCTTTGTTCCGTGCAAGACTTTCTTGCTTTTGTATGGGTT
CTATCCTACGGTCTTCAGAAATTGGTTGTTGTTGTCGAACCTTGACATTT
TGAGGTTGTGGCGTTGGCTGTTGATTCAAGGTCTGCGACGCTGCGCCGTC
GCCACGGAAATCATTAACGTTTTGATAGTTATTATCATCATCGATCAGCT
GTTCGTAATGATCTTCGTGTGCTGGCTCTGTGTAGCCTTGTTGTGATTGG
TCCGTGTAGCCTTGTTGTGATTGGTCCGTGTAGCCTTGTTGTGATTGGTC
CGTGTAGCCTTGTTGTGATTGGTCCGTGTAGCCTTGTTGTGATTGGTCCG
TGTAGCCTTGTTGTGATTGGTCCGTGTAGCCTTGTTGTGATTGGTCCGTG
TAGCCTTGTTGTGATTGGTCCGTGTAGCCTTGTTGTGATTGGTCCGTGTA
GCCTTGTTGTGATTGGTCCGTATAGCCTTGTTGTGATTGGTCTATGTAGC
CTTGCTGTGTTTGGTCTATATAGCCTTGTTGTGATTGGTCCGTATAGCCT
TGTTGTGATTGGTCTATGTAGCCTTGCTGTGTTTGGTCCGTGTAGCCTTG
TTGTGATTCGCCCATGTAGTTTAGCTGTGACGGGTCTATGTAGACCGGCT
CCGTGTAGCCTTGATCCGTGTAGCCTTGATCCGTGTAGCCTTGATCCGTG
TAGCCTTGATCAGTATAGCCTTGGTCAGTATAGCCTTGGTCAGCATAGCC
TTGGTTTGTGTAGCCTTGCTGCGATGGGTCCATATAGCCTGGATTCATGT
AGATCGGCTCCGTGTAGCCTTGCTCCGTGTAGCCTTGGTCAGTATAGCCT
TGGTCAGTATAGCCTTGGTCAGTATAGCCTTGATTTGTGTAGCCTTGGTC
GTAGGTTTGTTGCACCGGGTTCATTTTCTGCGTGGGCGAAGCCTCAGACT
GGCGGGCGGTAAGAGCTTCCTGTTGCTGGACGGCCGCTAGTTGAGGCTGT
TGGAATGCAACCTGAAAGTATCGTGATAAAAAGTAATGACTT
Run BLAST on NCBI

transcript from alignment at sc0000063:342539..345973-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006162 ID=TCONS_00006162|Name=TCONS_00006162|organism=Clytia hemisphaerica|type=transcript|length=3435bp|location=Sequence derived from alignment at sc0000063:342539..345973- (Clytia hemisphaerica)
CGAAGGTTTCATAGTCATCTCCGCCACCGCCGCCCGAAGTTGACAATCGA
CTTGGGCGCCTCATGGGCGCCGGGTTGATGTTCTCTAAATTTGTTTGAGA
ACCACCATCCATTTGAAGGCGTTCATAATTTCCAATACCAGCAGCCAGGG
CGGTGTTTAGTTTGCTGAGGGCGTTTATATTCTTACTAAAAGATTTCTTG
GGTGTTGAAGCTACAAGAACATTATTAATATCTTCATAGTCATCATGAGA
TGAAGGGGCGTTGATTTTCGGCTGTTTGGTGGAAGGAGAAGTCGGGGCGC
TCTTTTTCGGCGGTTTGGTGGAAGGGGGCGTGGAATTGACTTCTTGTATG
TTTCCATATTCATCAGTCATATTCTTAACAACGTTATCTAAAGGTTTCTT
GATTTTTGAGTTCTGCACAGGAACAGCGACTGGCTTTGTGTGGTCTCTAT
ACCCTTTAGAAACTTTTGAACTTTCCTTCGGGATTTGTTTGGTTATATCT
GGGTCTCTCCCGGGCTTTTGTGCCCGGCTTGTTGAAGGCGGTGTAGGATC
ATTTTTGCTTTTACTCTTAGATTGAGCTTTGGGAATACCAGCGTCTCGGC
CATATTTGTCTGCCGTTTTAGACTGCGTCGTAGATACATGGCCAGTAGCA
GGTGTATCACGTCTTCTATCGTCTCCCGCGGGCCTGGACCGNGGGCCAGT
AGTAGGTGTATCACGTCTTCTATCGTCTCCCACGGGCCTGGACCGAGTAG
CAGAAGATTCTTTAGGGATGCTTCGTGGAGCAGAGGATCTGGAAGGCTCT
