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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006133 ID=TCONS_00006133|Name=TCONS_00006133|organism=Clytia hemisphaerica|type=transcript|length=1679bp TTAGCGGTCCAGAGTGACCGACAATCAAGGTAATCACTATCGGAAACCAG TTAGTACCCTAGGCAGCCCTGGTTGATCAGTTTTCTCTATTTGATTTATG ATAAATACGAAGCCCAGAACATATGGTACAAAGCTACAAAACCCAACATG TGAAGCAAAAAGCCCAAAAATATTAGGTCTAAAGCCCCAGAAATAAAAAC Atcacttttgtattttttgacaaacaacttggcgaaaatttttgcaatgc TAGATTTAcagttaaataaaaacaaaaacaaaaaattgctGATGTCCATA ACACACTTTTgtttttagtaaaaaaagtgataaaaatttataaaatctaA TACCGGAAAATCTCTATAATCGAAGGAGCATGTCTGCGCTAACCAACACA TCGGTAGATCCTAAAGGAgcatttcaaagaaacaaaGCTAAACATGGAAA TCTCATCGCTAAAGGTGGACAATATCCACCGGAGGCGGGCCGTTATCATT TGCACATCGCATTGGCGTGCCCATGGGCGGATGGCGTTTTAGCCATGTTG TTTTTGAAAGGCTTAGATCACTTGATCTCGCACTCTATTGTTCATCCCAC GTGGGGTAAAACGAAGCCGGATGATGACGAAGATACTCATTATGGATGGA TGTATAAAAAACcagGTGACGATCCATTGCCCAATCCACTTGGTCATGGT TCAAATGAATGTGACGATGCTTTGATCCCTGATACATTTACAAACGCCAA ATCTGTCCGTGAAGTTTACAATCAATGTGGTGACCATTCAGGCCCCTTCT CCACACCCCTTCTGTATGATAAGGAAACCAAATCGATTGTTTGCAATGAA AGTATGCTTATCTTAAGAATGCTAAATGACGAATTCAATGAGTATGCAAA ACACCCTGAGATTGATTTATATCCAAAAGAGCTTGACGAAGAATTGCAGA ATCTAAATGAAACTTTGGTTTATCCGAAAATCAATAATGGTGTTTACAGA TGCGGCTTTGCGAGGAGTCAAGAAGCATACGCTCAAGCAGTCACAGAGCT TTTTGAGACACTCGAAATCTTAGAAGATCGTTTAAGCAAACAACGGTATT TGGGCAGTTCGACTAAACTCACCTGGCTTGATTTGAGGCTTTTTATGACT CTAGTACGTTTCGATCCTGTATATGTGACATACTTCAAGACCAACAAGAA ACGTCTGGTTGATTATCCGAATCTTCTTGACTTTACCAGAGATGTCTACT CCAATGAGAACATCAAACGGGTGATCAATTTCAAACATATTAAAACTCAT TATTTTACTTCTCACCCTGTTTTCAACACATATGGTATTATACCAATTTA CGACGGCCCGGATTTGGAATTGCAAAGTGGCCGTGAACAAATAGGACATT GAGCCATATTAATCTTTAAACTTTGTTTACCAATAAACGTGGAccgatgt tttttcattttcatcttaaacATTTTTACATTCCAGCACTTTTGTGTGTT ATTCCTTATCGGAATGCAATAGATTTAATTATGGAAGTGGAATTGCATTG ACGTGACTTGTGActtttaagaaataatgaacttaAAAACGTTTACGCGT GTGCTTACTTGGTTTTTCAAAGTAATGATACGATCATCCATGCATTCATT TGTTTTCAACGCACTAACATGTACTAATA Run BLAST on NCBI protein sequence of TCONS_00006133-protein >TCONS_00006133-protein ID=TCONS_00006133-protein|Name=TCONS_00006133-protein|organism=Clytia hemisphaerica|type=polypeptide|length=340bp
