TCONS_00006160 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006160
Unique NameTCONS_00006160
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1218

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006160 ID=TCONS_00006160|Name=TCONS_00006160|organism=Clytia hemisphaerica|type=transcript|length=1218bp
AATCAGGCTTTGTTGACAAATCACTTGttaaCGATGAAGCTAGCAACCAT
GCAGAAGACATGTCTcgTGCAAGAAGCCTACATAATCTTTTTGGgAATGA
TACTTCAGCAGAAGAAATTGCGGATTATTACAAAAGGAAATATGCGGACT
CTGAAAGAGAATATGAAGGAGATTACTCTGGCGATTATGAAGCCCCTGCA
GAAATCGAACAACAAAGTTTACTACCAGATGTCAAAGACCCCAACTTGTG
GATGGTCAGATGTCGTATGGGGGAAGAAAAACAAGTAGTGTTTATGTTGA
TGAGGAAATACATCTCCCTTTCATCAGGAGAAACTCCTTTACAAATCAAA
TCAGCGATTGCAGTTGAGGGGCTAAAAGGATACATTTATGTCGAAGCATT
CAAACAGAGTCACGTCAAGCAGGCTATTGAAGGTTTCGGAGCACTTCGTA
TTGGTATTTGGACACAACAGATGGTACCCATCAACGAAATGCCAGATGTG
TTGAAGGTCGTCAAAGATTTGGTGCAAATCAAAGCTAAAAGTTGGGTTCG
CATCAAACGTGGTATTTATAAGGATGATATTGCTCAGGTTGACTATGTGA
ATACAGCAAGGAATCAGGTGACGTTGAAAATCATCCCGAGGATAGACTAC
AGCATGATGCGTGGTGACATGCGCTCGCTCAGCGACGAAGCAGAAAAACG
TAAACGAAAAAGAAGACCTCCACAAAAACTCTTCGACAGAGATGCTATCA
AGAATATCGGTGGAGATTTATCAATGGATGGTGACTTTTACCTCTTCGAA
TACAATCGATATCGCCAAGGATTTTTGTACAAAACCATGGTAATGTCAGC
CATCATGTCGGAAGGTGTTAAACCAAGTCTCAGCGAATTGGAAAAATTTG
AGACATCCATTGATGATGCTGAGCTTGAATTGGGACGTGAACGAGGTCGC
GAGGAGGCCTCTCACTCCTTTGCAGCAGGAGACATGGTGAGAGTGTCCGA
AGGTGAATTGATCAACCTCAAAGGGAAAGTCATGACCATTGATGGCAATA
CAATCCTCATCCTTCCAAAGCATGAAGACTTAAAGGATCCATTAGAGTTT
CCAGCGCACGAGTTGGAGAAGTACTTCAAAGAAGGAGACCACGTTAAAGT
CATCAAAGGAAAGTACGAAGGAGATACCGGATTGATCGTTCgagtggaag
aaaatgtcatcGTACTTT
Run BLAST on NCBI

transcript from alignment at sc0000063:292186..301313-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006160 ID=TCONS_00006160|Name=TCONS_00006160|organism=Clytia hemisphaerica|type=transcript|length=9128bp|location=Sequence derived from alignment at sc0000063:292186..301313- (Clytia hemisphaerica)
AATCAGGCTTTGTTGACAAATCACTTGGTAAATATCTGCTTTTTGACCAA
GCATCGGGCCTTTCATTAGCATGTTGCTGTCCATGGTGATGTATGTACAT
GCCACTGTCTGCGGTACTGTATATCCCCTTTTGAAGAATCAATGCTTTTT
TAATTCAAGTTCGTTTCGGAAGAAACGCCCGTTGTACCTAATACAAACAA
ACAATCGACTATTGCTATGTTGCCAGTCCTTCATGCGATTCGGNTGAGCC
GCCTGACTGTGAACCCCTTAAAATTAATCTAAAGACCTCAAGACCTCAAA
GTCCTGGGTTACTAGGCTATCTAAGTAAAATATTGACTCAATCTATCTAA
TTTGACCTCTGTACTGCTCACAAAATCACTTGAGTTTTAACCCATTCCAT
TTATTTCATTGATTAGAATTTTGGCTATGAATTTTTCTCTCTTCTTTCTT
TCAGATGTTGATGATGATTACGAGGACGAAGAAGATGAAGGGGAATCAGG
