TCONS_00006141 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006141
Unique NameTCONS_00006141
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3831

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006141 ID=TCONS_00006141|Name=TCONS_00006141|organism=Clytia hemisphaerica|type=transcript|length=3831bp
TTCAgtattaacaaaacaattagAAATGAATGTGATAGTAGCAGTTAAGC
AATACATCACCAAGATGATTGATGATGCTGGTCCAGGAATGAAAGTTCTT
CTCATGGATAAAGAAACCACTGGAATTGTCAGCATGGTGTATGCTCAAAG
TGAGATATTACAGAAAGAAGTCTTTCTCTTTGAAAGAGTTGATACACAAG
CCAGAGAAACCATGAAGCACCTCAAAGCGATATGTTTTGTCAGACCAACA
AAGGAGAATATTGAAGCATTAaagaaagaattgaaaataccaaaatatGG
ATCATATTATATATATTTTAGCAACGCCATATTGAAGAATTATGTCAAAC
AACTGGCTGAATCTGATGACCAAGAGGTCGTCAAAGAAGTTCATgaattt
tatgCTGATTTCTTTGCAATTAGCCCACATGTCTTTTCTTTGAATATTGT
TGGTTGTGCGAAGGGTAAAAATTGGTTTGGCGACAGACAGGATCGTGTTA
CTGATGGTTTGATTGCTGTCTTATTATCCTTGCGAAAGAAACCAATCATA
AGATATCAAACAGCCTCGTCAATGTGCAAGCGACTGGCTGAAAGTGTTAT
GTTGAAAATGGGTCAAGAATCGGGATTATTTGAATTCCGGCAATCAGATA
TTTCGCCACTGTTATTGATTGTCGATCGGTCGGATGACCCTGTCACTCCA
CTGTTAAATCAGtggACTTATCAAGCGATGGTTCATGAGTTATTAAGTAT
CAAGAACAACCGTATTGATTTATCCAAAGTTCCTGGCATCTCAAGAGAAC
TAAAAGAAGTTGTTTTATCAGCAGAGCACGATGATGTCTACCTGGACAAT
ATGTATAAAAATTTCGGTGAAATTGGTATCAATATAAAACAATTAATGAA
TGAGTTTCAGAAGAATGCAAAAAGTAATCAAAAGCTTGACTCAGTTGCTG
ATATGAAGgcgTTCGTAGAGAATTATCCACAATTTCGTAAGATGTCTGGC
ACAGTCTCAAAACATGTGACTGTAGTGAGCGAATTATCACGTTTAGTTGG
TGAACACTGTTTGTTGGAGCTGTCCGAACTCGAACAAGACATGTCCGCTA
AATCAGATCACTCCATGCATTTACAGGCGATAAAGAAACTGTTGGCGAAT
CCAAAAGTACGAGATATAGACGCTGTCCGATTAGTTCTACTGTATATCTT
ACGTTACGAGAAAACGCAAGGCAACGACGCCGGTGGTTTACGTAACGATT
TGAAGAAACGCGGCGTCAGCGATACTATGTGTAAGATTGTTTACAACATG
GTAGAATATGCTGGCGCAACTGTCCGAACCAGTGACATTTTCGGACAAAA
CAAAAACGCTCTTTCTATGACCAAAAAATTCATGAAAGGACTGAAGGGCG
TCGAAAATATTTACACACAACACAAACCATTACTTCATGAGACGCTGGAT
AACTTGATTAAAGGAAAATTACCCGATCGCTTATTCCCATACCTTGGAAA
AGATACTTTCAGAGATAGacCTCAAGATGTCGTTGTTTTCATGGTGGGAG
GTGCAACATATGAGGAGGCTCTTACCGTATACGAACTGAACCGGGCTAAC
CCTGGTGTCCGCATCATTTTGGGCGGTACTTCAATTCATAATACGGAAAG
ctttttagaGGAAATCAAAGAGAGCACTATGATCACCGatacgatgacgt
catcgacgaGTGTCGCTTATTCCAAATCGTCAAGATATGAAGTATAGTTG
TAAGGTAaaggtaataataataataataatctaCTGAATACAAAGGTATC
AATGGTATTGGCCCAACAGacttataaagcccgaagggctggaTGTTGTG
CCTTAAGCCATCGCATGCTAAAAAAATCGaatattggaaaaaaatcaaat
attggagaaaaaaaatattactattgttttcaaaaacccgcgaagcttct
aaTTGGTCAAGCGTTGAAATTCTAtagtaatgtcacgtgacctaggtagg
aaatcctacctaaccacggcaaaATTTTCAGCCGAAGCACGACATTTAgc
acttcgggctttataaatctatgattgTTTGCATGTCGTGAACGCGGGCG
GTGAAAAGTGGGCGTTACTTATCAAGATAAACTATTTCAATTCGTTGCAT
ACACAATGGTACTGTAGACTTGTCGAATATTATTGATGCTTAACTGTAGG
GTTTTGGTGAACCCTAATGTCCACTTAATGTGTGGGCACTGGGCTGGTTA
GACTATAATGGGTTTTTTCTTAAAATGTTGTAAATTTAGTTCTGTTCAAT
TTTACCGGGTGTGCCACAAATAAGTAACCCTCTTTGATTTGATATTGTAG
GCAGTAGAAAAGAGATTAGCCTTTTTTtgacatatttttaaattgacatt
ttaggtttttgaacataacttttgaaccaatgaagtaaaattaaaaagta
atacaccaaattttaagttaggctttcatctgaatgattccgaaacaatc
tttgaaaaatctcttttctactgcctacaatatcaaatcaaagagggtaa
cttattgtggcacacccggtagttTTTCAATTACTcgctttttttgtaag
aatggtGTATTTCTATTACATTGAACTATCGTTATGTTAGGTTAAAATTT
AGCCTaaaattggcatttttaggTTCAGTTGGCAAATTTTATGATAGTaa
tattgaatatatttttcctatattctttattttttggccaaattaTCATG
AATATTCTCATAGAGTatattctttataaaaaaacgtgcattcTTTACGT
GTGCATATTTTTTAAAGTCTTCTAGCTGTAATTCTAGTTCTCCTAataat
tatttgaaactttctacaatttatacacctttttgatcgtagtcgcgcgg
tcaggcgcgtgccactttattatttaatttaccaccctaaactcgatcca
atcctgtTTTTGGCACCTTTTTCCATTgtctattcttgatatgcgtaagt
