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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006138 ID=TCONS_00006138|Name=TCONS_00006138|organism=Clytia hemisphaerica|type=transcript|length=614bp
AGAATAATTTGCAATGGGAATGAAGTTGGTCCTGAGTACAAAATTATATA
CTttattctattgtttaatttgcCCATTATTTCGTATACAGCATGCTGAA
GATGTGAAGAGAGTCTTAAGTCAAGATAAAATATCACGTTTGAAAGAACT
GCGCGACCAACAACTCGAGGAGAGGATACAAGAACACGCAAAACACATTC
GTGAGTGGAGACAGAAGAATCGGCTGGATAAAATGGAAACTGACCTAGAA
GTGGCAaaacaaaatcttgaaaagGCGCTGAATCTACAACGTGACTTAGA
AGAGAAACGTGCTTTGCAGTACCGCTTGCGTGCATTTACTGCCGAAGAAT
TTTCACCTCCCAATCACGGAAAACCAAAATAATATCAATTaattattaaa
tttcaaaatgttcctattttttgaaaattatttttataattaatGTAAAT
AGAATACAGAGTTTTATCTTTACAAGAATAAGATCAGTTTTATTTATCTT
ATTGAACATTTCCGTTTCGTTTTTGGCTAATTTTGTGAATCGTTGGGAGA
GAGTGGAATTTAGCCTGTGGAATTAcgtttttggacaattttttggAAGG
AAAATCATGTCCGC Run BLAST on NCBI protein sequence of TCONS_00006138-protein >TCONS_00006138-protein ID=TCONS_00006138-protein|Name=TCONS_00006138-protein|organism=Clytia hemisphaerica|type=polypeptide|length=122bp
MGMKLVLSTKLYTLFYCLICPLFRIQHAEDVKRVLSQDKISRLKELRDQQ
LEERIQEHAKHIREWRQKNRLDKMETDLEVAKQNLEKALNLQRDLEEKRA
LQYRLRAFTAEEFSPPNHGKPK Run BLAST on NCBI transcript from alignment at sc0000063:499809..501094+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006138 ID=TCONS_00006138|Name=TCONS_00006138|organism=Clytia hemisphaerica|type=transcript|length=1286bp|location=Sequence derived from alignment at sc0000063:499809..501094+ (Clytia hemisphaerica)
AGAATAATTTGCAATGGGAATGAAGTTGGTCCTGAGTACAAAATTATATA
CTttattctattgtttaatttgcCCATTATTTCGTATACAGCATGCTGAA
GATGTGAAGAGAGTCTTAAGTCAAGATAAAATATCACGTTTGAAAGAACT
GCGCGACCAACAACTCGAGGAGAGGATACAAGAACACGCAAAACACATTC
GTGAGTGGAGACAGAAGAATCGGCTGGATAAAATGGAAACTGACCTAGAA
GTGGCAaaacaaaatcttgaaaagGTATATTTCGCATACGCCGAAGGGGA
ACGTTTTTCTTTATTCGTGATATTatcatgatgtaatgttttgagAGAGT
TGATTGTAGCAAATAACTGTCTTTTTTGGCGGCTTCGTATAAAACTTTAT
GTcgaaaatatcaagaattgtCTATTTCACTGAGTGACCCAGTGAGAGTC
GATCAGAGGATATAAATCGTCACCTTTGAATTGTTGGCTTTGTTTACAAC
TGAAAAATTCACAGTAGAGAATTTCTTGGAATTTGTGTTTCCCATTGTGG
GGTTTAAAGGACagtgttatttttcaaatgatgATGAGATTCAAGGATAA
TTTCTTTCATCTAATCGAAAAAGGTTCGGCCAACAAGGGCCAAATTATGA
TAGTTGATGATCATGTCTCGACTAATACCCTAAGCCTTGACACATTGAAA
CTGCTTTCCATGTGGGTAACTGCTTGGTTTTCAGGCTGGGCCCCATGGGG
ACGGTGCCCTTGTGTTTTTGTCCTACGATAAATTAGTTTTTCATGCCAAA
TTATTATTTAACTATCTACTACCAATCTGGTCCGAAGGGGAGGAGGGTGT
ACATCCCAGATGCcaaaatttgctaaaatttatgaaaagggaCCCTATTA
ATGATTAAGATACAGCATTTAAGAGTCAGCGTTTTTGTCTTCTTAGGCGC