CTTTGTCGACAAATCACTTGGTAAGTAATATCTGCTTTTTGACCAAGCAT
CAGGCCTTTCATTCATCACTGTCCATGGTGTTGTAGGTCCATAGAATCAG
GCTTTGTTGACAAATCACTTGGTAAGTAATATCTGCTTTTTGACCAAGCA
TCAGGCCTTTCATTCATCACTGTCCATGGTGTTGTAGGTCCTTAGAATCA
GGCTTTGTTGACAAATCACTTGGTAATAATATCTGCTTTTTGACCAAGCA
TCGGGCCTTTCATTCATCACTGTCCATGGTGTTGTAGGTCCATAGAATCA
GGCTTTGTTGACAAATCACTTGGTAAATATCTGCTTTTTGACCAAGCATC
GGGCCTTTCATTAGCATGTTGCTGTCCATGGTGATGTATGTACATGCCAC
TGTCTGCGGTACTGTATGTCCCCTTTTGAAGAATCAATGCTTTTTCAATT
CAAGTTCGTTTCGGAAGAAACGCCCGTTGTACCTAATACAAACAAACAAT
CGACTATTGCTATGTTGCCAGTCCTTCATGCGATTCGGCTTCTTGTTATA
TTGTTAAGTTGTATAAACTTTCAACTTATCTGTTCGTACATCCTGCTGCT
ACTTAATCTGCCATTTAAAATGCTGTTTTCAAAATTCCACTCCGTTAATG
GTAAAATTTTAAAGGTACAGGGCGTTTGTGTGTGTCCTCATATATTTTTT
TGATTTTACTTGTGACCCTGCCCCCCCCCCTGAGATGTAATCATTGTACT
AGTCATAACACTGTGCGTTTTAAAATGGCTTGATAATAAAAAAGAAGTAT
GCTATGCACAAGTAAAATGCAATGTTGCAACTCTTCCAGAAATCTGTCTC
GTTGAGATTCTTCACTATGAGTTTGTCTTTGGAAGAAAAAATGTCTGATT
TTATGGAAATTCTTTCTAGATTAACCAGAAATTGCTGCAACACTGAAAAT
AAACTTATTCTAATATTTTGTTTTAGTTAACGATGAAGCTAGCAACCATG
CAGAAGACATGTCTGTAAGTCGATAATTTTTGATAATATGGTAGCAGAGC
TATGGGACGAAAGAATTTATCTCTAAAAACTGGAATAGACAAATATTATG
CATTTTTGAATTGTGCAGTAGGCTTCCCTCCCCAGAGCTGTGGCTACCAC
ATTGAAACAGTTTTTCTAACACAATGACTACCGTCAATGGCTACTAATCT
ACCCTTTTTTTATCGAGGTACTTAAGGGACTACTGCATAAAAAATTAAAC
TTGATCCATGAATAGCTATGATGAAAAACATTTGAAAAATTCAAGCCAAT
GTTTGTTGTCAACAGTGATTCTATCTTGACCCTTTTGGATAATTCAAAGA
AATTTTCTTCTTTTTTAGCGTGCAAGAAGCCTACATAATCTTTTTGGGTG
AGTGGTAATTATTTTTAAAAAAGTGAAGTAAAATCTTTTTTTCTTTTCAA
GCGACAAAATGGTTATTTACTTTGAATACTTTCCATCTTTTACTGTTTTC
AAAAGAAAGCAATAATCTGTAATAATTATATACTACGCTTTATAATTTTC
GTTTCTTTTCTTTTTTCTCAGGAATGATACTTCAGCAGAAGAAATTGCGG
ATTATTACAAAAGGAAATATGCGGACTCTGAAAGGTAATTTTCTACAAAA
CTTAACTGAAGGCCGGTCTCTTCAACTTCCTTCAACCTTTTTTTTTGTTT
GCGCGAAACTTTTTTATGACATAATCTTTTTTTCAGGCAAAAAAGGTTAA
GAAAAAAACTGTCACCCATTTCGCGTGAAAGTTGAGACCGGCCTTGAAGT
GGAACATATAGGAGAAGCGTGGATTTTTAATGAACTCGTTTGGTTTCTGA
TGGGGTCTCTTCAGACCACTAGGTTGTCTCTCCTCAAAATACTAGATAGT
TTTGTACTAAGTAACCCTATAGTAACTTTCTATAATTTGTATCTTTAAAA
GCATAATGGGTATGGAGAATATTAGGGAGAATACAATTGAGTATCTATAA
CCCCGAACCTCTTCAAGTCGAATGTCTCAAATAAGTTATGTGGCTTCTTT
TGCTACCAAACCCTTGTAAAGAGACCCAATTGTATTATCACAGAATATTT
GCGACTGCAGTCAAGTTTTCTTTTGCCCAGGGTAGAGTAAGGGACCACCC
TTTTCCCTGGATTTCTCCACTTATCCTTGACCCATCTCTATAGTCGCTAA
GCATTAAGCAGAGAGTCATCAACTATTAATTTGGATTGGGGTTCTTGATA
CTCGCAACCTTGCGCATGGTAGCCGGATGCTCTAAGTAGTAAGTCTGCGA
CCCCAAGGCTTCTCTTTCGATAGCTATCTACCCAAAGGTAGGGGAGGGCG