MSALTNTSVDPKGAFQRNKAKHGNLIAKGGQYPPEAGRYHLHIALACPWA DGVLAMLFLKGLDHLISHSIVHPTWGKTKPDDDEDTHYGWMYKKPGDDPL PNPLGHGSNECDDALIPDTFTNAKSVREVYNQCGDHSGPFSTPLLYDKET KSIVCNESMLILRMLNDEFNEYAKHPEIDLYPKELDEELQNLNETLVYPK INNGVYRCGFARSQEAYAQAVTELFETLEILEDRLSKQRYLGSSTKLTWL DLRLFMTLVRFDPVYVTYFKTNKKRLVDYPNLLDFTRDVYSNENIKRVIN FKHIKTHYFTSHPVFNTYGIIPIYDGPDLELQSGREQIGH Run BLAST on NCBI transcript from alignment at sc0000063:373958..377374+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006133 ID=TCONS_00006133|Name=TCONS_00006133|organism=Clytia hemisphaerica|type=transcript|length=3417bp|location=Sequence derived from alignment at sc0000063:373958..377374+ (Clytia hemisphaerica) TTAGCGGTCCAGAGTGACCGACAATCAAGGTAATCACTATCGGAAACCAG
TTAGTACCCTAGGCAGCCCTGGTTGATCAGTTTTCTCTATTTGATTTATG
ATAAATACGAAGCCCAGAACATATGGTACAAAGCTACAAAACCCAACATG
TGAAGCAAAAAGCCCAAAAATATTAGGTCTAAAGCCCCAGAAATAAAAAC
Atcacttttgtattttttgacaaacaacttggcgaaaatttttgcaatgc
TAGATTTAcagttaaataaaaacaaaaacaaaaaattgctGATGTCCATA
ACACACTTTTgtttttagtaaaaaaagtgataaaaatttataaaatctaA
TACCGGAAAATCTCTATAATCGAAGGAGCATGTCTGCGCTAACCAACACA
TCGGTAGATCCTAAAGGAgcatttcaaagaaacaaaGCTAAACATGGAAA
TCTCATCGCTAAAGGTAAGAACAATTTTCTGCTTGGATTTGTGGCCGCAG
CATGATGCTCAGCAAGTAAAGAGACGAATCACGgataagtggagaaatcc
agggaaaggagtggcgcccctCCCTACCTTCGGATAGACAGCTGGAGAAA
AGAGAGCTTTCGGGTCTACCTTGACTGCGGTCCCAACTTACTTAGATTTG
CAAGTACGGTCGGAAACCGCTGATAATCAAAACCGAATATCTTGAATAGA
CTTTTTGCTGATTACGATACCTCCATATttctatctaactttcatcgtca
ggtaggtccaatcagcATCCAGCTTATCGTCTATGACACAGGGTGTCAAT
CTATTCATTTTATTCACGCATTATCTAATAAATCAACAAATTTTATAGGT
GGACAATATCCACCGGAGGCGGGCCGTTATCATTTGCACATCGCATTGGC
GTGCCCATGGGCGGATGGCGTTTTAGCCATGTTGTTTTTGAAAGGGTAAG
GTTTGACTATCTTGGTATTTGAAGGTGAAAAAAAGCAAATTATTTAAAGT
TTGAGTTTTTCATTTACGCTAAAGTTTTACTTCTTATTGCTtatctcaat
taatttttttaagaaaaatatttgaggGTATAGATCAAGCCCTATTTTGA
GAAGTCTCAATCTGATTATACTTTTAAAGAAACTCAAACCACCCTTCTTA
CAAATTTTCTACAAATCTTGATTTTTAGCTTAGATCACTTGATCTCGCAC
TCTATTGTTCATCCCACGTGGGGTAAAACGAAGCCGGATGATGACGAAGA
TACTCATTATGGATGGATGTATAAAAAACcaggtttgttttcaagtctTG
AGTagcctattcatgatatgcaccactgcaatgtcttctgacattgcATC
ACGgaaccaacagctgattggttggaagtgacgtaaaatcagtcaatacg
