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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006120 ID=TCONS_00006120|Name=TCONS_00006120|organism=Clytia hemisphaerica|type=transcript|length=964bp
TCAAGATATCTATCTCTTTGGTCCAGTTCATCAAGGTCAAAAAAGACAAA
GCACGGCGGAAAGGTGGAAATTGAAGACCCACGATTCAGTTTTTATGGGT
TTAACCAAAACTACTCTTTTATTAACATGATCGTTAACAGCAATCATTTT
GATGGATTCCTGCCAAGATTTTTGGTCGCTACTTCTGAAGAGGAGTATGT
TCCAATAACGGAAAAAATTGCAGCttcgaaaacaaaagtttcaCTCTGTA
TCCAGAATTTgtttgacaaaattttcaaacactttTACTAAATAGGTCAT
GTTTTTGAGCTAGACACTGAAGCATTTACTTTGTTTACATCatatgatca
aaaagttttggaCTTCAGAAAGGCAGATGTGTTCGAAGACATGAAATCAA
TGATTATGTCCAAAAGTATCGGTAATGTGCCGAGAGTAGCTGCTCTCCAA
TGCGCACTACGCGTTGTTACCTCAAACCTCAATGCCGATGACTTATCAAA
TCTGGATTTCACAATTGGGATGGTCGACATGGAACGAGCCATCACGTTGG
CAACGTATTCGGTTAACTGTTTAATTGCATTGATAGACAGCATGAAAAAT
ACTTCACGAAATGATAGGAAACGACATAGCGAAATGCCTTTACCTGAAGT
AATGGATGAGGAGTTTCTATTGGTCCACAAGGCGAAAATCAAAAAGATCT
TCACGCAAAATTCAAAGATCGTACCGGTTTCATCCATCACAAGAAATCAC
ATGTGTCCTCAAATAGGTGGGAAAAATGGTTCAGAAGAAGCTAAACGTTT
TCTAAAGGGGTTAGAGTTGAATGGTCTTGGTAAGCTGTCAGTGGAGAATG
ATAAATCAGTATTTATTGTAAccgataaagaaaacattgaaaatcaGATA
GTCTCAGATTTGATGACTAAACTCGATCTTTGAGTCTTATACATTATCAC
AATTAATATTTATG Run BLAST on NCBI protein sequence of TCONS_00006120-protein >TCONS_00006120-protein ID=TCONS_00006120-protein|Name=TCONS_00006120-protein|organism=Clytia hemisphaerica|type=polypeptide|length=180bp
MKSMIMSKSIGNVPRVAALQCALRVVTSNLNADDLSNLDFTIGMVDMERA
ITLATYSVNCLIALIDSMKNTSRNDRKRHSEMPLPEVMDEEFLLVHKAKI
KKIFTQNSKIVPVSSITRNHMCPQIGGKNGSEEAKRFLKGLELNGLGKLS
VENDKSVFIVTDKENIENQIVSDLMTKLDL Run BLAST on NCBI transcript from alignment at sc0000063:102030..103222+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006120 ID=TCONS_00006120|Name=TCONS_00006120|organism=Clytia hemisphaerica|type=transcript|length=1193bp|location=Sequence derived from alignment at sc0000063:102030..103222+ (Clytia hemisphaerica)
TCAAGGTAACTTTTTACTTAGTTTTGTAATTTTAAGATCCCATATACCTC
ACCGTCGTCAAATATAGGTAATACGCACTCCAATGGAGAACCTAAAATCT
TAATTGTGACACGGGTTTTCGCATAATCTCAGTTAGTATTAGACCTGACA
TCCATATGTTCAATTTTAAcgtttatcttttgaaaatagctCTTCATGTA
ATGGTATATGAACATAAGATACTTTTATCTTTAGATATCTATCTCTTTGG
TCCAGTTCATCAAGGTCAAAAAAGACAAAGCACGGCGGAAAGGTGGAAAT
TGAAGACCCACGATTCAGTTTTTATGGGTTTAACCAAAACTACTCTTTTA
TTAACATGATCGTTAACAGCAATCATTTTGATGGATTCCTGCCAAGATTT
TTGGTCGCTACTTCTGAAGAGGAGTATGTTCCAATAACGGAAAAAATTGC
AGCttcgaaaacaaaagtttcaCTCTGTATCCAGAATTTgtttgacaaaa
ttttcaaacactttTACTAAATAGGTCATGTTTTTGAGCTAGACACTGAA
GCATTTACTTTGTTTACATCatatgatcaaaaagttttggaCTTCAGAAA