CCTCTCTTTTTTCCTGGATTTCTCCACTTACACCCATGATCCTTCTCTTA
ATTGCTGAGCATCAAGCAGCGAGGTATCAAGTACCATTTAGGAAATCTTT
GGTATGACACGGCTGGGAGTTGAACCTACAACCTTGCGCACCGTAGCCGG
GTGCTCTACCACTGCACTACGGTCGCTCTACCTTCCTGCCGCCCTTACGA
CGTATTGTTATACTTTTCTAACATGCAAATTTTTTATATTTTGTTTAGAG
AATATGAAGGAGATTACTCTGGCGATTATGAAGCCCCTGCAGAAATCGAA
CAACAAAGTTTACTACCAGATGTCAAGTAAGTTTGTTGAGATAATAGATT
TATAAAGCCCGAAGGGCTTGAAGTCGTGCTTTGGCTGAAAAGTGTGCCGA
GGTTAGATAGGAAATCCTACCAAGGTCACGTGACATTACAATAGAATTTC
AGCGCTTGACCAATCAGAAGCTTCTTGGGTTTTCGAAAACAATAGCAACA
ATATCTTTTCCGATATTCAATTTTTTTGTCTGCAATGGCTTAAAGCACGA
CATCGGAAGTCGGAATAACAGAGTTTTTTGCCAGATTCATGTCAAGTAAG
TTTGCATTGCCTGNATTGGGGTTCTTGATACTCGCAACCTTGCGCATGGT
AGCCGGATGCTCTAAGTAGTAAGTCTGCGACCCCAAGGCTTCTCTTTCGA
TAGCTATCTACCCAAAGGTAGGGGAGGGCGCCTCTCTTTTTTCCTGGATT
TCTCCACTTACACCCATGATCCTTCTCTTAATTGCTGAGCATCAAGCAGC
GAGGTATCAAGTACCATTTAGGAAATCTTTGGTATGACACGGCTGGGAGT
TGAACCTACAACCTTGCGCACCGTAGCCGGGTGCTCTACCACTGCACTAC
GGTCGCTCTACCTTCCTGCCGCCCTTACGACGTATTGTTATACTTTTCTA
ACATGCAAATTTTTTATATTTTGTTTAGAGAATATGAAGGAGATTACTCT
GGCGATTATGAAGCCCCTGCAGAAATCGAACAACAAAGTTTACTACCAGA
TGTCAAGTAAGTTTGTTGAGATAATAGATTTATAAAGCCCGAAGGGCTTG
AAGTCGTGCTTTGGCTGAAAAGTGTGCCAAGGTTAGATAGGAAATCCTAC
CAAGGTCACGTGACATTACAATAGAATTTGAGCGCTTGACCAATCAGGCG
ATCTTGGGTTTTCGAAAACAATAGCAACAATATCTTTTCCGATATTCAAT
TTTTTTGTCTGCAATGGCTTAAAGCACGACATCGGAAGTCGGAATAACAG
AGTTTTTTGCCAGATTCATGTCAAGTAAGTTTGCATTGCCTGCTGTAAGT
TTTTAAAATGTAATGCTTGGTAAATCTGCAGTATATCAAGTTTGGGGTAT
AATGTGCTATAAGTTTGGAACGAGAATTTTTTTATCAGATATCAAAAGCT
CCCATTCTTGAGATGCCATTGTTCTAAGCTTCACCATTGGAACAAAGGAT
GTCAGCGATTTCTGTGCTCACTTCGTTTCTGATTTTCTGAAGTCTCGATA
CTGAAAGGTTGCTTTAGTAAGCTCTATCAATTCCTATAAAAATGATTTCA
TTTTTATTTTTGCCACAGAGACCCCAACTTGTGGATGGTCAGATGTCGTA
TGGGGGAAGAAAAACAAGTAGTGTTTATGTTGATGAGGAAATACATCTCC
CTTTCATCAGGAGAAACTGTGAGTGATTACCATTTGACGCCACTCTGCCA
CCGCCAACGCCCCCAAAAAAACCTCTTCTTTTCATCCAGTATCCGATCAC
TATAATAAAGACTGGAATTCATGATATGCACCACTGGAATGACTTCACGA
AATTATGCAACTTTTCTGTTTTTGTTCCACCCAATACGTCACTTTTTCTA
TTGTTTAAGTGAGGTATTGGGTGGAAAATTTTCAAAGTTCTCAGAAGACT
CTCCAGTGGTGCATATATCATGAATTCTCATATTTTTAGTCAAGTCACGA
GTAATTTACGGTTAATGCATCAGCACTTGTGCCCTGGGAACAAAGGGAAT
ATTTTATCGACCACACCCTGTCTCGACTCGAGGAAAATTCTTTCCAATAA
AAAATATCTACATTTTTCGATTTTGCCCCTTCATATAGGGATCACTATAC
TGATTTGATTCTTGCTCTAACCTTCTAGCCTTTACAAATCAAATCAGCGA
TTGCAGTTGAGGGGCTAAAAGGATACATTTATGTCGAAGCATTCAAACAG
AGTCACGTCAAGCAGGTTTGGGAAATTTACTTGGCACTTACATTATTGGA
ACTAATTTTCGCGGAATTAATTTTAGCGTTTTTTAAACCGGCGAAAAACA