caagatggcGTCATATTTTCAacggaagcacccgaaaaaAACCGGATTTT
GACcaccgtgtttctatttttagtaacagagaggggtCAAATCCCGGATT
TTTTCGAGTGTTttcgctagaaaaatgacttacacATGTCAAGAATAGgt
tcgaaaaaaagactggaacGGTTTTTGGGTGGTAAAACGGAGAAAAGGgt
ctacggtcgaaaaggtgtattcattAAAATAATACCTTTATGTTTACATa
tgcttaaccctttaagtgccaatgtcgtatatatcagacatggactatgt
aggagggcgaagccctcctgtaaagCCCAGTTTGAGTTGGAAATCGTCAT
tattggtctaactcgtagaaATCGGATCGGGCTTCATGGccaagcaaaaa
aatcaaaagtgagtcttttcagcgagattttaagctaaaaagtaaaaaaa
atgcaaatatttgacaaaaatccacttttttaagattttaaccgtttttt
atcatttttggtcaacgagtgatccaataacctccaaatttggccctgat
taacttgattctgtcctccagcgaattagtttgaagttttaccactcggC
GCCTTCctatcattcagtcaggtccgcgcagcgaaggcgcctaaaagaaa
gaggatacaataaacgagcttctaactccttctagatccggtaagccttt
aaagttcgaactagcgattttctttaaaaaacttagaaaaaaatgaccgt
ggcacttaaagggttaaagaaaaattgcaaaaatcattttttttctaaaa
ttttcatttttttaaaatcactcaaaaaggc
Run BLAST on NCBI

transcript from alignment at sc0000063:507128..520576+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006141 ID=TCONS_00006141|Name=TCONS_00006141|organism=Clytia hemisphaerica|type=transcript|length=13449bp|location=Sequence derived from alignment at sc0000063:507128..520576+ (Clytia hemisphaerica)
TTCAgtattaacaaaacaattagAAATGAATGTGATAGTAGCAGTTAAGC
AATACATCACCAAGATGATTGATGATGCTGGTCCAGGAATGAAAGTTCTT
CTCATGGATAAAGAAACCGTAAGAAacagttttgttttgatgtcgCAATC
CATCCcttattttacctttttttgccTCATTGTAGAGGATATAGTGTTAT
GACTAAaaaacaattgatttttaaggaATGCATTTTTAAACAACAGGGAG
TGTCAGCTTTTTTGCAGTCATGCAAATTGTATATAAGGaattttattatt
gtattgGTTTCTATTTCTGGCAATTTGTTGTAAAGATGATAAAAAACATT
TGGTACCTCATTAATAACTAGCGGGTTCAGGCATCTGTGTTTTTCTTTGC
CGGATAGGGTAGGcttctaatttgtctacatcctgactAACTGAGGACAA
GGGTAAGTCAGCACTGTCCTCAATTTTGCGAGTTACAGGtttctcaaaaa
tgaaaaactcgCTATTCTAGTTATTGTGAcaatacaaaacttttttcttt
gttttgggaaAATACTACAGTAGGAAATGTCTATTAAAAAAAGCcacatt
gtttacattttttccaCAGACTGGAATTGTCAGCATGGTGTATGCTCAAA
GTGAGATATTACAGAAAGAAGTCTTTCTCTTTGAAAGAGTTGATACACAA
GCCAGAGAAACCATGAAGCACCTCAAAGCGATATGTTTTGTCAGACCAAC
AAAGGtttgaatttttacaattactaaaatatttttgccgGAGTATTAAG
GTGATAATCTCTGGTAAATTAAGTTCCTTTTTAATGGCACAGGCCTGATC
GTAAAGAAACTCTCCTTACAACTCCCTTTCACGCTTGCAATCAGATTTAG
GGATGAAGCATATACAAAGAGAAACAGCCATTTGCTTCTTTCCTTCGATA
GCAACATGGGATTTAACTAAAAGTCTTCCGTAAAGGGAAGTTTATAACTG
CTTTTTGATTAATAATTACGTATTTCCAATGATTATACTATTAGCTTTAA
AACCTTAGCTAATGGATTACTTCAGNTATTTCCAATGATTATACTATTAG
CTTTAAAACCTTAGCTAATGGTTTACTTCAGGTTTGCTTTAATTTAAGGA
GTCACTGTAACTTTgattgttattattttatttaacaGGAGAATATTGAA
GCATTAaagaaagaattgaaaataccaaaatatGGATCATATTATATATG
TGAGTGTTTTATTAGGCTTTTTCAGagaatatccagggggtaaggACAAA
TTGCCTGCATATCCAAGCAAAAGACAAGACACAATGTACAGGTATCCTCA
ACCCTTGAACATCCAGGATAGCATAAGAGgtctttatttttaattttctg
taaaaaccTATTATTGTACAAGTAATTGTAAAATCTTTAATGGGTTAATT
TTAGCACGCACTTTCTTTGCTGATTAAGAATCTTCTTTAATGTGTACTGA
ATTTTGTGAGAATAGACTATTTTTTCAGCTAGTTtagatttaaaagattt
ttcgtaaaaactaaattttgggTTGAAGAAAGTTCGAAATCTTTAAATGA
ATTGTTTCTACTAGATTTTAGCAACGCCATATTGAAGAATTATGTCAAAC
AACTGGCTGAATCTGATGACCAAGAGGTCGTCAAAGAAGTTCATGTaagt
ttttcattgattttttaattatttttcgcAGATGTGTAATGATTGCATAC
TACTTATTGTGCAGATTTGTGATAACtgcaaaaaccttttttaaaatcAA
GTCCTACATTAAGTGCATAGCCAAACTAATTTTGGAATATCATATTACTG
AGGTcaagcataccaggataatcacgacgacggatgaaaaatgtaatagg
ctagtgaaaatacgaattttgattggttgaaactcactagcctgttaaat
tttcgttcgtcgtcgtgattttgccgatttacttaacctcactaatctCC
CTTCTAATACCCATTATTTAGCCCCGAGTCCACTTaaggctttttgatag
actggatggcacgATATTTATTGAATATAGAGTATTAAAAAAGCTATTCA
TACTGATTTcccatttttaatatttttcaactcaaagtaGTTAGAATTAG
