TCONS_00006118 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006118
Unique NameTCONS_00006118
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length647

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006118 ID=TCONS_00006118|Name=TCONS_00006118|organism=Clytia hemisphaerica|type=transcript|length=647bp
CTttacgaaaaccaaattgtcTAGAGTATATTTGATTGAATTGGTTTAAA
AATTCCACGACCCGCGAATACATAATTTTTTCATAGATCTTTTCTATGTT
AGATAAGAGAGAAATTGGGCGATAGTTTGATACATCGAGCGGGgagcctt
tgtttttgaagactgGAATAACCTTCGAGATTTTTAGTACTTCAGGAAAT
ACCCCTGTATGATAGGATCGATTGATTAGAGTCGAAAGGGGATTTGAGAT
CTTATCTTGAaggattttgagaatttttattGGGATACTGTTTGGTCCAG
ATGACTTAGAAGAGGAGAAGGATCCAATAATTTTTGCGACTTAATCAGGT
GATGTAGGTCTGAGGAAAAtggagttttgatttttgtgtttGAGGAAAGA
GGAGAAGTGTTGATAAGAGGGGGGAATCTTGTCCCTGATGTCATCAGCAA
TGGAAgtgaaaaagttgttaaaatggTTAGCAACTTTGTCAGGCTTCGAT
TGAATCTGACCATCAATTGTTACGGAGATATTGGAATTAGTTTGAGTTTT
AGATGAAATAATGTCACGGATCCCGGACCAgacttttttcatattattgg
aatatctttgaaaaaagcttgtgtagtaattttttttacttaattTG
Run BLAST on NCBI

protein sequence of TCONS_00006118-protein

>TCONS_00006118-protein ID=TCONS_00006118-protein|Name=TCONS_00006118-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
KLSKKNYYTSFFQRYSNNMKKVWSGIRDIISSKTQTNSNISVTIDGQIQS
KPDKVANHFNNFFTSIADDIRDKIPPSYQHFSSFLKHKNQNSIFLRPTSP
D
Run BLAST on NCBI

transcript from alignment at sc0000062:746867..747513

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006118 ID=TCONS_00006118|Name=TCONS_00006118|organism=Clytia hemisphaerica|type=transcript|length=647bp|location=Sequence derived from alignment at sc0000062:746867..747513 (Clytia hemisphaerica)
CAaattaagtaaaaaaaattactacacaagcttttttcaaagatattcca
ataatatgaaaaaagtcTGGTCCGGGATCCGTGACATTATTTCATCTAAA
ACTCAAACTAATTCCAATATCTCCGTAACAATTGATGGTCAGATTCAATC
GAAGCCTGACAAAGTTGCTAAccattttaacaactttttcacTTCCATTG
CTGATGACATCAGGGACAAGATTCCCCCCTCTTATCAACACTTCTCCTCT
TTCCTCaaacacaaaaatcaaaactccaTTTTCCTCAGACCTACATCACC
TGATTAAGTCGCAAAAATTATTGGATCCTTCTCCTCTTCTAAGTCATCTG
GACCAAACAGTATCCCaataaaaattctcaaaatcctTCAAGATAAGATC
TCAAATCCCCTTTCGACTCTAATCAATCGATCCTATCATACAGGGGTATT
TCCTGAAGTACTAAAAATCTCGAAGGTTATTCcagtcttcaaaaacaaag
gctcCCCGCTCGATGTATCAAACTATCGCCCAATTTCTCTCTTATCTAAC
ATAGAAAAGATCTATGAAAAAATTATGTATTCGCGGGTCGTGGAATTTTT
AAACCAATTCAATCAAATATACTCTAgacaatttggttttcgtaaAG

Coding sequence (CDS) from alignment at sc0000062:746867..747513

>TCONS_00006118 ID=TCONS_00006118|Name=TCONS_00006118|organism=Clytia hemisphaerica|type=CDS|length=306bp|location=Sequence derived from alignment at sc0000062:746867..747513 (Clytia hemisphaerica)
Aaattaagtaaaaaaaattactacacaagcttttttcaaagatattccaa
taatatgaaaaaagtcTGGTCCGGGATCCGTGACATTATTTCATCTAAAA
CTCAAACTAATTCCAATATCTCCGTAACAATTGATGGTCAGATTCAATCG
AAGCCTGACAAAGTTGCTAAccattttaacaactttttcacTTCCATTGC
TGATGACATCAGGGACAAGATTCCCCCCTCTTATCAACACTTCTCCTCTT
TCCTCaaacacaaaaatcaaaactccaTTTTCCTCAGACCTACATCACCT
GATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003493XLOC_003493Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006118-proteinTCONS_00006118-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006118-exon-sc0000062-1491911889:746867..747513TCONS_00006118-exon-sc0000062-1491911889:746867..747513Clytia hemisphaericaexon
TCONS_00006118-exon-sc0000062-1510915933:746867..747513TCONS_00006118-exon-sc0000062-1510915933:746867..747513Clytia hemisphaericaexon
TCONS_00006118-exon-sc0000062-1575043694:746867..747513TCONS_00006118-exon-sc0000062-1575043694:746867..747513Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000062supercontigsc0000062:746867..747513 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.39261	0.218771	0.445143	0.660306	3.68856	2.2888	1.9697	1.22073	0.365663	0.943924	0.825983	0.77499	0.655156	0.181932	0.419134	0.154195	0.265636	0.124648	0.732868	0.294672	0.783719	0.352956	0.112528	0.253303	0.260896	0.232844	0.299988	0	0.289194	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006118 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top