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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006121 ID=TCONS_00006121|Name=TCONS_00006121|organism=Clytia hemisphaerica|type=transcript|length=1679bp
CAaagaatttaagaacaatgccgCGTTCTTTTTTGATTAAGCGAATCGAG
GAGAAAATGGTTACTGGGTATTTCCCTTGGCAGGATGAGACGCTGATGGA
GGGATGCTGTTTGAAGTATGAAATGGAAGATGAAAGTGACCGCGCGACAT
TTAATGGAAAAGGAGGTTCACATACAGGNGTATGAAATGGAAGATGAGAG
TGACCGCGCGACGTTTGATAGAAAAGGAGATTCACATACAGGATCAGACA
GCGGTAAAACCTCAACATCGTCACCTTCTGAGATtcaaattctgacaccc
ttccaTTCAGGAATGTCCCCTCCAACAATGTTAGTATCGTCATGCTGCGA
TAAAGACCATGGGGACAGTGGTTCCCTCTCACCTGCATCTAGCTGCCATC
ACGAGGGATCAAGCCCGTTCTTCTCTCGGTCTAGCTCCAGCCAGGATGGA
TTAGGCCCAATGTCACCTGAATCTAACTATCAGAGAAATTTACTAAGATC
CACCCTATCCGCACATAACTACAACCATATGGTAGCAGGCTCCCTCTCGC
CTGCTTCGAGCTACAACCAGGAGGAAGACATGATACCATCCCCCTCCGGG
CAACACCAACAAAAAAGCAGTGACCATCATGTGAAAGCATTATCCTCGAC
CAAAAGATACGGAGGTATCCTACCCCGTTCAGGATTGAGCTATCTACCAC
CTTGGTACGTAACCTCCTCAGACGAGATCAAAAAGCACCAATGTGAATAT
TGTCTTAAATGGTTCCAAAGATCAAGTAGTTTATCAAATCACCGATTAAT
CCATAAGAACTCCAAATCATACAAGTGCAACCAATGTAATATGAGCTTTC
TTCGTAAGTCTGACCTCGGTAAACACATGGTCACACATTCTGGATCAAAA
CCATACCAGTGTAACGTTTGTGGTAAACGCTTTTCACAATCTTCGAATAT
GCTAACTCATCAAAGACGCCATACCGGGATCCGTCCGTATTCTTGTGGTG
TATGCGGGAAGGCTTTTTACCGGAAAGTTGACGTTAGGAGACATGATTTA
GTTCATAGGAGTTATTGAAGACAGCCATTAATAAGAGATATTATCCACGA
TAATCCACGGACCTTTTTCCATCATGTTTATAAATGTTTAGTTGAATTTT
AGAGGGTGTgcacatttttgtcaaaaaagattaaatatgacttcgatggc
taaaatattatgaattgagaacattttaaggctttgtggcctctaaaaca
caaaaaaatgggATATTTTTAGATTAATTTTTAAATCGGAATATTCAACA
GAGCACCAACAAAATGGTCGAAATAAGAACcgagttaagaacatcttcag
gtttAAGACTCTGAATGCTATGAAAATTTAgaggcttcaaatattttgga
tgtcaGAAATGGATTACACATTACACTAGGTTATTATATTATTACATGGT
TAACTTTGACACAGGATCatactttattttgaagatattATATTATGGAA
TCGATATTCGATTTTAATCGCTTCGTTATAGAAGCTTTATTATTTCTGAA
CATAACTTTTGTATTGTTGATACATTCAAAGACACTAtatattcattttt
tataagaaatttttaaccctttataaatttttaaccaaagttttgttata
taaatttgtgatttttttatgaatcaGAG Run BLAST on NCBI protein sequence of TCONS_00006121-protein >TCONS_00006121-protein ID=TCONS_00006121-protein|Name=TCONS_00006121-protein|organism=Clytia hemisphaerica|type=polypeptide|length=316bp
MKWKMKVTARHLMEKEVHIQXYEMEDESDRATFDRKGDSHTGSDSGKTST
SSPSEIQILTPFHSGMSPPTMLVSSCCDKDHGDSGSLSPASSCHHEGSSP
FFSRSSSSQDGLGPMSPESNYQRNLLRSTLSAHNYNHMVAGSLSPASSYN
QEEDMIPSPSGQHQQKSSDHHVKALSSTKRYGGILPRSGLSYLPPWYVTS
SDEIKKHQCEYCLKWFQRSSSLSNHRLIHKNSKSYKCNQCNMSFLRKSDL
GKHMVTHSGSKPYQCNVCGKRFSQSSNMLTHQRRHTGIRPYSCGVCGKAF