GGCAGATGTGTTCGAAGACATGAAATCAATGATTATGTCCAAAAGTATCG
GTAATGTGCCGAGAGTAGCTGCTCTCCAATGCGCACTACGCGTTGTTACC
TCAAACCTCAATGCCGATGACTTATCAAATCTGGATTTCACAATTGGGAT
GGTCGACATGGAACGAGCCATCACGTTGGCAACGTATTCGGTTAACTGTT
TAATTGCATTGATAGACAGCATGAAAAATACTTCACGAAATGATAGGAAA
CGACATAGCGAAATGCCTTTACCTGAAGTAATGGATGAGGAGTTTCTATT
GGTCCACAAGGCGAAAATCAAAAAGATCTTCACGCAAAATTCAAAGATCG
TACCGGTTTCATCCATCACAAGAAATCACATGTGTCCTCAAATAGGTGGG
AAAAATGGTTCAGAAGAAGCTAAACGTTTTCTAAAGGGGTTAGAGTTGAA
TGGTCTTGGTAAGCTGTCAGTGGAGAATGATAAATCAGTATTTATTGTAA
ccgataaagaaaacattgaaaatcaGATAGTCTCAGATTTGATGACTAAA
CTCGATCTTTGAGTCTTATACATTATCACAATTAATATTTATG Coding sequence (CDS) from alignment at sc0000063:102030..103222+ >TCONS_00006120 ID=TCONS_00006120|Name=TCONS_00006120|organism=Clytia hemisphaerica|type=CDS|length=543bp|location=Sequence derived from alignment at sc0000063:102030..103222+ (Clytia hemisphaerica)
ATGAAATCAATGATTATGTCCAAAAGTATCGGTAATGTGCCGAGAGTAGC
TGCTCTCCAATGCGCACTACGCGTTGTTACCTCAAACCTCAATGCCGATG
ACTTATCAAATCTGGATTTCACAATTGGGATGGTCGACATGGAACGAGCC
ATCACGTTGGCAACGTATTCGGTTAACTGTTTAATTGCATTGATAGACAG
CATGAAAAATACTTCACGAAATGATAGGAAACGACATAGCGAAATGCCTT
TACCTGAAGTAATGGATGAGGAGTTTCTATTGGTCCACAAGGCGAAAATC
AAAAAGATCTTCACGCAAAATTCAAAGATCGTACCGGTTTCATCCATCAC
AAGAAATCACATGTGTCCTCAAATAGGTGGGAAAAATGGTTCAGAAGAAG
CTAAACGTTTTCTAAAGGGGTTAGAGTTGAATGGTCTTGGTAAGCTGTCA
GTGGAGAATGATAAATCAGTATTTATTGTAAccgataaagaaaacattga
aaatcaGATAGTCTCAGATTTGATGACTAAACTCGATCTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006120-exon-sc0000063-1491911889:102030..102034 | TCONS_00006120-exon-sc0000063-1491911889:102030..102034 | Clytia hemisphaerica | exon |
| TCONS_00006120-exon-sc0000063-1510915933:102030..102034 | TCONS_00006120-exon-sc0000063-1510915933:102030..102034 | Clytia hemisphaerica | exon |
| TCONS_00006120-exon-sc0000063-1575043694:102030..102034 | TCONS_00006120-exon-sc0000063-1575043694:102030..102034 | Clytia hemisphaerica | exon |
| TCONS_00006120-exon-sc0000063-1491911889:102264..103222 | TCONS_00006120-exon-sc0000063-1491911889:102264..103222 | Clytia hemisphaerica | exon |
| TCONS_00006120-exon-sc0000063-1510915933:102264..103222 | TCONS_00006120-exon-sc0000063-1510915933:102264..103222 | Clytia hemisphaerica | exon |
| TCONS_00006120-exon-sc0000063-1575043694:102264..103222 | TCONS_00006120-exon-sc0000063-1575043694:102264..103222 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000063 | supercontig | sc0000063:102030..103222 + |
Blast
The following BLAST results are available for this feature:
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