ATTTTTTTTCAATTTTATCGAAAAAATTGAAAAATCCCTTGAAAAATGAA
AGAAACTTGTCCAAAAGAGGGCAAAACCGCGAAAATTAAAATCCGCAAAA
ATTAGTTCCAATAAGGTATTTTCATGCTTGAAAATGATTCTCTGGAATTT
TTTTAGCCTTTGCTATTATCCCTACTATCCAACAGGAAATAGAATTGCTA
AACAAACTCTTATTGATTAAAATGACCTAACATATTCATGATATGCACCA
TTGCAATGTCTTCTGACATTACATCATGGACCTAGCAGCAGATTGGTTGT
AAGTGACGTAAAATTAATCAATACGTCACTTTCAACCAATCAGCTGTTGG
GTCCGTGATGCATTTCATGAATTATCAGTAATTAGAGAATGATAATGATT
TTAGAAGTTAATCAGTATGTGTTAATGTGGTGCTTATCACCCTCCGTTCT
TTACTCTTCACCAGGCTATTGAAGGTTTCGGAGCACTTCGTATTGGTATT
TGGACACAACAGATGGTACCCATCAACGAAATGCCAGATGTGTTGAAGGT
CGTCAAAGATTTGGTGCAAATCAAAGCTAAAAGTTGGGTTCGCATCAAAC
GTGGTATTTATAAGGATGATATTGCTCAGGTATGAGAAAATGTTCTGTAT
AGGTATCACGGATATCTTATATAAAGATATATCCTATATTGTATATCTAT
ATAAGACGATGTAGCTCCATCTAGTGTTTTCTTTATTATGTGCGATATTG
TGCAGGGTCTAAAATTCTTAAGAGGCTTCCACCGAAAATATCTCAAACGT
GGCCTGTAACTGCTATGAAAGACTACGCAATGGCTCTGTTAATAACTTTT
CTTCTGAACTGTAATTAGAACATTTATTACATCTAATTCTAGGTTGACTA
TGTGAATACAGCAAGGAATCAGGTGAGAAACAGTCTTAGTAAAAATAAGC
TCTCTAGCGTAAATCGAACGTTTGCTTCCATAATGGCGGAAGTTACGTAA
CTACTTAATAAAACCTGAAAACCTACATACGTCATATATCGGAAGCTTTT
GTCTGTGCTTTTCTTTGTCTTGTCTGACTATGCACAATGATTTGATATGT
ATGATAGGACCTACTTGGAATCGGAAGACTCAGTATCATACTTGTCTATC
CTTTATCAATTACCAAATATAACTATATTATTTCATGGTTTTAGGTGACG
TTGAAAATCATCCCGAGGATAGACTACAGCATGATGCGTGGTGACATGCG
CTCGCTCAGCGTAAGTATGGATTCCCACCTTCACCCCGCCCAAAAAAAAA
AATCCAAAATAAAAAGCTTATGGTTGGTTGATTCATTTTTTCTAATTTTT
TGTAAGCTCTTGAATGTGACAGACACCGATTTTCTTAAAAAGATTAGTCC
CATTAAAACAAATTTCACTAGTTTCAAAATTAAGAAATTTTTCATTTTCT
CTATAGGACGAAGCAGAAAAACGTAAACGAAAAAGAAGACCTCCACAAAA
ACTCTTCGACAGAGATGCTATCAAGTAATGAAATTTATTTTGGTGTAGTA
ATGTCATATATAAAGTCCATTCTCTTTAAGTATGTACCCTGCTAGCATGT
GGAAACCACTCCGATGGAGAAAGTCTAATTACACTGCTATAGTTTCTACA
TTATGGCGGCGATAAAGCGAATGTAATAAAAGCGAAAAAATACCTTTACT
TGTCCACGAAAAAGAAAAAAAACTTGTATGTATAGTATAGTCAAGTATTG
TTCCCTATTAATCCCAGCTTCCTAAAAATGACTTAGCCTCAGGAAAAATT
TTCACCCTGCGACAAGATTTTCGAAATGTAAAAGAAAGGACTGTGGTTTT
GGATGGTAGCCTTGGGGGACACTCAAGGTAAATGACCTACCGTACGTGCA
GTCCTTATGAGCTGCAGCTTCTCAAAGTGCACTGTAAGGGTCTAATTCAG
CAAAGATGAGAAAGAGTGCACTCTAAGGGTGTGAAATTTCGAAAATCTGA
CCAAATAAGTGTTAAAAAATAGNAGAGTGCACTCTAAGGGTGTAAAATAG
CGAATATCTGGCCAAATAAGTGGTAAAAAAATAAGTGGTTTCAAATCGTA
CATTGGAGATTCGACTCTAACTTCTGGCCAAACCTATTGTTCCAGACAAT
TGTATGTTTCATATTTTTTTAACAGGAATATCGGTGGAGATTTATCAATG
GATGGTGACTTTTACCTCTTCGAATACAATCGATATCGCCAAGGATTTTT
GTACAAAACCATGGTAATGTCAGCCATCATGTCGGAAGGTGTTAAACCAA
GTCTCAGCGAATTGGAAAAATTTGAGACATCCATTGATGATGCTGAGCTT
