TCONS_00006152 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006152
Unique NameTCONS_00006152
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1492

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006152 ID=TCONS_00006152|Name=TCONS_00006152|organism=Clytia hemisphaerica|type=transcript|length=1492bp
CTTCTTTATCTAAACTGATTTGCTTCTCAAACGACCATTGCTTGAAGGCC
CCTTTCTTCGTCTGCCAATCTGGACTTGGACTTGGCGACTTCTGCAAATC
AATACTGGTGTGTTTCTCAAAAGACCATTGTTTAAAGCCCTTTCGTTTTG
TTTGCCAGTCTGGTGAAGTTGTAGGACTCTTTGATTTCCTTCCCTCAAAA
CTATTTTGTTTTTCGAAAGACCATTGTTTAAAACCATTGATCTTTTGGCT
TTTGGCTGGAGGTTTCGAAGTAGCACTTTCAAGCGATTCTCGAGAATCTT
TGCTAGGTCTGGAAGACATTTGAGAATTCCGGTTCAGGCTGGTAACATTT
TCTGTATTCTCGGATACACTTGATTCTTGAATGTCTTCATCACCATTAAT
GTTGGTCTCGATATTGGATTGATTTATTTCTTCTGCTTTTTCGGATTCTT
CTGGAGTTAATGGACTATCAGTATTGTCCTTATTGCCATCAACCGGGATT
GAAGAGATTCCCAGTCCATCCAAACTTCCTTGTTTCTCTATTGAACCAAA
ATAGAACATTTGCTTTTCTGGAGATTGTAAGGTTTGGTTTGGTGATTTCA
ATTCATCAGTGCTCCTCTGCTTCTCAAAAGacgatttcttttgtttgaaa
ttatcATTCCTCTTGGTCGAGTCAGCCCTGGTTTCGTCGAAGCTTGCCTG
TTTTTCAAAAGACGATTTCTTTTGCTTGAAACTATCATTCCTCTTGGTCG
AGTCAGCCCTGGTTTCGTCGAAGCTTGCCTGTTTTTCAAAAGATGATTGC
TTAAGTTTAAAGGCTTTTCTTTTCTGATTTGAAGCTAGCATCTCCTTATT
TGAAAGCTTAGAGGGGCTTTTCAGAGAAGCTTCTTCAAAGCTACTCTGTT
TCTCAAACGATGACTGCCTCAATTTgaacgttttgtttttgttgtccTCG
CTTGGAGATTTTTCTCCTCTGCTTTGAGATGGACTGGTTGATTCATCGAT
ACTTTTCTCGAAAGATGATAATTTTAATTTGAAGGCGTTTTTCTTATGGT
TTTTGCTTTTGAGCTTTTCCTCTGAATCTTGAATGAAGCTTGAAGGCATT
TTCTCTGAATCTTGAGTTGGACTAGAAGGCATTTTCTCTGAATCTTGGGT
TGGACTAGAAGGCGTTTTCTCTGAATCTTGGGTTAGACTAGAAGGCGTTT
TCTCTGAGTCTTGGGTTGGACTAGAAGGCATTTTCTCTGTGTCTTGGGCT
GGACTAAAAGATGTTTTCTCTGAATCTTGGGTTGGGGTCAAAAGTGTTTC
CTCTTCGATTTCATTGGAACTGAAGAGCTTTTCTTCTAGATCTCTATTCA
GGCTAAGCGACTTCTcttttgacttttgattttGGTTTGGGGTCAAGCTT
GAAGATTTTTCTTCGAACTTTTGCACTGGACTTGAAGACTTTTCCTGGTC
TTTTGTCGGACTCGGAAAGTTTTCATATGTACTCTGAGTTGT
Run BLAST on NCBI

transcript from alignment at sc0000063:273536..275159-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006152 ID=TCONS_00006152|Name=TCONS_00006152|organism=Clytia hemisphaerica|type=transcript|length=1624bp|location=Sequence derived from alignment at sc0000063:273536..275159- (Clytia hemisphaerica)
CTTCTTTATCTAAACTGATTTGCTTCTCAAACGACCATTGCTTGAAGGCC
CCTTTCTTCGTCTGCCAATCTGGACTTGGACTTGGCGACTTCTGCAAATC
AATACTGGTGTGTTTCTCAAAAGACCATTGTTTAAAGCCCTTTCGTTTTG
TTTGCCAGTCTGGTGAAGTTGTAGGACTCTTTGATTTCCTTCCCTCAAAA
CTATTTTGTTTTTCGAAAGACCATTGTTTAAAACCATTGATCTTTTGGCT
TTTGGCTGGAGGTTTCGAAGTAGCACTTTCAAGCGATTCTCGAGAATCTT
TGCTAGGTCTGGAAGACATTTGAGAATTCCGGTTCAGGCTGGTAACATTT
TCTGTATTCTCGGATACACTTGATTCTTGAATGTCTTCATCACCATTAAT