taactttgaaccaatcagctattgggtggaatggaagacattgcaatggt
acatatcatgaatactagACATCGTGTCTCTTTTCTACGCGGTAACGTCA
ATTCCACTTTGCGAATTTTTCGAATGCtccaaactttcaattttttgacg
tcactttacacttttgaagctcttgcagtagcgaaaaaatagaatttacg
tcaaaacacttgaaagacttcttttttcaaaaacggAATAAAAAATGCCG
GTTTTGGTGAGGTACTTGCTATtgatgatatgcaccactggagagttttc
tgagaacttttaaaatcttccacccaatacgtcactaaaacaatagaaaa
agaaaaaaacagaaaagttgcataatttcgtgaagtcattgcagtggtac
ATATCTAATTTTTGCGAGGAGTTATTTTCGCAAATTATGAATGATGTTTT
CGCGCATATTAAAGTTCTTGAATCTCCCTTTTCTTCtcttaatttctttc
attttcctagaggtTTTGGCGAAAATTCGAATCTTCAAATTTCGTGAGGA
CTAATTTTCGGAAAAAGGGCCAATATTTGCGAAAATTGTGAAAGTTAATC
GACGCGAAACTCGACCAACTTAATTTGCCCACGGCTTACAGAAAAAAGGA
AGTAGTCCTGCAGAATTAGGAGGTAAAAACTGTATTGTCCAGGGTTAAAC
TTTGCTGTGTGTAGGAGGTAAAGTTGACGATTTTCCATTGGCGAGGTGTA
TTTAAATGTATATCATTCTACATTCTGCATTTTGAGCTTGACGTCAATCA
GCCAGTCTGAGAGAGAGTATTATGCctgtgaaggtagagagtctttTACC
AGGAATTGAAATGTCTAGCTTATTGAAAAATTAAGCTATCTGACCAACTC
TCGCTAATTTGATCTTTAATGGGGAATTTcatttgttcgaattaaagaaa
gattcaaataatggAAGTTCGAATTATAATCGTGTATATCCTCATCATTA
CAGGTGACGATCCATTGCCCAATCCACTTGGTCATGGTTCAAATGAATGT
GACGATGCTTTGATCCCTGATACATTTACAAACGCCAAATCTGTCCGTGA
AGTTTACAATCAATGTGGTGACCATTCAGGCCCCTTCTCCACACCCCTTC
TGTATGATAAGGAAACCAAATCGATTGTTTGCAATGAAAGTATGCTTATC
TTAAGAATGCTAAATGACGAATTCAATGAGTATGCAAAACACCCTGAGAT
TGATTTATATCCAAAAGAGCTTGACGAAGAATTGCAGAATCTAAATGAAA
CTTTGGTTTATCCGAAAATCAATAATGGTGTTTACAGATGCGGCTTTGCG
AGGAGTCAAGAAGCATACGCTCAAGCAGTCACAGAGCTTTTTGAGACACT
CGAAATCTTAGAAGATCGTTTAAGCAAACAACGGTATTTGGGCAGTTCGA
CTAAACTCACCTGGCTTGATTTGAGGCTTTTTATGACTCTAGTACGTTTC
GATCCTGTATATGTGACATACTTCAAGACCAACAAGAAACGTCTGGTTGA
TTATCCGAATCTTCTTGACTTTACCAGAGATGTCTACTCCAATGAGAACA
TCAAACGGGTGATCAATTTCAAACATATTAAAACTCATTATTTTACTTCT
CACCCTGTTTTCAACACATATGGTATTATACCAATTTACGACGGCCCGGA
TTTGGAATTGCAAAGTGGCCGTGAACAAATAGGACATTGAGCCATATTAA
TCTTTAAACTTTGTTTACCAATAAACGTGGAccgatgttttttcattttc
atcttaaacATTTTTACATTCCAGCACTTTTGTGTGTTATTCCTTATCGG
AATGCAATAGATTTAATTATGGAAGTGGAATTGCATTGACGTGACTTGTG
ActtttaagaaataatgaacttaAAAACGTTTACGCGTGTGCTTACTTGG
TTTTTCAAAGTAATGATACGATCATCCATGCATTCATTTGTTTTCAACGC