YRKVDVRRHDLVHRSY Run BLAST on NCBI transcript from alignment at sc0000063:176022..181355+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006121 ID=TCONS_00006121|Name=TCONS_00006121|organism=Clytia hemisphaerica|type=transcript|length=5334bp|location=Sequence derived from alignment at sc0000063:176022..181355+ (Clytia hemisphaerica)
CAaagaatttaagaacaatgccgCGTTCTTTTTTGATTAAGCGAATCGAG
GAGAAAATGGTTACTGGGTATTTCCCTTGGCAGGATGAGACGCTGATGGA
GGGATGCTGTTTGAAGTATGAAATGGAAGATGAAAGTGACCGCGCGACAT
TTAATGGAAAAGGAGGTTCACATACAGGNGTATGAAATGGAAGATGAGAG
TGACCGCGCGACGTTTGATAGAAAAGGAGATTCACATACAGGTAacttaa
aacattttctctttGCTCGAGTGTGTCTTGAGTTTAccattagcctattt
catacaGGTAATCTGAAACATTGTTTTTTTGGTATGGGTGTGCATCGAGG
TATGCTGCAGGCctccctctgatatgttttgatgtagAGGATGATAGTCC
CCAAAGTCGTGTTAGAAATTCTctgtccgagagttaccccaatTTTTGGG
TAACcggttttaattttcttaagaaggtttagaaatccaatgattgtatt
aacctctagccattcaaatttttaattcagatttaatgaaataataaaga
aaacttTCTAATCAAGCAAATCCAAAAGATTTCTAAATCTTAAAAACTAA
GacgggggtaactctcggacgggaattttatacatgaTGAGAATCCCCTA
tatcacgttttttataagaacatccaaaatctttgaagccttcggtTGTT
CTTAATCATTtcaagttttaagtctaaaaatgttcttaacatgttcttat
tttcttgtttttataacATAAAATGTATAGCTTTGGCGTCAGACCTGTTT
ATGAGAAAGTAGCAGAAATCTTGGAACTTGATCAATATCATCATTACGTT
GACGCTTATGCAaccaaaaagttcatttttgatttttttcgaaaaatata
atactgaatttgaatttgcttAACTTGCtctcaacatttttttttttata
aaaatgtccaaaatcttttaagccttcggatcaTGGATGTTCTTACCCTT
TGAGTTTTAGGCCCAAACTGTTCTTGAAATAGTTTTGTGTAATAtactaa
gaaattgggtgttttagagtccttaaagacttaaaatgttcttaacttgc
tctcaACATTTTGGCtaccgaagccttatgttctcataaagtttgttctt
ataaaaaacgtactAGTGTGGATTTTTGATTCCTTCAATCGACAAACTTA
TAAACAATATAATGACAAATCAAAAATTACCAGAATTccacaaaaagaaa
ttaaaaaaaccaATGCCAACCCATTGTGAACAGttataattgtttttttg
tcaaactTGGAATAAACAACATACATTGGNCATGCCAACCCATTGAACAG
TTATAATTGTTTTATTGTCAAACTTTGAATCAACAACACGCATTGGCTTG
CTTTCAAAgacttttcattttcgtttcacTCTCTCGTTTACGTTTGAAAT
GACGTCAAAAGGCATGAAGCCAATTACGTTAAcgacttttttgtttacaa
gttTCTTCGAAATTAGCATTTAATTGTCATTGgaaatgtttttcaaatga
GAATAGAAAAAAGTCGTTAAAATGGTAATTCATGGTTAATCTTTAACGGT
AGCATACCCATTTATCCTTCgcacgttgtttcaacgttcatttaacgtta
aatggacattGTGCCAGTTGGAATGCGATACATTTACTTTCAACCAATTA
CATTTAATTTTTGGAGGGAAATTTctagattcaatctgttgtcaaaaatg
cggcgccttttttaaggcttcactttttcttgcctgagaaaggttagaga
ttgaactctagcccttcgggctttaaactcaatgggaaACACAAGCACCA
TGGTCgaactttctaaaaaatctTGTTTGCCGAAATCGCACATAGTCTTT
AATGACCTAACCCAAAGTGTACTGCTTTCAcgaagtttttttaaaagtta
AGTTGAGGTTGTGGAGTATTTTCTGCAATACGCACTGAAAATGAGTGCTT
TTTTCATAGTACAGTTTTTAATTTTCgacaaatttttagaatttaacaTT