GTTGGTCTCGATATTGGATTGATTTATTTCTTCTGCTTTTTCGGATTCTT
CTGGAGTTAATGGACTATCAGTATTGTCCTTATTGCCATCAACCGGGATT
GAAGAGATTCCCAGTCCATCCAAACTTCCTTGTTTCTCTATTGAACCAAA
ATAGAACATTTGCTTTTCTGGAGATTGTAAGGTTTGGTTTGGTGATTTCA
ATTCATCAGTGCTCCTCTGCTTCTCAAAAGACGATTTCTTTTGTTTGAAA
TTATCATTCCTCTTGGTCGAGTCAGCCCTGGTTTCGTCGAAGCTTGCCTG
TTTTTCAAAAGACGATTTCTTTTGCTTGAAACTATCATTCCTCTTGGTCG
AGTCAGCCCTGGTTTCGTCGAAGCTTGCCTGTTTTTCAAAAGATGATTGC
TTAAGTTTAAAGGCTTTTCTTTTCTGATTTGAAGCTAGCATCTCCTTATT
TGAAAGCTTAGAGGGGCTTTTCAGAGAAGCTTCTTCAAAGCTACTCTGTT
TCTCAAACGATGACTGCCTCAATTTGAACGTTTTGTTTTTGTTGTCCTCG
CTTGGAGATTTTTCTCCTCTGCTTTGAGATGGACTGGTTGATTCATCGAT
ACTTTTCTCGAAAGATGATAATTTTAATTTGAAGGCGTTTTTCTTATGGT
TTTTGCTTTTGAGCTTTTCCTCTGAATCTTGAATGAAGCTTGAAGGCATT
TTCTCTGAATCTTGAGTTGGACTAGAAGGCATTTTCTCTGAATCTTGGGT
TGGACTAGAAGGCGTTTTCTCTGAATCTTGGGTTAGACTAGAAGGTGTTT
TCTCTGTGTCTTCGATTGGAATAGAAGGAATTTTCTCTGTGTCTTGAGCG
GGACTGGACGGTGCTTTCTCTGAGTCTTCCGTTGGACTAGAAGGCGTTTT
CTCTGAATCTTGGGCTGGGCTAGAAGGCGTTTTCTCTGAGTCTTGGGTTG
GACTAGAAGGCATTTTCTCTGTGTCTTGGGCTGGACTAAAAGATGTTTTC
TCTGAATCTTGGGTTGGGGTCAAAAGTGTTTCCTCTTCGATTTCATTGGA
ACTGAAGAGCTTTTCTTCTAGATCTCTATTCAGGCTAAGCGACTTCTCTT
TTGACTTTTGATTTTGGTTTGGGGTCAAGCTTGAAGATTTTTCTTCGAAC
TTTTGCACTGGACTTGAAGACTTTTCCTGGTCTTTTGTCGGACTCGGAAA
GTTTTCATATGTACTCTGAGTTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003510XLOC_003510Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006152-exon-sc0000063-1575043694:273966..275159TCONS_00006152-exon-sc0000063-1575043694:273966..275159Clytia hemisphaericaexon
TCONS_00006152-exon-sc0000063-1575043694:273536..273833TCONS_00006152-exon-sc0000063-1575043694:273536..273833Clytia hemisphaericaexon
TCONS_00006152-exon-sc0000063-1510915933:273966..275159TCONS_00006152-exon-sc0000063-1510915933:273966..275159Clytia hemisphaericaexon
TCONS_00006152-exon-sc0000063-1510915933:273536..273833TCONS_00006152-exon-sc0000063-1510915933:273536..273833Clytia hemisphaericaexon
TCONS_00006152-exon-sc0000063-1491911889:273966..275159TCONS_00006152-exon-sc0000063-1491911889:273966..275159Clytia hemisphaericaexon
TCONS_00006152-exon-sc0000063-1491911889:273536..273833TCONS_00006152-exon-sc0000063-1491911889:273536..273833Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000063supercontigsc0000063:273536..275159 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.438182	0.707291	0	0	0	0	0	0	0.0381181	0	0	0	27.3271	42.5189	0	0.749341	0.587539	0.200768	0.542075	0.18752	1.59397	1.92115e-07	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006152 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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