ACTAACATGTACTAATA Coding sequence (CDS) from alignment at sc0000063:373958..377374+ >TCONS_00006133 ID=TCONS_00006133|Name=TCONS_00006133|organism=Clytia hemisphaerica|type=CDS|length=4092bp|location=Sequence derived from alignment at sc0000063:373958..377374+ (Clytia hemisphaerica) ATGTCTGCGCTAACCAACACATCGGTAGATCCTAAAGGAgcatttcaaag aaacaaaGCTAAACATGGAAATCTCATCGCTAAAGGTGGACAATATCCAC CGGAGGCGGGCCGTTATCATTTGCACATCGCATTGGCGTGCCCATGGGCG GATGGCGTTTTAGCCATGTTGTTTTTGAAAGGCTTAGATCACTTGATCTC GCACTCTATTGTTCATCCCACGTGGGGTAAAACGAAGCCGGATGATGACG AAGATACTCATTATGGATGGATGTATAAAAAACcagGTGACGATCCATTG CCCAATCCACTTGGTCATGGTTCAAATGAATGTGACGATGCTTTGATCCC TGATACATTTACAAACGCCAAATCTGTCCGTGAAGTTTACAATCAATGTG GTGACCATTCAGGCCCCTTCTCCACACCCCTTCTGTATGATAAGGAAACC AAATCGATTGTTTGCAATGAAAGTATGCTTATCTTAAGAATGCTAAATGA CGAATTCAATGAGTATGCAAAACACCCTGAGATTGATTTATATCCAAAAG AGCTTGACGAAGAATTGCAGAATCTAAATGAAACTTTGGTTTATCCGAAA ATCAATAATGGTGTTTACAGATGCGGCTTTGCGAGGAGTCAAGAAGCATA CGCTCAAGCAGTCACAGAGCTTTTTGAGACACTCGAAATCTTAGAAGATC GTTTAAGCAAACAACGGTATTTGGGCAGTTCGACTAAACTCACCTGGCTT GATTTGAGGCTTTTTATGACTCTAGTACGTTTCGATCCTGTATATGTGAC ATACTTCAAGACCAACAAGAAACGTCTGGTTGATTATCCGAATCTTCTTG ACTTTACCAGAGATGTCTACTCCAATGAGAACATCAAACGGGTGATCAAT TTCAAACATATTAAAACTCATTATTTTACTTCTCACCCTGTTTTCAACAC ATATGGTATTATACCAATTTACGACGGCCCGGATTTGGAATTGCAAAGTG GCCGTGAACAAATAGGACATTGAATGTCTGCGCTAACCAACACATCGGTA GATCCTAAAGGAgcatttcaaagaaacaaaGCTAAACATGGAAATCTCAT CGCTAAAGGTGGACAATATCCACCGGAGGCGGGCCGTTATCATTTGCACA TCGCATTGGCGTGCCCATGGGCGGATGGCGTTTTAGCCATGTTGTTTTTG AAAGGCTTAGATCACTTGATCTCGCACTCTATTGTTCATCCCACGTGGGG TAAAACGAAGCCGGATGATGACGAAGATACTCATTATGGATGGATGTATA AAAAACcagGTGACGATCCATTGCCCAATCCACTTGGTCATGGTTCAAAT GAATGTGACGATGCTTTGATCCCTGATACATTTACAAACGCCAAATCTGT CCGTGAAGTTTACAATCAATGTGGTGACCATTCAGGCCCCTTCTCCACAC CCCTTCTGTATGATAAGGAAACCAAATCGATTGTTTGCAATGAAAGTATG CTTATCTTAAGAATGCTAAATGACGAATTCAATGAGTATGCAAAACACCC TGAGATTGATTTATATCCAAAAGAGCTTGACGAAGAATTGCAGAATCTAA ATGAAACTTTGGTTTATCCGAAAATCAATAATGGTGTTTACAGATGCGGC TTTGCGAGGAGTCAAGAAGCATACGCTCAAGCAGTCACAGAGCTTTTTGA GACACTCGAAATCTTAGAAGATCGTTTAAGCAAACAACGGTATTTGGGCA GTTCGACTAAACTCACCTGGCTTGATTTGAGGCTTTTTATGACTCTAGTA CGTTTCGATCCTGTATATGTGACATACTTCAAGACCAACAAGAAACGTCT GGTTGATTATCCGAATCTTCTTGACTTTACCAGAGATGTCTACTCCAATG