GAATGTGAGTTTATAGACCTTATCGGAGTTTTTGATTTTTCTAAAAAAGC
GATGCATTGTGGGATTGTCTCGAGTGTATCACAATAGAATTCCCTCGAGG
AACTCCTAAGAGATTTCTATTGTAATACACTCGAAACAATCCCACAATGC
ATCGCTTTTTTAGAAAAATCCAAAACTCTGATAAGATCTATTTTCGCTTA
TCTCCCCCCTTTATTTTAAACAGTGATCGAGGTCTTTCCGTCTAAATGAA
ATACTCTGGAGAACCTAATAAGCGCCCCCTCCTTCCTTCGTTAAAATTAA
TTTTTCGAAAATTTTCCACCCAGGACATTCTTATTCCAAGCCCCGCTTTT
TTATCTCCCTAATATTTAATTATCTCCTTCACTGAAAATTGCCATCCTGA
ATGGCATGGAACTTTGAGTATGAAATTAAATTAAAACGTTTTCTTTACTC
AAACTAGTAATTATCTCATTAATATTTTTTCCAGTGGAACGTGAACGAGG
TCGCGAGGAGGCATCTTACTCATTTACGTCAGGAGGACAAATGACTACGA
ATTACATTTTTTATCTCCCTAATATCTAATTATCTCTTTAATATTTCTTC
CAGTGGGACGTGAACGAGGTCGCGAGGAGGCCTCTCACTCCTTTGCAGCA
GGAGACATGGTGAGAGTGTCCGAAGGTGAATTGATCAACCTCAAAGGGAA
AGTCATGACCATTGATGGCAATACAATCCTCATCCTTCCAAAGCATGAAG
ACTTAAAGGTATGATGGTTTGGTGGAAGANATACAATCCTCATCCTTCCA
AAGCATGAAGATTTAAAGGTACGATGGTTTGGTGGAAGAGTTTTACTGGG
CTACAGTATTCTATGAATTAACTCTTATTATTCACAATGTACAAAGTTCT
TCTCAGACGGACTTCCGTCTCAATGAAGTATATATTTAAAGACTTTTCCG
TCTCATATTCTGCATAATGCACCAAAATTTCAAGAATACGCGCCACTTTG
TTGTTTAAAATCCATTGTTCGTCTTTGAGTACCTTGCTTTGAGTACTGTT
GGAAAGTTTTTTCGTATTTTTCATTGTCTGAATTAACTCTATTTTTGATG
ACTGACTTTCTGTCCTACCTATTAAAGTTGTTAGAGTAGGCAAAAAACAT
GCAGAAGGTTGTCTGTTGAATTCTTTGCTTGGCAAAGAGATTGAATCAGT
CATTCTTATAGGCTATTTCACAGTCGCAAAGCGTAATGGGTAATCAGGAC
CACTGCACGCTAAGACGACTTACTATTGTTATTGGTCCAAAGTTTTGAAA
GATTTTGAAGATTTTTACGTCTAGCCAACAGAAAGCCGTTTTGGAGGTGC
ATTCAGTCCTAATTACCCATGACCCATTTCGACTGTAAAATGGCCTATTG
GCATCAAAAGAGGGCAACGTATTGACTTATAATTCTCTTTTTTAGGATCC
ATTAGAGTTTCCAGCGCACGAGTTGGAGAAGTACTTCAAAGAAGGAGACC
ACGTTAAAGTCATCAAAGGAAAGTACGAAGGAGATACCGGATTGATCGTT
CGAGTGGAAGAAAATGTCATCGTACTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003511XLOC_003511Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006160-exon-sc0000063-1575043694:301287..301313TCONS_00006160-exon-sc0000063-1575043694:301287..301313Clytia hemisphaericaexon
TCONS_00006160-exon-sc0000063-1575043694:299800..299837TCONS_00006160-exon-sc0000063-1575043694:299800..299837Clytia hemisphaericaexon
TCONS_00006160-exon-sc0000063-1575043694:299417..299445TCONS_00006160-exon-sc0000063-1575043694:299417..299445Clytia hemisphaericaexon
TCONS_00006160-exon-sc0000063-1575043694:299180..299242TCONS_00006160-exon-sc0000063-1575043694:299180..299242Clytia hemisphaericaexon
TCONS_00006160-exon-sc0000063-1575043694:297408..297485TCONS_00006160-exon-sc0000063-1575043694:297408..297485Clytia hemisphaericaexon