AATTATCAACTCCTGGAGATATTAGCCCAAAATGCccaaagaaaaatttc
taatGCTACTTTATTGTTTAGCATCAGTTAAATGTCAAtgtctttacatt
ttttttaggaattttatgCTGATTTCTTTGCAATTAGCCCACATGTCTTT
TCTTTGAATATTGTTGGTTGTGCGAAGGTATGCCAAAATTAGTCAGTTTT
AAAGTACTTGATTTAAAGGTTTGGTTTTTAGAAAATAAGAGTGTTTgatt
actcatcaattttaattcgcaAGCTTTTTTACGTTGGATAGACACGGATA
TGGAGCAAGATTAGTCagaaagagaagaagaaaaagattttttgcttata
taagcataatatGACAATAGGGAGACGCTGGcctaatatgaaatatgtgt
ctgatatgacacatatgtaaaaataaatccTTTAAGTGTAGCTGAttcta
tttttcatgaaaattaagAAGCAAATGTAATATTTTAAAGCGCAACTGAT
AAATGATttataattttctaaaaaagtgatgttTATGAAACTTTATTGAT
GAAAGAATtcgtttttgaataaatttaaaataaagtGCAATGGCTTCAAG
GATGTTTATACATCACAAAGAAATTAAGCTATAATTTTATTACAAATGAA
CCTAGGAGAAGCGATCCGAAAGCCGGGTTACTCTTCAACTACTCTTCCCC
TTTTGAACAAATTAATATACTCCATTTTAGATTTCCAAGCAAATTTATAA
CCCACTTCGGTTGTTAGTTACTCCACTTcatgtcattttttttaaattga
ttgaCTGTTTTCATTATTAGGGTAAAAATTGGTTTGGCGACAGACAGGAT
CGTGTTACTGATGGTTTGATTGCTGTCTTATTATCCTTGCGAAAGAAACC
AATCATAAGATATCAAACAGCCTCGTCAATGTGCAAGCGACTGGCTGAAA
GTGTTATGGTATAACGTTTAAAAATTGCATGCTCCCCCTCCCTAATATGA
AGCTTTATCTAagtacacaggttgcaaaattaaagtctgaagtcgtgaag
acaaatcacgcttttactcgaaatttttatgtgcttgttacatgacattt
atttctgattggttcaaatttaTTGACAGTGATAAAGTTATCaactgtaa
gttgtaaagcaagtaacgtaagtaaaatcacgtgaacttNTAACTTTGTT
TAAATTGCATGCTTTTGTTTGCATGTACATTCAACTCTCCCCTCCCTAAT
CTGAACCTGTATCTAAATACACAGGTTGCCAAATTAAGGTCTGACAAGTc
gtgaagacaaatcacgcttttactcgaaaattttatgtgcttgttacatg
acgttcatttctgattggttcgaatttatagacagtaataaagttatcag
ctgtaagttgtaaagcaagtaacatgggaataaaatcacgcgAACTTTTT
CGATTAATCACATGCTTTGACCGCACttatataattttgcaacctgtgta
ttccGCCATTCGAACTAGTAAAGTCCCCTCAGTGAGGTGGAAAGTCGTTT
AATATACTCCTTGTAGTTCaattttttctctaattcgaataaaattaTTG
GTCCCTTGCAGATCGGATTAGAGGGTTTCAACTGTACAATCAACTTTCGG
TTATTCGCACTTGGAACGAGAAATATGAATTAATCGAACTGCAGAGAGAT
TTGGGCTTTATAAAGTATCCAACGAGAGTTTCCCTTAGCCTGGTTTCCCT
TTGGTTGAAACTGGGAGTTAGAGGATCGTAGAAAAATTCGAATgcgaaaa
gtttaaaaaagctCCACTGCGTCTACCTTAACATAGATATCCACATATGT
ATAATTTTTTAGGTCATAAAAATTCTAATCTAATTATGTTTTTTAAGTAC
GTCttcaagttaaaatttaaagaataaacatatcattttgaatttgtttt
gatgAAACATTGTCCCTACCTTCAACTGTTCCTACTTAATTCTGAATATT
TGATGTTGTTATATTTTAATACATATAACTtgaagacttttttcttttca
tattaCAGTTGAAAATGGGTCAAGAATCGGGATTATTTGAATTCCGGCAA
TCAGATATTTCGCCACTGTTATTGATTGTCGATCGGTCGGATGACCCTGT
CACTCCACTGTTAAATCAGGTATTTATTGATCATTATTTTTAGAGACCTT
CTTGAAGAGTTCTTTAGCCGCAGTGGCTTATACAACCTAAGGGGTTAATG
AATCAATGGGGAGGAGAGGTGTCCGTCCTTGAGAGGTTTTCATCTTCTGG
ATAAAAAACTTTACTTTCTGTGACAAGCTTAACTAACTTACTGATTTTCA
AggtcaaaactttgttttaccAGTTAACTGCACTGACCATTTCTGACCAG
TACCCCTCACCGGCCCCCATTATAATTTCTTATTAGCAAAAGGGTTCTTA
CATcaactttttttacactttttatttttagtggACTTATCAAGCGATGG
TTCATGAGTTATTAAGTATCAAGAACAACCGTATTGATTTATCCAAAGTT
CCTGGCATCTCAAGAGAACTAAAAGtaagcaaaaatttaacttttgaaaa
tttagtgCTCTTTTTCATCTGTTTCTTTTGATTCTAATGTAGAAAGGAAG
TATTTGATTCCTTCCGCAGTTTAAATAGTGTATTTCAAAGCTCTCACTGT
CTCAGTCATATATACATATCTTTTCCTACTCAAAATCATGCATAATTCAc
cgaaatttcaagaatatgtgctTAATATTTGCTTTTTAAAATATGTATGT
ATTTTCTAACTCGGGCACCCgaaaaaagccggattttgacCACTCGCACT
GTGTTTCTGTATTTAGAAATAGACAGTGGTTGAATCCCGGCTTCTTTCGG
AATGTTTCCGTTAgcaaaaatgacttacgcacaTCAAGAATGCCAGCACT
TCAGAAGAGGCTTTCTATTAATATTCACGGTTCCATTGCTATTTTGAACT
GAATGCAGGAACCAAGAAccggttttttggacctacctcgaaggtccttt
aaattaacctatgttcgtccgttcgtccgtccgttcgttcgttcgtctgt
tcgttcgtctgttaccagcttttctcgggaatGGATaattagtttttctg
attttttgcacattgaTGCCCAAAAAGGAGTAAGTAAGtaaggagcccga
ttttcgaaaaaaaaaattttccagccaaaaatgccggaaatatgccgaaa
aaactgtttttttgcattttctcgagatttcgtcattagttttttctgat
ttttttgcacaaagatgcgtattagctataccccggtggaggtcctataa