TTCTGTATGACGCTAACAGTATTAGGGGCAGGAGTACGAGCAGCAGAGGG
TTGCTTCCCGATACCTCCTTGGACAACATCGGACACATTCTCGTAAATGT
CATCATCTCCGTAACCTTCTTTGCGACCTTTCGATTTGGTAATCGGGATC
GGTTCAAAGCCTCTGTTTTTATCTGATTTCGTTGATTGTGTTTTGGGGAT
CCCAGCCGTAGTCTTTGTGTTGCGTGCGATAATCTCTTGTTGTTTAATGG
GTTCTTTGTTCCGTTCAAGACTTTCTTGCTTTTGGGTAGTTCTTCTATCG
TCTCCCGCGGGCCTGGACTGAGTAGCAGAAGATTCTTTAGGGATACTTCG
TGGAGCAGAGGATCTTGAAGGCTCTTTCTGTATGACGTTAACAATATTAG
GGGCAGGAGTACGAGCGGCAGAGGGTTGCTTCCCGATACCTCCTTGGACA
ACATCGGACACATTCTCGTAAATGTCATCATCTCCGTAACCTTCTTTACG
ACCTTTCGATTTGGTAATCGGGATCGGTTCAAAGCCTCTCTTTTTATCTG
ATTTCGTTGATTGTGTTTTGGGGATGGCAGCCGACTTTGTGTTGCGTGCA
ATACTCTCTTGTTGTCTAATGGGTTCTTTGTTCTGTGCAAGACTTTCTTG
CTTTTGGGTAGTTCTTCTATCGTCTCCCGCTGGCCTTGACCGAGTAGCAG
AAGATTCTTTAGGGATGCTTCGTGGAGCAGAGGATCTGGAAGGCTCTTTC
TGTATGAGGCTAACAGTATTAGGGGCAGGAGTACGAGCAGCAGAGGGTTG
CTTCCCGATACCTCCTTGGACGACATCGGACACATTCTCGTAAATGTCAT
CATCTCCGTAACCTTCTTTGCGACCTTTCGATTTGGTAATCGGGATCGGT
TCAAAGCCTCTGTTTTTATCTGATTTCGTTGATTGTGTTTTGGGGATCCC
AGCCGTAGTCTTTGTGTTGCGTGCGATAATCTCTTGTTGTNTTTTATCTG
ATTTCGTTTTATCTGATTTCGTTGATTGTGTTTTGGGGATCCCAGCCGTA
GTCTTTGTGTTGCGTGCGATACTCTCTTGTTGTTTAATGGGTTCTTTGTT
CCGTTCAAGACTTTCTTGCTTTTGGGTAGTTCTTCTATCGTCTCCCGCGG
GCCTGGACTGAGTAGCAGAAGATTCTTTAGGGATACTTCGTGGAGCAGAG
GATCTTGAAGGCTCTTTCTGTATGACGTTAACAATATTAGGGGCAGGAGT
ACGAGCGGCAGAGGGTTGCTTCCCGATACCTCCTTGGACAACATCGGACA
CATTCTCGTAAATGTCATCATCTCCATAACCTTCTTTACGACCTTTCGAT
TTGGTAATCGGGATCGGTTCAAAGCCTCTGTTTTTATCTGATTTCGTTGA
TTGTGTTTTGGGGATCCCAGCCGTAGGATTTGTATTGCGTGCGATACTCT
CTTGTTGTTTAATAGGTTCTTTGTTCCGTGCAAGACTTTCTTGCTTTTGN
GTTTTTATCTGATTTCGTTTTATCTGATTTTGTTGATTGTGTTTTGGGGA
TCCCAGCCGTAGGATTTGTATTGCGTGCGATACTCTCTTGTTGTTTAATA
GGTTCTTTGTTCCGTGCAAGACTTTCTTGCTTTTGTATGGGTTCTATCCT
ACGGTCTTCAGAAATTGGTTGTTGTTGTCGAACCTTGACATTTTGAGGTT
GTGGCGTTGGCTGTTGATTCAAGGTCTGCGACGCTGCGCCGTCGCCACGG
AAATCATTAACGTTTTGATAGTTATTATCATCATCGATCAGCTGTTCGTA
ATGATCTTCGTGTGCTGGCTCTGTGTAGCCTTGTTGTGATTGGTCCGTGT
AGCCTTGTTGTGATTGGTCCGTGTAGCCTTGTTGTGATTGGTCCGTGTAG
CCTTGTTGTGATTGGTCCGTGTAGCCTTGTTGTGATTGGTCCGTGTAGCC
TTGTTGTGATTGGTCCGTGTAGCCTTGTTGTGATTGGTCCGTGTAGCCTT
GTTGTGATTGGTCCGTGTAGCCTTGTTGTGATTGGTCCGTGTAGCCTTGT
TGTGATTGGTCCGTATAGCCTTGTTGTGATTGGTCTATGTAGCCTTGCTG
TGTTTGGTCTATATAGCCTTGTTGTGATTGGTCCGTATAGCCTTGTTGTG
ATTGGTCTATGTAGCCTTGCTGTGTTTGGTCCGTGTAGCCTTGTTGTGAT