TCONS_00006160-exon-sc0000063-1575043694:296746..296845TCONS_00006160-exon-sc0000063-1575043694:296746..296845Clytia hemisphaericaexon
TCONS_00006160-exon-sc0000063-1575043694:296199..296285TCONS_00006160-exon-sc0000063-1575043694:296199..296285Clytia hemisphaericaexon
TCONS_00006160-exon-sc0000063-1575043694:295485..295649TCONS_00006160-exon-sc0000063-1575043694:295485..295649Clytia hemisphaericaexon
TCONS_00006160-exon-sc0000063-1575043694:295192..295221TCONS_00006160-exon-sc0000063-1575043694:295192..295221Clytia hemisphaericaexon
TCONS_00006160-exon-sc0000063-1575043694:294854..294919TCONS_00006160-exon-sc0000063-1575043694:294854..294919Clytia hemisphaericaexon
TCONS_00006160-exon-sc0000063-1575043694:294590..294657TCONS_00006160-exon-sc0000063-1575043694:294590..294657Clytia hemisphaericaexon
TCONS_00006160-exon-sc0000063-1575043694:293760..293938TCONS_00006160-exon-sc0000063-1575043694:293760..293938Clytia hemisphaericaexon
TCONS_00006160-exon-sc0000063-1575043694:293006..293160TCONS_00006160-exon-sc0000063-1575043694:293006..293160Clytia hemisphaericaexon
TCONS_00006160-exon-sc0000063-1575043694:292186..292318TCONS_00006160-exon-sc0000063-1575043694:292186..292318Clytia hemisphaericaexon
TCONS_00006160-exon-sc0000063-1510915933:301287..301313TCONS_00006160-exon-sc0000063-1510915933:301287..301313Clytia hemisphaericaexon
TCONS_00006160-exon-sc0000063-1510915933:299800..299837TCONS_00006160-exon-sc0000063-1510915933:299800..299837Clytia hemisphaericaexon
TCONS_00006160-exon-sc0000063-1510915933:299417..299445TCONS_00006160-exon-sc0000063-1510915933:299417..299445Clytia hemisphaericaexon
TCONS_00006160-exon-sc0000063-1510915933:299180..299242TCONS_00006160-exon-sc0000063-1510915933:299180..299242Clytia hemisphaericaexon
TCONS_00006160-exon-sc0000063-1510915933:297408..297485TCONS_00006160-exon-sc0000063-1510915933:297408..297485Clytia hemisphaericaexon
TCONS_00006160-exon-sc0000063-1510915933:296746..296845TCONS_00006160-exon-sc0000063-1510915933:296746..296845Clytia hemisphaericaexon
TCONS_00006160-exon-sc0000063-1510915933:296199..296285TCONS_00006160-exon-sc0000063-1510915933:296199..296285Clytia hemisphaericaexon
TCONS_00006160-exon-sc0000063-1510915933:295485..295649TCONS_00006160-exon-sc0000063-1510915933:295485..295649Clytia hemisphaericaexon
TCONS_00006160-exon-sc0000063-1510915933:295192..295221TCONS_00006160-exon-sc0000063-1510915933:295192..295221Clytia hemisphaericaexon