attaacccatgtccgttcgttcgttcgttcgttcgttcgttcgttcgttc
gttcgttcgttcgttcgttcgttcgttcgtttgcacaaagatgcataact
ataaaccctcaaatgtgagggagcccgactttcgaaaaaaaaattttttg
ggaaattttggccaaaaaaaacggctaaaaaacgggtttttttggacttg
ggcTCAAAaagcgcatgtttatctataagaatcactattaataagcatac
atcaatgttcttagccaaattactcaattttttgatgagatagatgtttt
tttNNNNNNAGTCTTGAATaggaaagaatatttcaagagcatgaaatttt
ggtttctaaacgtttttttataagaaacaaacgactaattttaatagatc
gtcactatttgtgttctgaatgattgtttaattgTCATGCtaacgtagat
atcaattatatatgtgtttaaTGCAtgaccaggtaggtccataaaagtat
aaCTTGTTTTCAcacaaaataattattgataacaatgcccaccatcaagc
gtgattcaattgtcaataaaactgatctTTGCAACCGGtgatttctattt
cttttttccttcaACCCTTCCCTCCCCCCATCAACGATCAATgatgtaat
ttaatgcgttatgcattttcgctaaacgctatattttctgaccgatagtt
ttcatttttctcctcgtattgctatctaactttcatcatctggtaggtcc
attcagcatctagcttgttatgATGGTATTGTCAGCTTCGAACACTCTTC
CATTGCTAAACGTTGGTCAATTTTCTTTCACAGGAAGTTGTTTTATCAGC
AGAGCACGATGATGTCTACCTGGACAATATGTATAAAAATTTCGGTGAAA
TTGGTATCAATATAAAACAATTAATGAATGAGTTTCAGAAGAATGCAAAA
AGTAATCAAAAGCTTGACTCAGTTGCTGATATGAAGGTATGCGTTATGTg
ctttaaacattttttatttaagGATAAGCTATAAAATCTGTTTACACAAA
TTTGAATCAGAACAGAGCCCCACCTATTTCAAAGCCCCGAAGAGGCTAGA
TCTGAAACCCTTGTATAGGAAAtaaagctacttatttcccatctaaatAA
AACGCATGACTCACGGAGGATGGACCCACGCGGTTTTTACACTAATGCca
aattgaaagtaaaatccatcgccagattttgaaaaaaaattccccaGGGA
AATGACAAAGAAATGActagattcaatccatcatTCTAAATGCGGCGCAA
ATCCTAAGGCTCCACTGTTTCTTGCTCGataaaggttgaagattcctctc
tagctcCTTCGGGGTATGCCTTCGAGTGGGAGTGAGTGGGAGTGGAGAGT
GAGTGGGGAGTGGAGAGTGAGTGGGGAGTGGAGAGTGAGTGGGGAGTGGA
GAGTGAGTGGGGAGTGGAGAGTGAGTGGGGAGTGGAGAGTGAGTGGGGAG
TGGAGAGTGAGTGGGGAGTGGAGAGTGAGTGGGGAGTGGAGAGTGAGTGG
AGGATGGAGAGTGAGTGGGGAATGGAGAGTGAGTGGGGAGTGGAGAGTGA
GTGGGGAGTGGAGAGTGAGTGGGGAGTGGAGAGTGAGTGGGGAATGGAGA
GTGAGTGGAGGGAGTGATTTTTAAACAAGATGTAAATGCAGTGTACGTTG
AGTTGGATGTCGAGTTTAGAGTTTAGAGTTTAAACCTGGCACAAAGTGTA
AGTGCAATATGAACTCTAGCTTTCCATCTTATACTCTGAAAAGATTGGTT
TTCGGTGTTCTCTATTATCAATAGCTGAGTATGACAAAGGGAGGACAAAG
GTGGTCTTTCTTAAGTCATTAAGTAGGGGAGGTAGAGGTGACACCTTTAA
ATAAATCGAAGATTTAATTTTCCTGAAAAGGAGAGATTAGCAAGGAGGGG
ATAGCTCGAATGGCACAAAAAAACAATTGTATTTCTTAAGGATAGATAGG
GAGTTTGCCAAATGCGGGGATAATTTAAGAAAGGGTTAGACCCCTTTTTC
GCGTTACGGCCAATAAAAATGTACAGATGTAATGAACCGTTTGACGGGTT
CTAAAAACTAGTTCggattaaagaaagattcgaataatagacgctcgaat
tagagaatctatattgtattttttattttaggcgTTCGTAGAGAATTATC
CACAATTTCGTAAGATGTCTGGCACAGTCTCAAAACATGTGACTGTAGTG
AGCGAATTATCACGTTTAGTTGGTGAACACTGTTTGTTGGAGCTGTCCGA
ACTCGAACAAGACATGTCCGCTAAATCAGATCACTCCATGCATTTACAGG
TAAGTTAATTATCAACCCCCATGGAGGCTCTTACGAAGAAAATTACTCTC
CaagaaaatcagagaaaatgtGATGGAAGAAGATGGAAGATGAATTTCCC
TGATCACTTTTTTTAACCCTAGACACGTATTTTCTTGATAAAGCATCAAA
CCCCTCTGGATATTAAAAGTTACCCCCCGGGAACTTTCACCTTTTTAAAG
TGTTTATCATTTTCAACCCGGTAAGGGAAGGTTGGGTTTTTATGGTAGAA
GTGGAATTTCTGCAGATTTGGACTGATTGTAACGAAAATCCGCAAAAGAA
TAACTCTAAGTTGTCAACAAGTTGTCTACTGCATCACTACAACGACCTTT
TACCCGTCTTTCTATTTTGTTGAATGACACAGGACGCTCTAATGTTCATT
TTCGCAACTagagacgctttcaatgagcgttCTGCTAGTACTTCAGACTG
ACTACCTTTTTCCTTTcacattaccgagtttatgtatgtgtgtttttcag
cgacggagacggtaaggttctaatttgactagatcctgaccagctgagga
cgacggtaaatcagcacttttaccgtcaccgtcctcgattttgcggggcg
gaattgcgggtttttccaaatcgcttcagtcaccctaccgtcctcaaaag
tgcaaatacataaactcggtattgtgTCAGTTGCCCCGGGAAAATGTTCG
TTCACTTGCCTAGTGAACCGCTTCGAGTTGGAATGGAATCTCAGTCGCCT
GTGCGGGAACCAACGTCAATGACCACTATGCAACACCTTTCCCTTGGACA
AGTTTTTGCTTGTTTAATTCccattaaatttatttttttcgtttaAATCA
CGAAGGCGATAAAGAAACTGTTGGCGAATCCAAAAGTACGAGATATAGAC
GCTGTCCGATTAGTTCTACTGTATATCTTACGTTACGAGAAAACGCAAGG