ACTGATTATTTTTCAAGcttatttccaaaaatatataatttcctCAGAAC
TTTGCACAATTTAaaggaaaattgataattaAATCCTTGTTCAGTTCGGC
GATACATATCTTTAGGACATGTGGATTccaccccagctggcacacaacgc
tttttcgacgtttatctaacgtttacaacgttcatataacgttagatgaa
cgttgaaacaacgttgtgtgccagctgggaccaAATTGCTCACAATCGGA
AAGAAGGAAATTTTGGTGGAAATCTAAAAAGTTTAGAGCAAATAAATACg
ttaaaagttttgattttcttataaaaaacgatgaAAAGCAATTAAAACAT
TCTCTTGTGTTCCGTGCCAGACAGGAACAGGGCGGGGCGTTCGAAACCAC
GAAGACGCCACATGGNAAAAAGCAATTAAAGCATCCTCTTGTATTCCGTG
CCAGACACGACCAGGGCGGGGCGTTCGAAACCACGAAGACGCCACATGGT
CAATCAAAAAGagtaattttttattcttttatgaGAGAGATTTTATAACC
Acttttggatttcattttaaaaatgtccttaaaatgtttttatcttcggt
atttttggtgtaatttcaTGAGGAATTGCATGTCTTAGAGCTTTTGAATT
CCATAAAATCGTTGGCTTGCACTGAAGACTTATATTCTTATATGGAAAAG
AGTCAATCGTTAAACGACTTTGCTTCGACTAATGATAGCCTTTGTATGCT
CCGCCTTACCTCGTAAAGAGAGTTTCGAAGCTTAACTGGTCTCAACTTTT
TGTTTACAGACTGTTGCCACGGTGACAAACAAACTATTTCCCATGAAAAT
TCGGGGGTAGGGGTTAAACACTTAACCCTCAAATTTAGGcaatgttcaga
cgttacagtTTCGTATCGCTCCGATATGGTTTCtgttacggatcgagagt
gttcatacTGATTTCGGAACGTTTTGGAGCAAGAAAATGAGGCAGGATGA
AAATGGTGGAGTGAAGCCGTTTCGATCTTCTTTTCGACGTTTCGAATTTC
GACGTTCACACTTGATTcagaaccgtttcgtttcggaacaatacggaaca
gtaacgtctgaacatggtcttagaggTTTATAAAGTTCTCGACTCAGAGG
GGAGGGGTTAGCCCAACAGATACTAAACTAACCTTTTCTTCAATTTAACC
CTTTATTGAAAAGCATAATATTAAACATGAACAAGCAAACATCTTTCTAT
AGGAAAGGTGTCTACAGACCACAGAACTTGACAGAAGTGTCACACAGATT
gtatttccaccattatggaaacatACGTTCGAAACTGTAGAAGCGATTCC
TtataagtaaataaaaaaacgatATAAACACACAGGCAACAATATTCCAA
TGTGTAATAGATCTACAGGTCACggaaatgtaaaataactgtCTTACAAA
GAATGCATTTCTaaatatacagggtgtccctaataaaagtatcgagtttg
aacatgcgattgagtaaaaaagtttgtgtgtgttatcgctaaaatataag
aacgttctccgtcacataggctcattacaaaaggtagttacaacgtataa
attaatcgtaatgacaaagaaaaaagagggcgagcttaaaatacaatttt
gtgaatacacacttaaaactttctactcaatcgcatgttcaaactcgata
cttttattagggacaccctgtagaagcCGTAATTAATTTCTCCACATGAA
ATTACACAGAAAACCACATCTGATTGTAATATATACTGCATCTTTATAGC
ATTTACATAATCTGTTCTAAATTAACTTTCTCTTTTCCCTTCTCAGGATC
AGACAGCGGTAAAACCTCAACATCGTCACCTTCTGAGATtcaaattctga
cacccttccaTTCAGGAATGTCCCCTCCAACAATGTTAGTATCGTCATGC
TGCGATAAAGACCATGGGGACAGTGGTTCCCTCTCACCTGCATCTAGCTG
CCATCACGAGGGATCAAGCCCGTTCTTCTCTCGGTCTAGCTCCAGCCAGG
ATGGATTAGGCCCAATGTCACCTGAATCTAACTATCAGAGAAATTTACTA
AGATCCACCCTATCCGCACATAACTACAACCATATGGTAGCAGGCTCCCT
CTCGCCTGCTTCGAGCTACAACCAGGAGGAAGACATGATACCATCCCCCT
CCGGGCAACACCAACAAAAAAGCAGTGACCATCATGTGAAAGCATTATCC
TCGACCAAAAGATACGGAGGTATCCTACCCCGTTCAGGATTGAGCTATCT
ACCACCTTGGTACGTAACCTCCTCAGACGAGATCAAAAAGCACCAATGTG