TCONS_00006160-exon-sc0000063-1510915933:294854..294919TCONS_00006160-exon-sc0000063-1510915933:294854..294919Clytia hemisphaericaexon
TCONS_00006160-exon-sc0000063-1510915933:294590..294657TCONS_00006160-exon-sc0000063-1510915933:294590..294657Clytia hemisphaericaexon
TCONS_00006160-exon-sc0000063-1510915933:293760..293938TCONS_00006160-exon-sc0000063-1510915933:293760..293938Clytia hemisphaericaexon
TCONS_00006160-exon-sc0000063-1510915933:293006..293160TCONS_00006160-exon-sc0000063-1510915933:293006..293160Clytia hemisphaericaexon
TCONS_00006160-exon-sc0000063-1510915933:292186..292318TCONS_00006160-exon-sc0000063-1510915933:292186..292318Clytia hemisphaericaexon
TCONS_00006160-exon-sc0000063-1491911889:301287..301313TCONS_00006160-exon-sc0000063-1491911889:301287..301313Clytia hemisphaericaexon
TCONS_00006160-exon-sc0000063-1491911889:299800..299837TCONS_00006160-exon-sc0000063-1491911889:299800..299837Clytia hemisphaericaexon
TCONS_00006160-exon-sc0000063-1491911889:299417..299445TCONS_00006160-exon-sc0000063-1491911889:299417..299445Clytia hemisphaericaexon
TCONS_00006160-exon-sc0000063-1491911889:299180..299242TCONS_00006160-exon-sc0000063-1491911889:299180..299242Clytia hemisphaericaexon
TCONS_00006160-exon-sc0000063-1491911889:297408..297485TCONS_00006160-exon-sc0000063-1491911889:297408..297485Clytia hemisphaericaexon
TCONS_00006160-exon-sc0000063-1491911889:296746..296845TCONS_00006160-exon-sc0000063-1491911889:296746..296845Clytia hemisphaericaexon
TCONS_00006160-exon-sc0000063-1491911889:296199..296285TCONS_00006160-exon-sc0000063-1491911889:296199..296285Clytia hemisphaericaexon
TCONS_00006160-exon-sc0000063-1491911889:295485..295649TCONS_00006160-exon-sc0000063-1491911889:295485..295649Clytia hemisphaericaexon
TCONS_00006160-exon-sc0000063-1491911889:295192..295221TCONS_00006160-exon-sc0000063-1491911889:295192..295221Clytia hemisphaericaexon
TCONS_00006160-exon-sc0000063-1491911889:294854..294919TCONS_00006160-exon-sc0000063-1491911889:294854..294919Clytia hemisphaericaexon
TCONS_00006160-exon-sc0000063-1491911889:294590..294657TCONS_00006160-exon-sc0000063-1491911889:294590..294657Clytia hemisphaericaexon
TCONS_00006160-exon-sc0000063-1491911889:293760..293938TCONS_00006160-exon-sc0000063-1491911889:293760..293938Clytia hemisphaericaexon
TCONS_00006160-exon-sc0000063-1491911889:293006..293160TCONS_00006160-exon-sc0000063-1491911889:293006..293160Clytia hemisphaericaexon