TCGCCCATGTAGTTTAGCTGTGACGGGTCTATGTAGACCGGCTCCGTGTA
GCCTTGATCCGTGTAGCCTTGATCCGTGTAGCCTTGATCCGTGTAGCCTT
GATCAGTATAGCCTTGGTCAGTATAGCCTTGGTCAGCATAGCCTTGGTTT
GTGTAGCCTTGCTGCGATGGGTCCATATAGCCTGGATTCATGTAGATCGG
CTCCGTGTAGCCTTGCTCCGTGTAGCCTTGGTCAGTATAGCCTTGGTCAG
TATAGCCTTGGTCAGTATAGCCTTGATTTGTGTAGCCTTGGTCGTAGGTT
TGTTGCACCGGGTTCATTTTCTGCGTGGGCGAAGCCTCAGACTGGCGGGC
GGTAAGAGCTTCCTGTTGCTGGACGGCCGCTAGTTGAGGCTGTTGGAATG
CAACCTGAAAGTATCGTGATAAAAAGTAATGACTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003512XLOC_003512Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006162-exon-sc0000063-1575043694:345179..345973TCONS_00006162-exon-sc0000063-1575043694:345179..345973Clytia hemisphaericaexon
TCONS_00006162-exon-sc0000063-1575043694:344432..344803TCONS_00006162-exon-sc0000063-1575043694:344432..344803Clytia hemisphaericaexon
TCONS_00006162-exon-sc0000063-1575043694:342539..343963TCONS_00006162-exon-sc0000063-1575043694:342539..343963Clytia hemisphaericaexon
TCONS_00006162-exon-sc0000063-1510915933:345179..345973TCONS_00006162-exon-sc0000063-1510915933:345179..345973Clytia hemisphaericaexon
TCONS_00006162-exon-sc0000063-1510915933:344432..344803TCONS_00006162-exon-sc0000063-1510915933:344432..344803Clytia hemisphaericaexon
TCONS_00006162-exon-sc0000063-1510915933:342539..343963TCONS_00006162-exon-sc0000063-1510915933:342539..343963Clytia hemisphaericaexon
TCONS_00006162-exon-sc0000063-1491911889:345179..345973TCONS_00006162-exon-sc0000063-1491911889:345179..345973Clytia hemisphaericaexon
TCONS_00006162-exon-sc0000063-1491911889:344432..344803TCONS_00006162-exon-sc0000063-1491911889:344432..344803Clytia hemisphaericaexon
TCONS_00006162-exon-sc0000063-1491911889:342539..343963TCONS_00006162-exon-sc0000063-1491911889:342539..343963Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000063supercontigsc0000063:342539..345973 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0348788	0.0186264	0	0	0	0.0292258	0	0.0164102	0.0316975	0	0.0139631	0	0.0232424	0	0.00701049	0	0	0	0	0	0.0238393	0	0	0.118885	0.151974	0.0117159	0.0217866	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006162 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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