CAACGACGCCGGTGGTTTACGTAACGATTTGAAGAAACGCGGCGTCAGCG
ATACTATGTGTAAGGTAATGTGCATGTAATAGACTCGATGCTTACATATT
ATAGATCTTGTTGGGTTTTAATCATTTTGTAGGGTCTTTTTTGTTGAACT
CTAGAACCATGGAGAAGTTTTACTGCAACCTAGTCTAgcattatcatata
acacctatattataacacctatattactgtattacacggataTAGACTTT
CATAAAGCATTGTTTTTCGAGTTGAATCTTTCGAAGCTGTACGGAGTGCT
TTCTCTGCAACCCTAGACCATCACCCCATTGAAAAAGATTAACTAAGATT
TACCTTAAATTTTATCCTCATAGAAAAAGTCTTATCAGTGAAAACTCTCT
TACCCGCGTATCAAAAAGTTACGTGAATGAGAATTCATACTGGATTTCTG
AGCTCTAAACAATAGAAACTAAAATTCTCATCCTTTATATGCAGATGATT
TCTAATCTCGTTTGCAAAAAATCTTCATTGGGATTTAGAAACTGACTTTG
TCTTTAAGTACTGTTcacgattttattttttttaaccaTGGAATTGATAC
TTTTTCTTCTAGATTGTTTACAACATGGTAGAATATGCTGGCGCAACTGT
CCGAACCAGTGACATTTTCGGACAAAACAAAAACGCTCTTTCTATGACCA
AAAAATTCATGAAAGGACTGAAGGTATTTAcataaatttttctttgagat
tttaagcttgtgtggtcgtgttacaaaaatacaggctgattgtagggaaa
aaaataatgatctagctgaaactttctccagaccttggATATAACACatg
atgcttatacctcaggaaaaaatcccctaagaTCCCATTGGTGGAACATc
tcttttttgggcaatttttattttccccaggcaaaaccttaagggcgaaa
ttttttgaacatttcaaacttattttcagacaatatcatgtataccattc
gaaagctctaaCGGTTATAGCCGGTTTCCTTACCTCTGAAATTGACCATA
AATTGCTTCTTCAGCGTGAATtaactttaaaagtttaaaagtcttctata
aattttttttttgagaactttcgaatggtatacatgatattgtctgaaaa
tgagtttgaaatttgtgTTAACGCAATTATGCGTCCTAACAGcaaccttg
gactgactacccgaTTCCCTTCACCTCCCCGCACCGCGAGTGGAAATCGA
TCCTTGGTCTCCCTTACAGGATTCAAGGTATATCATGACGCCTCGTTCTC
CTTCAACTCTGGTTCAAGtcattagaaaataaaaatcttcatcATTTTCC
ATTCCAGGGCGTCGAAAATATTTACACACAACACAAACCATTACTTCATG
AGACGCTGGATAACTTGATTAAAGGAAAATTACCCGATCGCTTATTCCCA
TACCTTGGAAAAGATACTTTCAGAGATAGGTAANGAAATTACCTGATCGC
TTATTCCCATACCTTGGAAAAGATACTTTTAGAGACAGGTAAGCTGGTAG
TTTTCTATTTAGGAAGTATATTatagaggtctgcaattcagactaATAGT
TTTTCAACTGGGTTTGACATAAGGGTTTAACCTTGCAAGGTTTAGAAGAC
ATTATATCAACGAAGGTTTTTCTAAAGGCGAAAAAAGATTTCGTCACGCA
ATTTCGCAAAATTAAGAATTTCCTTCGTTCATCTCAAAAATGTTATTTat
ctttttgattcttttgattttcagacCTCAAGATGTCGTTGTTTTCATGG
TGGGAGGTGCAACATATGAGGAGGCTCTTACCGTATACGAACTGAACCGG
GCTAACCCTGGTGTCCGCATCATTTTGGGCGGTACTTCAATTCATAATAC
GGAAAGGTAAGAAACGACTGTCATTTtcggaaaatattttcaaatttgtt
tattttgcttaGGATGTAATTAAGACAAAGTTGGATTTTAATTTTCGAAC
CCGTATCTTTGAACTACGGTGGAGTctcaactcgaacctctataactcgg
atgtctctttaactcgaacaagttttaaggTCCTttaagttaacaatgcc
ttataaaaacattactctagaactcgaacaaatttttgtcccctgtgcgt
gttcgagttgtAGTGACTCCGCTGTACTATCAATTGTCTCTAAAGCGCTC
TAAAGGGGGTATTATTTAGAACAGCTCATCAAAAGGGTGATCTGAAAACT
CACGATTTTTTGCAAGTAATCATCGATAGATAAAAGATAATAGGATGTGT
TGGGTGGCTCCAAttatattttcatcaaaatttattcttCGGCAAAGGAA
TTTCCGTCAAATTAGTTCCCTTGAGGTATGAAAGATTTAAAACTCGAACC
TCTTTGTTCACTTtgtggctctgggtacgagattggatgcttttttcata
ttttatttatattttcagctttttagaGGAAATCAAAGAGAGCACTATGA
TCACCGatacgatgacgtcatcgacgaGTGTCGCTTATTCCAAATCGTCA
AGATATGAAGTATAGTTGTAAGGTAaaggtaataataataataataatct
aCTGAATACAAAGGTATCAATGGTATTGGCCCAACAGacttataaagccc
gaagggctggaTGTTGTGCCTTAAGCCATCGCATGCTAAAAAAATCGaat
attggaaaaaaatcaaatattggagaaaaaaaatattactattgttttca
aaaacccgcgaagcttctaaTTGGTCAAGCGTTGAAATTCTAtagtaatg
tcacgtgacctaggtaggaaatcctacctaaccacggcaaaATTTTCAGC
CGAAGCACGACATTTAgcacttcgggctttataaatctatgattgTTTGC
ATGTCGTGAACGCGGGCGGTGAAAAGTGGGCGTTACTTATCAAGATAAAC
TATTTCAATTCGTTGCATACACAATGGTACTGTAGACTTGTCGAATATTA
TTGATGCTTAACTGTAGGGTTTTGGTGAACCCTAATGTCCACTTAATGTG
TGGGCACTGGGCTGGTTAGACTATAATGGGTTTTTTCTTAAAATGTTGTA
AATTTAGTTCTGTTCAATTTTACCGGGTGTGCCACAAATAAGTAACCCTC
TTTGATTTGATATTGTAGGCAGTAGAAAAGAGATTAGCCTTTTTTtgaca
tatttttaaattgacattttaggtttttgaacataacttttgaaccaatg
aagtaaaattaaaaagtaatacaccaaattttaagttaggctttcatctg