AGAACATCAAACGGGTGATCAATTTCAAACATATTAAAACTCATTATTTT ACTTCTCACCCTGTTTTCAACACATATGGTATTATACCAATTTACGACGG CCCGGATTTGGAATTGCAAAGTGGCCGTGAACAAATAGGACATTGAATGT CTGCGCTAACCAACACATCGGTAGATCCTAAAGGAgcatttcaaagaaac aaaGCTAAACATGGAAATCTCATCGCTAAAGGTGGACAATATCCACCGGA GGCGGGCCGTTATCATTTGCACATCGCATTGGCGTGCCCATGGGCGGATG GCGTTTTAGCCATGTTGTTTTTGAAAGGCTTAGATCACTTGATCTCGCAC TCTATTGTTCATCCCACGTGGGGTAAAACGAAGCCGGATGATGACGAAGA TACTCATTATGGATGGATGTATAAAAAACcagGTGACGATCCATTGCCCA ATCCACTTGGTCATGGTTCAAATGAATGTGACGATGCTTTGATCCCTGAT ACATTTACAAACGCCAAATCTGTCCGTGAAGTTTACAATCAATGTGGTGA CCATTCAGGCCCCTTCTCCACACCCCTTCTGTATGATAAGGAAACCAAAT CGATTGTTTGCAATGAAAGTATGCTTATCTTAAGAATGCTAAATGACGAA TTCAATGAGTATGCAAAACACCCTGAGATTGATTTATATCCAAAAGAGCT TGACGAAGAATTGCAGAATCTAAATGAAACTTTGGTTTATCCGAAAATCA ATAATGGTGTTTACAGATGCGGCTTTGCGAGGAGTCAAGAAGCATACGCT CAAGCAGTCACAGAGCTTTTTGAGACACTCGAAATCTTAGAAGATCGTTT AAGCAAACAACGGTATTTGGGCAGTTCGACTAAACTCACCTGGCTTGATT TGAGGCTTTTTATGACTCTAGTACGTTTCGATCCTGTATATGTGACATAC TTCAAGACCAACAAGAAACGTCTGGTTGATTATCCGAATCTTCTTGACTT TACCAGAGATGTCTACTCCAATGAGAACATCAAACGGGTGATCAATTTCA AACATATTAAAACTCATTATTTTACTTCTCACCCTGTTTTCAACACATAT GGTATTATACCAATTTACGACGGCCCGGATTTGGAATTGCAAAGTGGCCG TGAACAAATAGGACATTGAATGTCTGCGCTAACCAACACATCGGTAGATC CTAAAGGAgcatttcaaagaaacaaaGCTAAACATGGAAATCTCATCGCT AAAGGTGGACAATATCCACCGGAGGCGGGCCGTTATCATTTGCACATCGC ATTGGCGTGCCCATGGGCGGATGGCGTTTTAGCCATGTTGTTTTTGAAAG GCTTAGATCACTTGATCTCGCACTCTATTGTTCATCCCACGTGGGGTAAA ACGAAGCCGGATGATGACGAAGATACTCATTATGGATGGATGTATAAAAA ACcagGTGACGATCCATTGCCCAATCCACTTGGTCATGGTTCAAATGAAT GTGACGATGCTTTGATCCCTGATACATTTACAAACGCCAAATCTGTCCGT GAAGTTTACAATCAATGTGGTGACCATTCAGGCCCCTTCTCCACACCCCT TCTGTATGATAAGGAAACCAAATCGATTGTTTGCAATGAAAGTATGCTTA TCTTAAGAATGCTAAATGACGAATTCAATGAGTATGCAAAACACCCTGAG ATTGATTTATATCCAAAAGAGCTTGACGAAGAATTGCAGAATCTAAATGA AACTTTGGTTTATCCGAAAATCAATAATGGTGTTTACAGATGCGGCTTTG CGAGGAGTCAAGAAGCATACGCTCAAGCAGTCACAGAGCTTTTTGAGACA CTCGAAATCTTAGAAGATCGTTTAAGCAAACAACGGTATTTGGGCAGTTC GACTAAACTCACCTGGCTTGATTTGAGGCTTTTTATGACTCTAGTACGTT TCGATCCTGTATATGTGACATACTTCAAGACCAACAAGAAACGTCTGGTT GATTATCCGAATCTTCTTGACTTTACCAGAGATGTCTACTCCAATGAGAA