TCONS_00006160-exon-sc0000063-1491911889:292186..292318TCONS_00006160-exon-sc0000063-1491911889:292186..292318Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000063supercontigsc0000063:292186..301313 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.31905	3.89943	1.48653	0.244004	14.2701	13.604	9.74594	11.1861	8.76583	10.136	8.78606	7.72738	7.64535	8.14138	6.47382	9.68675	8.04905	8.34531	2.81722	3.62531	4.52805	4.17796	1.94787	3.42152	6.57427	6.09453	2.58178	0.953951	2.38569	3.69566
Blast
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BLAST of TCONS_00006160 vs. Swiss-Prot (Human)
Match: SPT5H (Transcription elongation factor SPT5 OS=Homo sapiens GN=SUPT5H PE=1 SV=1)

HSP 1 Score: 444.121 bits (1141), Expect = 3.450e-145
Identity = 234/389 (60.15%), Postives = 294/389 (75.58%), Query Frame = 3 
Query:   54 EDMSRARSLHNLFGNDTSAEEIADYYKRKYADSEREYEGDYSGDYEAPAEIEQQSLLPDVKDPNLWMVRCRMGEEKQVVFMLMRKYISLSSGETPLQIKSAIAVEGLKGYIYVEAFKQSHVKQAIEGFGALRIGIWTQQMVPINEMPDVLKVVKDLVQIKAKSWVRIKRGIYKDDIAQVDYVNTARNQVTLKIIPRIDYSMMRGDMRSLSDEAEXXXXXXXXXXXLFDRDAIKNIGGDLSMDGDFYLFEYNRY-RQGFLYKTMVMSAIMSEGVKPSLSELEKFETSIDDAXXXXXXXXXXXXASHSFAAGDMVRVSEGELINLKGKVMTIDGNTILILPKHEDLKDPLEFPAHELEKYFKEGDHVKVIKGKYEGDTGLIVRVEENVIVL 1217
            ED S AR L NL+  D   EE+ +YY +KYA S    E  Y G  E   +I QQ LLP VKDPNLW V+C++GEE+     LMRK+I+    +TPLQIKS +A E +KGYIYVEA+KQ+HVKQAIEG G LR+G W QQMVPI EM DVLKVVK++  +K KSWVR+KRGIYKDDIAQVDYV  ++N ++LK+IPRIDY  ++  M SL D   KRK+ +RPPQ+LFD + I+++GGD++ DGDF +FE NRY R+GFL+K+  MSA+++EGVKP+LSELEKFE   +  +LE+  E   +E  H+F  GD V V EGELINL+GK++++DGN I I+PKHEDLKD LEFPA EL KYFK GDHVKVI G++EGDTGLIVRVEEN ++L
Sbjct:  117 EDRSGARRLQNLW-RDQREEELGEYYMKKYAKSSVG-ETVYGGSDELSDDITQQQLLPGVKDPNLWTVKCKIGEERATAISLMRKFIAYQFTDTPLQIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGNLRLGYWNQQMVPIKEMTDVLKVVKEVANLKPKSWVRLKRGIYKDDIAQVDYVEPSQNTISLKMIPRIDYDRIKARM-SLKDWFAKRKKFKRPPQRLFDAEKIRSLGGDVASDGDFLIFEGNRYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDLEVVTESTGKEREHNFQPGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDMLEFPAQELRKYFKMGDHVKVIAGRFEGDTGLIVRVEENFVIL 502
The following BLAST results are available for this feature:
BLAST of TCONS_00006160 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SPT5H3.450e-14560.15Transcription elongation factor SPT5 OS=Homo sapie... [more]
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