aatgattccgaaacaatctttgaaaaatctcttttctactgcctacaata
tcaaatcaaagagggtaacttattgtggcacacccggtagttTTTCAATT
ACTcgctttttttgtaagaatggtGTATTTCTATTACATTGAACTATCGT
TATGTTAGGTTAAAATTTAGCCTaaaattggcatttttaggTTCAGTTGG
CAAATTTTATGATAGTaatattgaatatatttttcctatattctttattt
tttggccaaattaTCATGAATATTCTCATAGAGTatattctttataaaaa
aacgtgcattcTTTACGTGTGCATATTTTTTAAAGTCTTCTAGCTGTAAT
TCTAGTTCTCCTAataattatttgaaactttctacaatttatacaccttt
ttgatcgtagtcgcgcggtcaggcgcgtgccactttattatttaatttac
caccctaaactcgatccaatcctgtTTTTGGCACCTTTTTCCATTgtcta
ttcttgatatgcgtaagtcaagatggcGTCATATTTTCAacggaagcacc
cgaaaaaAACCGGATTTTGACcaccgtgtttctatttttagtaacagaga
ggggtCAAATCCCGGATTTTTTCGAGTGTTttcgctagaaaaatgactta
cacATGTCAAGAATAGgttcgaaaaaaagactggaacGGTTTTTGGGTGG
TAAAACGGAGAAAAGGgtctacggtcgaaaaggtgtattcattAAAATAA
TACCTTTATGTTTACATatgcttaaccctttaagtgccaatgtcgtatat
atcagacatggactatgtaggagggcgaagccctcctgtaaagCCCAGTT
TGAGTTGGAAATCGTCATtattggtctaactcgtagaaATCGGATCGGGC
TTCATGGccaagcaaaaaaatcaaaagtgagtcttttcagcgagatttta
agctaaaaagtaaaaaaaatgcaaatatttgacaaaaatccactttttta
agattttaaccgttttttatcatttttggtcaacgagtgatccaataacc
tccaaatttggccctgattaacttgattctgtcctccagcgaattagttt
gaagttttaccactcggCGCCTTCctatcattcagtcaggtccgcgcagc
gaaggcgcctaaaagaaagaggatacaataaacgagcttctaactccttc
tagatccggtaagcctttaaagttcgaactagcgattttctttaaaaaac
ttagaaaaaaatgaccgtggcacttaaagggttaaagaaaaattgcaaaa
atcattttttttctaaaattttcatttttttaaaatcactcaaaaaggc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003505XLOC_003505Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006141-exon-sc0000063-1491911889:507128..507245TCONS_00006141-exon-sc0000063-1491911889:507128..507245Clytia hemisphaericaexon
TCONS_00006141-exon-sc0000063-1510915933:507128..507245TCONS_00006141-exon-sc0000063-1510915933:507128..507245Clytia hemisphaericaexon
TCONS_00006141-exon-sc0000063-1575043694:507128..507245TCONS_00006141-exon-sc0000063-1575043694:507128..507245Clytia hemisphaericaexon
TCONS_00006141-exon-sc0000063-1491911889:507747..507881TCONS_00006141-exon-sc0000063-1491911889:507747..507881Clytia hemisphaericaexon
TCONS_00006141-exon-sc0000063-1510915933:507747..507881TCONS_00006141-exon-sc0000063-1510915933:507747..507881Clytia hemisphaericaexon
TCONS_00006141-exon-sc0000063-1575043694:507747..507881TCONS_00006141-exon-sc0000063-1575043694:507747..507881Clytia hemisphaericaexon
TCONS_00006141-exon-sc0000063-1491911889:508316..508376TCONS_00006141-exon-sc0000063-1491911889:508316..508376Clytia hemisphaericaexon
TCONS_00006141-exon-sc0000063-1510915933:508316..508376TCONS_00006141-exon-sc0000063-1510915933:508316..508376Clytia hemisphaericaexon
TCONS_00006141-exon-sc0000063-1575043694:508316..508376TCONS_00006141-exon-sc0000063-1575043694:508316..508376Clytia hemisphaericaexon
TCONS_00006141-exon-sc0000063-1491911889:508742..508821TCONS_00006141-exon-sc0000063-1491911889:508742..508821Clytia hemisphaericaexon
TCONS_00006141-exon-sc0000063-1510915933:508742..508821TCONS_00006141-exon-sc0000063-1510915933:508742..508821Clytia hemisphaericaexon
TCONS_00006141-exon-sc0000063-1575043694:508742..508821TCONS_00006141-exon-sc0000063-1575043694:508742..508821Clytia hemisphaericaexon
TCONS_00006141-exon-sc0000063-1491911889:509386..509454TCONS_00006141-exon-sc0000063-1491911889:509386..509454Clytia hemisphaericaexon
TCONS_00006141-exon-sc0000063-1510915933:509386..509454TCONS_00006141-exon-sc0000063-1510915933:509386..509454Clytia hemisphaericaexon