AATATTGTCTTAAATGGTTCCAAAGATCAAGTAGTTTATCAAATCACCGA
TTAATCCATAAGAACTCCAAATCATACAAGTGCAACCAATGTAATATGAG
CTTTCTTCGTAAGTCTGACCTCGGTAAACACATGGTCACACATTCTGGAT
CAAAACCATACCAGTGTAACGTTTGTGGTAAACGCTTTTCACAATCTTCG
AATATGCTAACTCATCAAAGACGCCATACCGGGATCCGTCCGTATTCTTG
TGGTGTATGCGGGAAGGCTTTTTACCGGAAAGTTGACGTTAGGAGACATG
ATTTAGTTCATAGGAGTTATTGAAGACAGCCATTAATAAGAGATATTATC
CACGATAATCCACGGACCTTTTTCCATCATGTTTATAAATGTTTAGTTGA
ATTTTAGAGGGTGTgcacatttttgtcaaaaaagattaaatatgacttcg
atggctaaaatattatgaattgagaacattttaaggctttgtggcctcta
aaacacaaaaaaatgggATATTTTTAGATTAATTTTTAAATCGGAATATT
CAACAGAGCACCAACAAAATGGTCGAAATAAGAACcgagttaagaacatc
ttcaggtttAAGACTCTGAATGCTATGAAAATTTAgaggcttcaaatatt
ttggatgtcaGAAATGGATTACACATTACACTAGGTTATTATATTATTAC
ATGGTTAACTTTGACACAGGATCatactttattttgaagatattATATTA
TGGAATCGATATTCGATTTTAATCGCTTCGTTATAGAAGCTTTATTATTT
CTGAACATAACTTTTGTATTGTTGATACATTCAAAGACACTAtatattca
ttttttataagaaatttttaaccctttataaatttttaaccaaagttttg
ttatataaatttgtgatttttttatgaatcaGAG Coding sequence (CDS) from alignment at sc0000063:176022..181355+ >TCONS_00006121 ID=TCONS_00006121|Name=TCONS_00006121|organism=Clytia hemisphaerica|type=CDS|length=1902bp|location=Sequence derived from alignment at sc0000063:176022..181355+ (Clytia hemisphaerica)
ATGAAATGGAAGATGAAAGTGACCGCGCGACATTTAATGGAAAAGGAGGT
TCACATACAGGNGTATGAAATGGAAGATGAGAGTGACCGCGCGACGTTTG
ATAGAAAAGGAGATTCACATACAGGATCAGACAGCGGTAAAACCTCAACA
TCGTCACCTTCTGAGATtcaaattctgacacccttccaTTCAGGAATGTC
CCCTCCAACAATGTTAGTATCGTCATGCTGCGATAAAGACCATGGGGACA
GTGGTTCCCTCTCACCTGCATCTAGCTGCCATCACGAGGGATCAAGCCCG
TTCTTCTCTCGGTCTAGCTCCAGCCAGGATGGATTAGGCCCAATGTCACC
TGAATCTAACTATCAGAGAAATTTACTAAGATCCACCCTATCCGCACATA
ACTACAACCATATGGTAGCAGGCTCCCTCTCGCCTGCTTCGAGCTACAAC
CAGGAGGAAGACATGATACCATCCCCCTCCGGGCAACACCAACAAAAAAG
CAGTGACCATCATGTGAAAGCATTATCCTCGACCAAAAGATACGGAGGTA
TCCTACCCCGTTCAGGATTGAGCTATCTACCACCTTGGTACGTAACCTCC
TCAGACGAGATCAAAAAGCACCAATGTGAATATTGTCTTAAATGGTTCCA
AAGATCAAGTAGTTTATCAAATCACCGATTAATCCATAAGAACTCCAAAT
CATACAAGTGCAACCAATGTAATATGAGCTTTCTTCGTAAGTCTGACCTC
GGTAAACACATGGTCACACATTCTGGATCAAAACCATACCAGTGTAACGT
TTGTGGTAAACGCTTTTCACAATCTTCGAATATGCTAACTCATCAAAGAC
GCCATACCGGGATCCGTCCGTATTCTTGTGGTGTATGCGGGAAGGCTTTT
TACCGGAAAGTTGACGTTAGGAGACATGATTTAGTTCATAGGAGTTATTG
AATGAAATGGAAGATGAAAGTGACCGCGCGACATTTAATGGAAAAGGAGG
TTCACATACAGGNGTATGAAATGGAAGATGAGAGTGACCGCGCGACGTTT
GATAGAAAAGGAGATTCACATACAGGATCAGACAGCGGTAAAACCTCAAC
ATCGTCACCTTCTGAGATtcaaattctgacacccttccaTTCAGGAATGT
CCCCTCCAACAATGTTAGTATCGTCATGCTGCGATAAAGACCATGGGGAC