TGAATCTACAACGTGACTTAGAAGAGAAACGTGCTTTGCAGTACCGCTTG
CGTGCATTTACTGCCGAAGAATTTTCACCTCCCAATCACGGAAAACCAAA
ATAATATCAATTaattattaaatttcaaaatgttcctattttttgaaaat
tatttttataattaatGTAAATAGAATACAGAGTTTTATCTTTACAAGAA
TAAGATCAGTTTTATTTATCTTATTGAACATTTCCGTTTCGTTTTTGGCT
AATTTTGTGAATCGTTGGGAGAGAGTGGAATTTAGCCTGTGGAATTAcgt
ttttggacaattttttggAAGGAAAATCATGTCCGC Coding sequence (CDS) from alignment at sc0000063:499809..501094+ >TCONS_00006138 ID=TCONS_00006138|Name=TCONS_00006138|organism=Clytia hemisphaerica|type=CDS|length=738bp|location=Sequence derived from alignment at sc0000063:499809..501094+ (Clytia hemisphaerica)
ATGGGAATGAAGTTGGTCCTGAGTACAAAATTATATACTttattctattg
tttaatttgcCCATTATTTCGTATACAGCATGCTGAAGATGTGAAGAGAG
TCTTAAGTCAAGATAAAATATCACGTTTGAAAGAACTGCGCGACCAACAA
CTCGAGGAGAGGATACAAGAACACGCAAAACACATTCGTGAGTGGAGACA
GAAGAATCGGCTGGATAAAATGGAAACTGACCTAGAAGTGGCAaaacaaa
atcttgaaaagGCGCTGAATCTACAACGTGACTTAGAAGAGAAACGTGCT
TTGCAGTACCGCTTGCGTGCATTTACTGCCGAAGAATTTTCACCTCCCAA
TCACGGAAAACCAAAATAAATGGGAATGAAGTTGGTCCTGAGTACAAAAT
TATATACTttattctattgtttaatttgcCCATTATTTCGTATACAGCAT
GCTGAAGATGTGAAGAGAGTCTTAAGTCAAGATAAAATATCACGTTTGAA
AGAACTGCGCGACCAACAACTCGAGGAGAGGATACAAGAACACGCAAAAC
ACATTCGTGAGTGGAGACAGAAGAATCGGCTGGATAAAATGGAAACTGAC
CTAGAAGTGGCAaaacaaaatcttgaaaagGCGCTGAATCTACAACGTGA
CTTAGAAGAGAAACGTGCTTTGCAGTACCGCTTGCGTGCATTTACTGCCG
AAGAATTTTCACCTCCCAATCACGGAAAACCAAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006138-exon-sc0000063-1491911889:499809..500082 | TCONS_00006138-exon-sc0000063-1491911889:499809..500082 | Clytia hemisphaerica | exon |
| TCONS_00006138-exon-sc0000063-1510915933:499809..500082 | TCONS_00006138-exon-sc0000063-1510915933:499809..500082 | Clytia hemisphaerica | exon |
| TCONS_00006138-exon-sc0000063-1575043694:499809..500082 | TCONS_00006138-exon-sc0000063-1575043694:499809..500082 | Clytia hemisphaerica | exon |
| TCONS_00006138-exon-sc0000063-1491911889:500755..501094 | TCONS_00006138-exon-sc0000063-1491911889:500755..501094 | Clytia hemisphaerica | exon |
| TCONS_00006138-exon-sc0000063-1510915933:500755..501094 | TCONS_00006138-exon-sc0000063-1510915933:500755..501094 | Clytia hemisphaerica | exon |
| TCONS_00006138-exon-sc0000063-1575043694:500755..501094 | TCONS_00006138-exon-sc0000063-1575043694:500755..501094 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000063 | supercontig | sc0000063:499809..501094 + |
Blast
The following BLAST results are available for this feature:
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