TCONS_00006141-exon-sc0000063-1575043694:509386..509454TCONS_00006141-exon-sc0000063-1575043694:509386..509454Clytia hemisphaericaexon
TCONS_00006141-exon-sc0000063-1491911889:510098..510235TCONS_00006141-exon-sc0000063-1491911889:510098..510235Clytia hemisphaericaexon
TCONS_00006141-exon-sc0000063-1510915933:510098..510235TCONS_00006141-exon-sc0000063-1510915933:510098..510235Clytia hemisphaericaexon
TCONS_00006141-exon-sc0000063-1575043694:510098..510235TCONS_00006141-exon-sc0000063-1575043694:510098..510235Clytia hemisphaericaexon
TCONS_00006141-exon-sc0000063-1491911889:511336..511446TCONS_00006141-exon-sc0000063-1491911889:511336..511446Clytia hemisphaericaexon
TCONS_00006141-exon-sc0000063-1510915933:511336..511446TCONS_00006141-exon-sc0000063-1510915933:511336..511446Clytia hemisphaericaexon
TCONS_00006141-exon-sc0000063-1575043694:511336..511446TCONS_00006141-exon-sc0000063-1575043694:511336..511446Clytia hemisphaericaexon
TCONS_00006141-exon-sc0000063-1491911889:511759..511851TCONS_00006141-exon-sc0000063-1491911889:511759..511851Clytia hemisphaericaexon
TCONS_00006141-exon-sc0000063-1510915933:511759..511851TCONS_00006141-exon-sc0000063-1510915933:511759..511851Clytia hemisphaericaexon
TCONS_00006141-exon-sc0000063-1575043694:511759..511851TCONS_00006141-exon-sc0000063-1575043694:511759..511851Clytia hemisphaericaexon
TCONS_00006141-exon-sc0000063-1491911889:513461..513613TCONS_00006141-exon-sc0000063-1491911889:513461..513613Clytia hemisphaericaexon
TCONS_00006141-exon-sc0000063-1510915933:513461..513613TCONS_00006141-exon-sc0000063-1510915933:513461..513613Clytia hemisphaericaexon
TCONS_00006141-exon-sc0000063-1575043694:513461..513613TCONS_00006141-exon-sc0000063-1575043694:513461..513613Clytia hemisphaericaexon
TCONS_00006141-exon-sc0000063-1491911889:514809..514976TCONS_00006141-exon-sc0000063-1491911889:514809..514976Clytia hemisphaericaexon
TCONS_00006141-exon-sc0000063-1510915933:514809..514976TCONS_00006141-exon-sc0000063-1510915933:514809..514976Clytia hemisphaericaexon
TCONS_00006141-exon-sc0000063-1575043694:514809..514976TCONS_00006141-exon-sc0000063-1575043694:514809..514976Clytia hemisphaericaexon
TCONS_00006141-exon-sc0000063-1491911889:515833..515991TCONS_00006141-exon-sc0000063-1491911889:515833..515991Clytia hemisphaericaexon
TCONS_00006141-exon-sc0000063-1510915933:515833..515991TCONS_00006141-exon-sc0000063-1510915933:515833..515991Clytia hemisphaericaexon
TCONS_00006141-exon-sc0000063-1575043694:515833..515991TCONS_00006141-exon-sc0000063-1575043694:515833..515991Clytia hemisphaericaexon
TCONS_00006141-exon-sc0000063-1491911889:516540..516650TCONS_00006141-exon-sc0000063-1491911889:516540..516650Clytia hemisphaericaexon
TCONS_00006141-exon-sc0000063-1510915933:516540..516650TCONS_00006141-exon-sc0000063-1510915933:516540..516650Clytia hemisphaericaexon
TCONS_00006141-exon-sc0000063-1575043694:516540..516650TCONS_00006141-exon-sc0000063-1575043694:516540..516650Clytia hemisphaericaexon
TCONS_00006141-exon-sc0000063-1491911889:517285..517406TCONS_00006141-exon-sc0000063-1491911889:517285..517406Clytia hemisphaericaexon
TCONS_00006141-exon-sc0000063-1510915933:517285..517406TCONS_00006141-exon-sc0000063-1510915933:517285..517406Clytia hemisphaericaexon
TCONS_00006141-exon-sc0000063-1575043694:517285..517406TCONS_00006141-exon-sc0000063-1575043694:517285..517406Clytia hemisphaericaexon