AGTGGTTCCCTCTCACCTGCATCTAGCTGCCATCACGAGGGATCAAGCCC
GTTCTTCTCTCGGTCTAGCTCCAGCCAGGATGGATTAGGCCCAATGTCAC
CTGAATCTAACTATCAGAGAAATTTACTAAGATCCACCCTATCCGCACAT
AACTACAACCATATGGTAGCAGGCTCCCTCTCGCCTGCTTCGAGCTACAA
CCAGGAGGAAGACATGATACCATCCCCCTCCGGGCAACACCAACAAAAAA
GCAGTGACCATCATGTGAAAGCATTATCCTCGACCAAAAGATACGGAGGT
ATCCTACCCCGTTCAGGATTGAGCTATCTACCACCTTGGTACGTAACCTC
CTCAGACGAGATCAAAAAGCACCAATGTGAATATTGTCTTAAATGGTTCC
AAAGATCAAGTAGTTTATCAAATCACCGATTAATCCATAAGAACTCCAAA
TCATACAAGTGCAACCAATGTAATATGAGCTTTCTTCGTAAGTCTGACCT
CGGTAAACACATGGTCACACATTCTGGATCAAAACCATACCAGTGTAACG
TTTGTGGTAAACGCTTTTCACAATCTTCGAATATGCTAACTCATCAAAGA
CGCCATACCGGGATCCGTCCGTATTCTTGTGGTGTATGCGGGAAGGCTTT
TTACCGGAAAGTTGACGTTAGGAGACATGATTTAGTTCATAGGAGTTATT
GA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006121-exon-sc0000063-1491911889:176022..176262 | TCONS_00006121-exon-sc0000063-1491911889:176022..176262 | Clytia hemisphaerica | exon |
| TCONS_00006121-exon-sc0000063-1510915933:176022..176262 | TCONS_00006121-exon-sc0000063-1510915933:176022..176262 | Clytia hemisphaerica | exon |
| TCONS_00006121-exon-sc0000063-1575043694:176022..176262 | TCONS_00006121-exon-sc0000063-1575043694:176022..176262 | Clytia hemisphaerica | exon |
| TCONS_00006121-exon-sc0000063-1491911889:179918..181355 | TCONS_00006121-exon-sc0000063-1491911889:179918..181355 | Clytia hemisphaerica | exon |
| TCONS_00006121-exon-sc0000063-1510915933:179918..181355 | TCONS_00006121-exon-sc0000063-1510915933:179918..181355 | Clytia hemisphaerica | exon |
| TCONS_00006121-exon-sc0000063-1575043694:179918..181355 | TCONS_00006121-exon-sc0000063-1575043694:179918..181355 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000063 | supercontig | sc0000063:176022..181355 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
BLAST of TCONS_00006121 vs. Swiss-Prot (Human)
Match: GFI1 (Zinc finger protein Gfi-1 OS=Homo sapiens GN=GFI1 PE=1 SV=2) HSP 1 Score: 130.568 bits (327), Expect = 6.968e-33 Identity = 56/101 (55.45%), Postives = 74/101 (73.27%), Query Frame = 1
Query: 742 CEYCLKWFQRSSSLSNHRLIHKNSKSYKCNQCNMSFLRKSDLGKHMVTHSGSKPYQCNVCGKRFSQSSNMLTHQRRHTGIRPYSCGVCGKAFYRKVDVRRH 1044
C+ C K F+RSS+LS H LIH +++ Y C C F +KSD+ KH H+G KP++C VCGK FSQSSN++TH R+HTG +P+ C +CGK F RKVD+RRH
Sbjct: 314 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFGCDLCGKGFQRKVDLRRH 414
The following BLAST results are available for this feature:
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