CATCAAACGGGTGATCAATTTCAAACATATTAAAACTCATTATTTTACTT CTCACCCTGTTTTCAACACATATGGTATTATACCAATTTACGACGGCCCG GATTTGGAATTGCAAAGTGGCCGTGAACAAATAGGACATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00006133-exon-sc0000063-1491911889:373958..374421 | TCONS_00006133-exon-sc0000063-1491911889:373958..374421 | Clytia hemisphaerica | exon |
TCONS_00006133-exon-sc0000063-1510915933:373958..374421 | TCONS_00006133-exon-sc0000063-1510915933:373958..374421 | Clytia hemisphaerica | exon |
TCONS_00006133-exon-sc0000063-1575043694:373958..374421 | TCONS_00006133-exon-sc0000063-1575043694:373958..374421 | Clytia hemisphaerica | exon |
TCONS_00006133-exon-sc0000063-1491911889:374806..374902 | TCONS_00006133-exon-sc0000063-1491911889:374806..374902 | Clytia hemisphaerica | exon |
TCONS_00006133-exon-sc0000063-1510915933:374806..374902 | TCONS_00006133-exon-sc0000063-1510915933:374806..374902 | Clytia hemisphaerica | exon |
TCONS_00006133-exon-sc0000063-1575043694:374806..374902 | TCONS_00006133-exon-sc0000063-1575043694:374806..374902 | Clytia hemisphaerica | exon |
TCONS_00006133-exon-sc0000063-1491911889:375136..375239 | TCONS_00006133-exon-sc0000063-1491911889:375136..375239 | Clytia hemisphaerica | exon |
TCONS_00006133-exon-sc0000063-1510915933:375136..375239 | TCONS_00006133-exon-sc0000063-1510915933:375136..375239 | Clytia hemisphaerica | exon |
TCONS_00006133-exon-sc0000063-1575043694:375136..375239 | TCONS_00006133-exon-sc0000063-1575043694:375136..375239 | Clytia hemisphaerica | exon |
TCONS_00006133-exon-sc0000063-1491911889:376361..377374 | TCONS_00006133-exon-sc0000063-1491911889:376361..377374 | Clytia hemisphaerica | exon |
TCONS_00006133-exon-sc0000063-1510915933:376361..377374 | TCONS_00006133-exon-sc0000063-1510915933:376361..377374 | Clytia hemisphaerica | exon |
TCONS_00006133-exon-sc0000063-1575043694:376361..377374 | TCONS_00006133-exon-sc0000063-1575043694:376361..377374 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000063 | supercontig | sc0000063:373958..377374 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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