TCONS_00006141-exon-sc0000063-1491911889:517702..517833TCONS_00006141-exon-sc0000063-1491911889:517702..517833Clytia hemisphaericaexon
TCONS_00006141-exon-sc0000063-1510915933:517702..517833TCONS_00006141-exon-sc0000063-1510915933:517702..517833Clytia hemisphaericaexon
TCONS_00006141-exon-sc0000063-1575043694:517702..517833TCONS_00006141-exon-sc0000063-1575043694:517702..517833Clytia hemisphaericaexon
TCONS_00006141-exon-sc0000063-1491911889:518396..520576TCONS_00006141-exon-sc0000063-1491911889:518396..520576Clytia hemisphaericaexon
TCONS_00006141-exon-sc0000063-1510915933:518396..520576TCONS_00006141-exon-sc0000063-1510915933:518396..520576Clytia hemisphaericaexon
TCONS_00006141-exon-sc0000063-1575043694:518396..520576TCONS_00006141-exon-sc0000063-1575043694:518396..520576Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000063supercontigsc0000063:507128..520576 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.70098	1.94984	1.45229	1.01269	0.823243	1.39455	1.24345	2.70733	4.81467e-08	0.928041	0.0159209	1.84987	0.511454	0.979696	2.61739	3.34461	4.49187	3.37507	2.0168	2.62831	4.43776	4.07667	3.32926	3.4827	0	0	3.98892	2.80569	3.94338	3.2884
Blast
[Close]
BLAST of TCONS_00006141 vs. Swiss-Prot (Human)
Match: VPS45 (Vacuolar protein sorting-associated protein 45 OS=Homo sapiens GN=VPS45 PE=1 SV=1)

HSP 1 Score: 756.518 bits (1952), Expect = 0.000e+0
Identity = 362/548 (66.06%), Postives = 449/548 (81.93%), Query Frame = 2 
Query:   26 MNVIVAVKQYITKMIDDAGPGMKVLLMDKETTGIVSMVYAQSEILQKEVFLFERVDTQARETMKHLKAICFVRPTKENIEALKKELKIPKYGSYYIYFSNAILKNYVKQLAESDDQEVVKEVHEFYADFFAISPHVFSLNIVGCAKGKNWFGDRQDRVTDGLIAVLLSLRKKPIIRYQTASSMCKRLAESVMLKMGQESGLFEFRQSDISPLLLIVDRSDDPVTPLLNQWTYQAMVHELLSIKNNRIDLSKVPGISRELKEVVLSAEHDDVYLDNMYKNFGEIGINIKQLMNEF-QKNAKSNQKLDSVADMKAFVENYPQFRKMSGTVSKHVTVVSELSRLVGEHCLLELSELEQDMSAKSDHSMHLQAIKKLLANPKVRDIDAVRLVLLYILRYEKTQGNDAGGLRNDLKKRGVSDTMCKIVYNMVEYAGATVRTSDIFGQNKNALSMTKKFMKGLKGVENIYTQHKPLLHETLDNLIKGKLPDRLFPYLGKDTFRDRPQDVVVFMVGGATYEEALTVYELNRANPGVRIILGGTSIHNTESFLEEI 1666
            MNV+ AVKQYI+KMI+D+GPGMKVLLMDKETTGIVSMVY QSEILQKEV+LFER+D+Q RE MKHLKAICF+RPTKEN++ + +EL+ PKY  Y+IYFSN I K+ VK LAE+D+QEVV EV EFY D+ A++PH+FSLNI+GC +G+NW   +  R T GL A+LLSL+K P+IRYQ +S   KRLAE V   + +E  LFEFR++++ PLLLI+DR DD +TPLLNQWTYQAMVHELL I NNRIDLS+VPGIS++L+EVVLSAE+D+ Y +NMY NF EIG NIK LM +F +K  K  QKL+S+ADMKAFVENYPQF+KMSGTVSKHVTVV ELSRLV E  LLE+SE+EQ+++ ++DHS  LQ IK+LL NPKV + DA RLV+LY L YE+   N   GL  DL+ +GVS+   K+V  +VEY G  VR SD+F   K+A+++TK+F+KGLKGVEN+YTQH+P LHETLD+LIKG+L + L+PYLG  T RDRPQD++VF++GGATYEEALTVY LNR  PGVRI+LGGT++HNT+SFLEE+
Sbjct:    1 MNVVFAVKQYISKMIEDSGPGMKVLLMDKETTGIVSMVYTQSEILQKEVYLFERIDSQNREIMKHLKAICFLRPTKENVDYIIQELRRPKYTIYFIYFSNVISKSDVKSLAEADEQEVVAEVQEFYGDYIAVNPHLFSLNILGCCQGRNWDPAQLSRTTQGLTALLLSLKKCPMIRYQLSSEAAKRLAECVKQVITKEYELFEFRRTEVPPLLLILDRCDDAITPLLNQWTYQAMVHELLGINNNRIDLSRVPGISKDLREVVLSAENDEFYANNMYLNFAEIGSNIKNLMEDFQKKKPKEQQKLESIADMKAFVENYPQFKKMSGTVSKHVTVVGELSRLVSERNLLEVSEVEQELACQNDHSSALQNIKRLLQNPKVTEFDAARLVMLYALHYERHSSNSLPGLMMDLRNKGVSEKYRKLVSAVVEYGGKRVRGSDLFSP-KDAVAITKQFLKGLKGVENVYTQHQPFLHETLDHLIKGRLKENLYPYLGPSTLRDRPQDIIVFVIGGATYEEALTVYNLNRTTPGVRIVLGGTTVHNTKSFLEEV 547
The following BLAST results are available for this feature:
BLAST of TCONS_00006141 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
VPS450.000e+066.06Vacuolar protein sorting-associated protein 45 OS=... [more]
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